Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC055731.1-201ENST00000474387 401 ntBASIC2.74□□□□□ -1.97
LIG1P18858 AC114811.1-201ENST00000507207 168 ntBASIC2.74□□□□□ -1.97
LIG1P18858 RNU6-830P-201ENST00000516353 107 ntBASIC2.74□□□□□ -1.97
LIG1P18858 RNA5SP281-201ENST00000516504 135 ntBASIC2.74□□□□□ -1.97
LIG1P18858 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.74□□□□□ -1.97
LIG1P18858 MIR3683-201ENST00000580847 82 ntBASIC2.74□□□□□ -1.97
LIG1P18858 AC067747.1-201ENST00000608026 250 ntBASIC2.74□□□□□ -1.97
LIG1P18858 AP001318.4-201ENST00000616637 121 ntBASIC2.74□□□□□ -1.97
LIG1P18858 U4.3-201ENST00000621047 82 ntBASIC2.74□□□□□ -1.97
LIG1P18858 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
LIG1P18858 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
LIG1P18858 RNU6-1113P-201ENST00000384348 107 ntBASIC2.73□□□□□ -1.97
LIG1P18858 SNORD38C-201ENST00000384381 69 ntBASIC2.73□□□□□ -1.97
LIG1P18858 MIR17-201ENST00000385012 84 ntBASIC2.73□□□□□ -1.97
LIG1P18858 MT-TI-201ENST00000387365 69 ntBASIC2.73□□□□□ -1.97
LIG1P18858 U8.17-201ENST00000391292 132 ntBASIC2.73□□□□□ -1.97
LIG1P18858 STAG3L5P-204ENST00000443759 179 ntBASIC2.73□□□□□ -1.97
LIG1P18858 AL513328.1-201ENST00000446460 224 ntBASIC2.73□□□□□ -1.97
LIG1P18858 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.73□□□□□ -1.97
LIG1P18858 SUMO2P16-201ENST00000519475 264 ntBASIC2.73□□□□□ -1.97
LIG1P18858 IGKV3-31-201ENST00000523109 329 ntBASIC2.73□□□□□ -1.97
LIG1P18858 AC069114.2-201ENST00000604699 304 ntBASIC2.73□□□□□ -1.97
LIG1P18858 DLEU2_5.2-201ENST00000610606 84 ntBASIC2.73□□□□□ -1.97
LIG1P18858 AC091932.4-201ENST00000623386 200 ntBASIC2.73□□□□□ -1.97
LIG1P18858 RNU6-163P-201ENST00000384396 106 ntBASIC2.72□□□□□ -1.97
LIG1P18858 RNY4P30-201ENST00000410216 95 ntBASIC2.72□□□□□ -1.97
LIG1P18858 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.72□□□□□ -1.97
LIG1P18858 AC069257.2-201ENST00000441819 155 ntBASIC2.72□□□□□ -1.97
LIG1P18858 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
LIG1P18858 RNU7-164P-201ENST00000459221 62 ntBASIC2.72□□□□□ -1.97
LIG1P18858 RPS27P21-201ENST00000486977 252 ntBASIC2.72□□□□□ -1.97
LIG1P18858 AC008413.1-201ENST00000511864 177 ntBASIC2.72□□□□□ -1.97
LIG1P18858 RNU2-19P-201ENST00000517288 84 ntBASIC2.72□□□□□ -1.97
LIG1P18858 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.72□□□□□ -1.97
LIG1P18858 MIR4287-201ENST00000579398 78 ntBASIC2.72□□□□□ -1.97
LIG1P18858 MIR4305-201ENST00000583252 102 ntBASIC2.72□□□□□ -1.97
LIG1P18858 AC002984.1-201ENST00000591692 448 ntBASIC2.72□□□□□ -1.97
LIG1P18858 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
LIG1P18858 RNU6-640P-201ENST00000363693 105 ntBASIC2.71□□□□□ -1.98
LIG1P18858 RNU6-414P-201ENST00000363705 104 ntBASIC2.71□□□□□ -1.98
LIG1P18858 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
LIG1P18858 RNA5SP508-201ENST00000411327 119 ntBASIC2.71□□□□□ -1.98
LIG1P18858 SNORA31.10-201ENST00000516482 106 ntBASIC2.71□□□□□ -1.98
LIG1P18858 RNU6-1116P-201ENST00000517269 99 ntBASIC2.71□□□□□ -1.98
LIG1P18858 MIR5009-201ENST00000578736 100 ntBASIC2.71□□□□□ -1.98
LIG1P18858 AC022202.1-201ENST00000613515 211 ntBASIC2.71□□□□□ -1.98
LIG1P18858 RNA5SP289-201ENST00000362332 137 ntBASIC2.7□□□□□ -1.98
LIG1P18858 SNORD115-3-201ENST00000363100 82 ntBASIC2.7□□□□□ -1.98
LIG1P18858 U8.6-201ENST00000364939 135 ntBASIC2.7□□□□□ -1.98
LIG1P18858 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC2.7□□□□□ -1.98
LIG1P18858 RNU7-123P-201ENST00000515911 60 ntBASIC2.7□□□□□ -1.98
LIG1P18858 AC068339.1-201ENST00000526965 141 ntBASIC2.7□□□□□ -1.98
LIG1P18858 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.7□□□□□ -1.98
LIG1P18858 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.7□□□□□ -1.98
LIG1P18858 AL596211.1-201ENST00000569873 2277 ntBASIC2.7□□□□□ -1.98
LIG1P18858 RNU6-1104P-201ENST00000384723 104 ntBASIC2.69□□□□□ -1.98
LIG1P18858 RN7SKP200-201ENST00000410564 320 ntBASIC2.69□□□□□ -1.98
LIG1P18858 BX510359.4-201ENST00000423750 193 ntBASIC2.69□□□□□ -1.98
LIG1P18858 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.69□□□□□ -1.98
LIG1P18858 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
LIG1P18858 MIR4435-1-201ENST00000582552 80 ntBASIC2.69□□□□□ -1.98
LIG1P18858 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
LIG1P18858 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
LIG1P18858 AC005336.3-201ENST00000623833 2679 ntBASIC2.69□□□□□ -1.98
LIG1P18858 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
LIG1P18858 RNU6-833P-201ENST00000363486 107 ntBASIC2.68□□□□□ -1.98
LIG1P18858 SNORA27-201ENST00000384323 126 ntBASIC2.68□□□□□ -1.98
LIG1P18858 Y_RNA.544-201ENST00000384650 113 ntBASIC2.68□□□□□ -1.98
LIG1P18858 RNU6-950P-201ENST00000384651 107 ntBASIC2.68□□□□□ -1.98
LIG1P18858 MIR548D2-201ENST00000384955 97 ntBASIC2.68□□□□□ -1.98
LIG1P18858 AL359511.1-201ENST00000402970 211 ntBASIC2.68□□□□□ -1.98
LIG1P18858 AC015922.2-201ENST00000435593 184 ntBASIC2.68□□□□□ -1.98
LIG1P18858 AC026436.1-201ENST00000510537 270 ntBASIC2.68□□□□□ -1.98
LIG1P18858 RNA5SP137-201ENST00000516833 135 ntBASIC2.68□□□□□ -1.98
LIG1P18858 MIR3163-201ENST00000581592 73 ntBASIC2.68□□□□□ -1.98
LIG1P18858 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.68□□□□□ -1.98
LIG1P18858 AC016717.2-201ENST00000609089 5141 ntBASIC2.67□□□□□ -1.98
LIG1P18858 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.67□□□□□ -1.98
LIG1P18858 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.67□□□□□ -1.98
LIG1P18858 Y_RNA.78-201ENST00000362970 110 ntBASIC2.67□□□□□ -1.98
LIG1P18858 SNORA63D-201ENST00000364359 132 ntBASIC2.67□□□□□ -1.98
LIG1P18858 Y_RNA.344-201ENST00000365381 112 ntBASIC2.67□□□□□ -1.98
LIG1P18858 RNU6-424P-201ENST00000384367 105 ntBASIC2.67□□□□□ -1.98
LIG1P18858 AL034345.1-201ENST00000407768 123 ntBASIC2.67□□□□□ -1.98
LIG1P18858 AC234781.5-201ENST00000508429 271 ntBASIC2.67□□□□□ -1.98
LIG1P18858 RNU2-35P-201ENST00000516446 142 ntBASIC2.67□□□□□ -1.98
LIG1P18858 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.67□□□□□ -1.98
LIG1P18858 MIR5094-201ENST00000578766 85 ntBASIC2.67□□□□□ -1.98
LIG1P18858 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.67□□□□□ -1.98
LIG1P18858 AC046143.2-201ENST00000609789 160 ntBASIC2.67□□□□□ -1.98
LIG1P18858 MIR1291-201ENST00000627649 87 ntBASIC2.67□□□□□ -1.98
LIG1P18858 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.67□□□□□ -1.98
LIG1P18858 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.66□□□□□ -1.98
LIG1P18858 ICE2P2-201ENST00000483823 2787 ntBASIC2.66□□□□□ -1.98
LIG1P18858 SNORD115-34-201ENST00000362441 82 ntBASIC2.66□□□□□ -1.98
LIG1P18858 SNORD115-12-201ENST00000362583 82 ntBASIC2.66□□□□□ -1.98
LIG1P18858 SNORD115-29-201ENST00000362834 82 ntBASIC2.66□□□□□ -1.98
LIG1P18858 SNORD115-9-201ENST00000362912 82 ntBASIC2.66□□□□□ -1.98
LIG1P18858 SNORD115-21-201ENST00000362963 81 ntBASIC2.66□□□□□ -1.98
LIG1P18858 SNORD115-14-201ENST00000363090 81 ntBASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms