Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC011921.3-201ENST00000605540 361 ntBASIC0.78□□□□□ -2.28
COL5A1P20908 AC027279.3-201ENST00000625055 122 ntBASIC0.78□□□□□ -2.28
COL5A1P20908 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.78□□□□□ -2.28
COL5A1P20908 Y_RNA.7-201ENST00000362352 102 ntBASIC0.78□□□□□ -2.29
COL5A1P20908 Y_RNA.83-201ENST00000363005 113 ntBASIC0.78□□□□□ -2.29
COL5A1P20908 RNY3P5-201ENST00000384127 102 ntBASIC0.78□□□□□ -2.29
COL5A1P20908 RNU6-950P-201ENST00000384651 107 ntBASIC0.78□□□□□ -2.29
COL5A1P20908 MIR597-201ENST00000384968 97 ntBASIC0.78□□□□□ -2.29
COL5A1P20908 RNU6ATAC2P-201ENST00000387943 126 ntBASIC0.78□□□□□ -2.29
COL5A1P20908 RNU6-440P-201ENST00000390882 105 ntBASIC0.78□□□□□ -2.29
COL5A1P20908 RNU6-131P-201ENST00000391144 107 ntBASIC0.78□□□□□ -2.29
COL5A1P20908 MTCO2P33-201ENST00000402100 465 ntBASIC0.78□□□□□ -2.29
COL5A1P20908 AC023449.1-201ENST00000454464 154 ntBASIC0.78□□□□□ -2.29
COL5A1P20908 AC091959.1-201ENST00000495857 238 ntBASIC0.78□□□□□ -2.29
COL5A1P20908 RNY3P16-201ENST00000516338 101 ntBASIC0.78□□□□□ -2.29
COL5A1P20908 RNU11-2P-201ENST00000516898 142 ntBASIC0.78□□□□□ -2.29
COL5A1P20908 SNORA44.1-201ENST00000517031 108 ntBASIC0.78□□□□□ -2.29
COL5A1P20908 RNU7-128P-201ENST00000517247 62 ntBASIC0.78□□□□□ -2.29
COL5A1P20908 MIR2681-201ENST00000581814 105 ntBASIC0.78□□□□□ -2.29
COL5A1P20908 AC004832.4-201ENST00000608952 331 ntBASIC0.78□□□□□ -2.29
COL5A1P20908 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC0.78□□□□□ -2.29
COL5A1P20908 uc_338.4-201ENST00000616635 176 ntBASIC0.78□□□□□ -2.29
COL5A1P20908 AC068647.2-201ENST00000637380 353 ntBASIC0.78□□□□□ -2.29
COL5A1P20908 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
COL5A1P20908 AC008163.1-202ENST00000636004 2889 ntBASIC0.77□□□□□ -2.29
COL5A1P20908 Y_RNA.242-201ENST00000364473 110 ntBASIC0.77□□□□□ -2.29
COL5A1P20908 Y_RNA.265-201ENST00000364677 108 ntBASIC0.77□□□□□ -2.29
COL5A1P20908 RNU6-211P-201ENST00000384047 107 ntBASIC0.77□□□□□ -2.29
COL5A1P20908 Y_RNA.785-201ENST00000384290 109 ntBASIC0.77□□□□□ -2.29
COL5A1P20908 RNU6-136P-201ENST00000384663 107 ntBASIC0.77□□□□□ -2.29
COL5A1P20908 RNU6-493P-201ENST00000391321 108 ntBASIC0.77□□□□□ -2.29
COL5A1P20908 Y_RNA.626-201ENST00000411288 95 ntBASIC0.77□□□□□ -2.29
COL5A1P20908 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.77□□□□□ -2.29
COL5A1P20908 RNU6-191P-201ENST00000516295 94 ntBASIC0.77□□□□□ -2.29
COL5A1P20908 AP002392.1-201ENST00000537692 208 ntBASIC0.77□□□□□ -2.29
COL5A1P20908 AC133485.1-201ENST00000567176 124 ntBASIC0.77□□□□□ -2.29
COL5A1P20908 AC138907.6-201ENST00000568401 126 ntBASIC0.77□□□□□ -2.29
COL5A1P20908 AL929325.1-201ENST00000603096 117 ntBASIC0.77□□□□□ -2.29
COL5A1P20908 AC021506.2-201ENST00000612354 169 ntBASIC0.77□□□□□ -2.29
COL5A1P20908 SNORA33-201ENST00000363664 130 ntBASIC0.76□□□□□ -2.29
COL5A1P20908 RNU6-414P-201ENST00000363705 104 ntBASIC0.76□□□□□ -2.29
COL5A1P20908 snoU2-30.1-201ENST00000365012 70 ntBASIC0.76□□□□□ -2.29
COL5A1P20908 RNU6-1318P-201ENST00000365389 103 ntBASIC0.76□□□□□ -2.29
COL5A1P20908 Y_RNA.562-201ENST00000384695 113 ntBASIC0.76□□□□□ -2.29
COL5A1P20908 MIR1267-201ENST00000408723 78 ntBASIC0.76□□□□□ -2.29
COL5A1P20908 RNA5SP127-201ENST00000411051 133 ntBASIC0.76□□□□□ -2.29
COL5A1P20908 PGBD4P5-201ENST00000445958 426 ntBASIC0.76□□□□□ -2.29
COL5A1P20908 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.76□□□□□ -2.29
COL5A1P20908 RNVU1-2-201ENST00000516326 135 ntBASIC0.76□□□□□ -2.29
COL5A1P20908 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.76□□□□□ -2.29
COL5A1P20908 RPL23AP91-201ENST00000569211 455 ntBASIC0.76□□□□□ -2.29
COL5A1P20908 MIR4744-201ENST00000581563 82 ntBASIC0.76□□□□□ -2.29
COL5A1P20908 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.76□□□□□ -2.29
COL5A1P20908 MIR8074-201ENST00000615081 81 ntBASIC0.76□□□□□ -2.29
COL5A1P20908 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.76□□□□□ -2.29
COL5A1P20908 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC0.76□□□□□ -2.29
COL5A1P20908 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.76□□□□□ -2.29
COL5A1P20908 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
COL5A1P20908 RNU6-1272P-201ENST00000362776 107 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 Y_RNA.253-201ENST00000364562 112 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 RNU6-424P-201ENST00000384367 105 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 SNORD38C-201ENST00000384381 69 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 SNORA79-201ENST00000408376 140 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 RNU5E-9P-201ENST00000411164 104 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 PIGPP3-201ENST00000425307 415 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 OR9P1P-201ENST00000496431 281 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 SCARNA8-201ENST00000515924 131 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 RNU4-57P-201ENST00000515980 135 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 RNU6-111P-201ENST00000517179 105 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 SUMO2P16-201ENST00000519475 264 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 AL021707.8-201ENST00000609428 183 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 AL591926.4-201ENST00000616895 298 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 Y_RNA.66-201ENST00000362862 102 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 RNU6-1205P-201ENST00000363625 106 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 RNU6-103P-201ENST00000363686 107 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 Y_RNA.293-201ENST00000364908 93 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 RNU6-969P-201ENST00000383900 105 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 Y_RNA.518-201ENST00000384552 113 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 MIR626-201ENST00000385032 94 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 Y_RNA.587-201ENST00000391210 103 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 RNU2-64P-201ENST00000411315 191 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 MLLT10P1-201ENST00000418346 262 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 Y_RNA.644-201ENST00000459006 113 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.75□□□□□ -2.29
COL5A1P20908 RNU6-693P-201ENST00000516134 107 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 Y_RNA.674-201ENST00000516362 113 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 RNU6-197P-201ENST00000516680 100 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 RNU6-126P-201ENST00000516685 103 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 AC130289.1-201ENST00000577321 73 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC0.75□□□□□ -2.29
COL5A1P20908 MIR4431-201ENST00000579990 94 ntBASIC0.75□□□□□ -2.29
COL5A1P20908 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC0.75□□□□□ -2.29
COL5A1P20908 Y_RNA.8-201ENST00000362353 102 ntBASIC0.74□□□□□ -2.29
COL5A1P20908 Y_RNA.75-201ENST00000362927 97 ntBASIC0.74□□□□□ -2.29
COL5A1P20908 RNU6-923P-201ENST00000364753 107 ntBASIC0.74□□□□□ -2.29
COL5A1P20908 SNORD1A-201ENST00000364968 72 ntBASIC0.74□□□□□ -2.29
COL5A1P20908 MIR548A2-201ENST00000384956 97 ntBASIC0.74□□□□□ -2.29
COL5A1P20908 RNU7-28P-201ENST00000516759 62 ntBASIC0.74□□□□□ -2.29
COL5A1P20908 RNU6-1096P-201ENST00000517089 102 ntBASIC0.74□□□□□ -2.29
COL5A1P20908 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms