Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AC040926.1-201ENST00000530195 238 ntBASIC0.34□□□□□ -2.36
RFX3P48380 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.34□□□□□ -2.36
RFX3P48380 AC022140.2-201ENST00000623500 188 ntBASIC0.34□□□□□ -2.36
RFX3P48380 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.34□□□□□ -2.36
RFX3P48380 Y_RNA.136-201ENST00000363444 102 ntBASIC0.33□□□□□ -2.36
RFX3P48380 RNU6-1048P-201ENST00000364054 107 ntBASIC0.33□□□□□ -2.36
RFX3P48380 Y_RNA.263-201ENST00000364659 114 ntBASIC0.33□□□□□ -2.36
RFX3P48380 Y_RNA.547-201ENST00000384654 119 ntBASIC0.33□□□□□ -2.36
RFX3P48380 MIR520F-201ENST00000384824 87 ntBASIC0.33□□□□□ -2.36
RFX3P48380 SNORA26.5-201ENST00000391215 123 ntBASIC0.33□□□□□ -2.36
RFX3P48380 RNA5SP496-201ENST00000391240 109 ntBASIC0.33□□□□□ -2.36
RFX3P48380 MIR1302-11-201ENST00000408051 138 ntBASIC0.33□□□□□ -2.36
RFX3P48380 MIR1302-9-201ENST00000408365 138 ntBASIC0.33□□□□□ -2.36
RFX3P48380 MIR1302-10-201ENST00000408734 138 ntBASIC0.33□□□□□ -2.36
RFX3P48380 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC0.33□□□□□ -2.36
RFX3P48380 RNU6-191P-201ENST00000516295 94 ntBASIC0.33□□□□□ -2.36
RFX3P48380 MIR1302-2-201ENST00000607096 138 ntBASIC0.33□□□□□ -2.36
RFX3P48380 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.33□□□□□ -2.36
RFX3P48380 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.32□□□□□ -2.36
RFX3P48380 SNORD115-34-201ENST00000362441 82 ntBASIC0.32□□□□□ -2.36
RFX3P48380 SNORD115-12-201ENST00000362583 82 ntBASIC0.32□□□□□ -2.36
RFX3P48380 SNORD115-29-201ENST00000362834 82 ntBASIC0.32□□□□□ -2.36
RFX3P48380 SNORD115-9-201ENST00000362912 82 ntBASIC0.32□□□□□ -2.36
RFX3P48380 SNORD115-21-201ENST00000362963 81 ntBASIC0.32□□□□□ -2.36
RFX3P48380 SNORD115-14-201ENST00000363090 81 ntBASIC0.32□□□□□ -2.36
RFX3P48380 SNORD115-13-201ENST00000363358 82 ntBASIC0.32□□□□□ -2.36
RFX3P48380 SNORD115-41-201ENST00000363608 82 ntBASIC0.32□□□□□ -2.36
RFX3P48380 SNORD115-11-201ENST00000363616 82 ntBASIC0.32□□□□□ -2.36
RFX3P48380 RNU6-1205P-201ENST00000363625 106 ntBASIC0.32□□□□□ -2.36
RFX3P48380 SNORD115-5-201ENST00000363633 82 ntBASIC0.32□□□□□ -2.36
RFX3P48380 SNORD115-39-201ENST00000363694 82 ntBASIC0.32□□□□□ -2.36
RFX3P48380 SNORD115-4-201ENST00000363810 82 ntBASIC0.32□□□□□ -2.36
RFX3P48380 SNORD115-16-201ENST00000363887 82 ntBASIC0.32□□□□□ -2.36
RFX3P48380 SNORD115-6-201ENST00000363942 82 ntBASIC0.32□□□□□ -2.36
RFX3P48380 SNORD115-42-201ENST00000364273 82 ntBASIC0.32□□□□□ -2.36
RFX3P48380 SNORD115-15-201ENST00000364809 81 ntBASIC0.32□□□□□ -2.36
RFX3P48380 SNORD115-1-201ENST00000364961 82 ntBASIC0.32□□□□□ -2.36
RFX3P48380 SNORD115-26-201ENST00000365067 82 ntBASIC0.32□□□□□ -2.36
RFX3P48380 SNORD115-10-201ENST00000365073 81 ntBASIC0.32□□□□□ -2.36
RFX3P48380 RNU6-1138P-201ENST00000365359 106 ntBASIC0.32□□□□□ -2.36
RFX3P48380 SNORD115-43-201ENST00000365503 82 ntBASIC0.32□□□□□ -2.36
RFX3P48380 SNORA63.7-201ENST00000365579 123 ntBASIC0.32□□□□□ -2.36
RFX3P48380 SNORD115-36-201ENST00000365629 82 ntBASIC0.32□□□□□ -2.36
RFX3P48380 RNU6-1009P-201ENST00000390996 107 ntBASIC0.32□□□□□ -2.36
RFX3P48380 MIR548O-201ENST00000408583 114 ntBASIC0.32□□□□□ -2.36
RFX3P48380 AC015818.7-201ENST00000428754 109 ntBASIC0.32□□□□□ -2.36
RFX3P48380 AC087499.7-201ENST00000441958 109 ntBASIC0.32□□□□□ -2.36
RFX3P48380 AC087499.4-201ENST00000448505 178 ntBASIC0.32□□□□□ -2.36
RFX3P48380 snoU13.21-201ENST00000459368 105 ntBASIC0.32□□□□□ -2.36
RFX3P48380 AC010655.3-201ENST00000478818 450 ntBASIC0.32□□□□□ -2.36
RFX3P48380 RNU6-875P-201ENST00000516488 106 ntBASIC0.32□□□□□ -2.36
RFX3P48380 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
RFX3P48380 SNORD115-40-201ENST00000606510 82 ntBASIC0.32□□□□□ -2.36
RFX3P48380 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.32□□□□□ -2.36
RFX3P48380 Y_RNA.197-201ENST00000364004 102 ntBASIC0.31□□□□□ -2.36
RFX3P48380 Y_RNA.286-201ENST00000364813 102 ntBASIC0.31□□□□□ -2.36
RFX3P48380 RNU6-125P-201ENST00000384505 107 ntBASIC0.31□□□□□ -2.36
RFX3P48380 MIR520H-201ENST00000385126 88 ntBASIC0.31□□□□□ -2.36
RFX3P48380 RNU6-205P-201ENST00000390858 107 ntBASIC0.31□□□□□ -2.36
RFX3P48380 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.31□□□□□ -2.36
RFX3P48380 MTND4LP30-201ENST00000454092 297 ntBASIC0.31□□□□□ -2.36
RFX3P48380 AC002350.1-201ENST00000490759 375 ntBASIC0.31□□□□□ -2.36
RFX3P48380 RNU7-25P-201ENST00000516544 62 ntBASIC0.31□□□□□ -2.36
RFX3P48380 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.31□□□□□ -2.36
RFX3P48380 MIR4662B-201ENST00000579498 81 ntBASIC0.31□□□□□ -2.36
RFX3P48380 C8orf59P2-201ENST00000603441 271 ntBASIC0.31□□□□□ -2.36
RFX3P48380 AL021707.8-201ENST00000609428 183 ntBASIC0.31□□□□□ -2.36
RFX3P48380 AC006157.1-201ENST00000611750 366 ntBASIC0.31□□□□□ -2.36
RFX3P48380 PART1_1.1-201ENST00000611761 217 ntBASIC0.31□□□□□ -2.36
RFX3P48380 MIR8087-201ENST00000612745 78 ntBASIC0.31□□□□□ -2.36
RFX3P48380 AC090625.1-201ENST00000357130 210 ntBASIC0.3□□□□□ -2.36
RFX3P48380 Y_RNA.80-201ENST00000362996 102 ntBASIC0.3□□□□□ -2.36
RFX3P48380 Y_RNA.424-201ENST00000384063 103 ntBASIC0.3□□□□□ -2.36
RFX3P48380 Y_RNA.485-201ENST00000384395 102 ntBASIC0.3□□□□□ -2.36
RFX3P48380 Y_RNA.529-201ENST00000384586 119 ntBASIC0.3□□□□□ -2.36
RFX3P48380 RNU6-308P-201ENST00000390957 107 ntBASIC0.3□□□□□ -2.36
RFX3P48380 RNU6-130P-201ENST00000411112 103 ntBASIC0.3□□□□□ -2.36
RFX3P48380 RNU6-764P-201ENST00000516396 105 ntBASIC0.3□□□□□ -2.36
RFX3P48380 RNU6-126P-201ENST00000516685 103 ntBASIC0.3□□□□□ -2.36
RFX3P48380 RNU7-149P-201ENST00000516739 59 ntBASIC0.3□□□□□ -2.36
RFX3P48380 MIR4771-2-201ENST00000577758 74 ntBASIC0.3□□□□□ -2.36
RFX3P48380 MIR4804-201ENST00000581683 73 ntBASIC0.3□□□□□ -2.36
RFX3P48380 MIR4771-1-201ENST00000582617 74 ntBASIC0.3□□□□□ -2.36
RFX3P48380 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.3□□□□□ -2.36
RFX3P48380 AC134878.1-201ENST00000619901 243 ntBASIC0.3□□□□□ -2.36
RFX3P48380 MIRLET7D-201ENST00000362263 87 ntBASIC0.29□□□□□ -2.36
RFX3P48380 MIR18A-201ENST00000362310 71 ntBASIC0.29□□□□□ -2.36
RFX3P48380 Y_RNA.14-201ENST00000362415 103 ntBASIC0.29□□□□□ -2.36
RFX3P48380 RNU4-90P-201ENST00000362773 141 ntBASIC0.29□□□□□ -2.36
RFX3P48380 SNORD113-8-201ENST00000363497 74 ntBASIC0.29□□□□□ -2.36
RFX3P48380 RNA5SP325-201ENST00000363756 130 ntBASIC0.29□□□□□ -2.36
RFX3P48380 Y_RNA.315-201ENST00000365117 102 ntBASIC0.29□□□□□ -2.36
RFX3P48380 Y_RNA.418-201ENST00000384029 102 ntBASIC0.29□□□□□ -2.36
RFX3P48380 Y_RNA.445-201ENST00000384168 102 ntBASIC0.29□□□□□ -2.36
RFX3P48380 SNORD38B-201ENST00000384690 67 ntBASIC0.29□□□□□ -2.36
RFX3P48380 RNU6-763P-201ENST00000390865 106 ntBASIC0.29□□□□□ -2.36
RFX3P48380 SNORD83.1-201ENST00000411362 77 ntBASIC0.29□□□□□ -2.36
RFX3P48380 MIR18B-201ENST00000454574 71 ntBASIC0.29□□□□□ -2.36
RFX3P48380 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC0.29□□□□□ -2.36
RFX3P48380 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.29□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms