Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1□□□□□ -2.25
PCDHGA1Q9Y5H4 Y_RNA.210-201ENST00000364161 110 ntBASIC0.99□□□□□ -2.25
PCDHGA1Q9Y5H4 RNU6-806P-201ENST00000365147 105 ntBASIC0.99□□□□□ -2.25
PCDHGA1Q9Y5H4 RNU6-326P-201ENST00000365480 107 ntBASIC0.99□□□□□ -2.25
PCDHGA1Q9Y5H4 RNU6-442P-201ENST00000383968 104 ntBASIC0.99□□□□□ -2.25
PCDHGA1Q9Y5H4 Y_RNA.541-201ENST00000384640 113 ntBASIC0.99□□□□□ -2.25
PCDHGA1Q9Y5H4 MIR215-201ENST00000384858 110 ntBASIC0.99□□□□□ -2.25
PCDHGA1Q9Y5H4 Y_RNA.637-201ENST00000459424 114 ntBASIC0.99□□□□□ -2.25
PCDHGA1Q9Y5H4 RNU6-1007P-201ENST00000516586 107 ntBASIC0.99□□□□□ -2.25
PCDHGA1Q9Y5H4 RNU2-31P-201ENST00000516954 155 ntBASIC0.99□□□□□ -2.25
PCDHGA1Q9Y5H4 AP003716.2-201ENST00000528260 108 ntBASIC0.99□□□□□ -2.25
PCDHGA1Q9Y5H4 MIR4764-201ENST00000580680 88 ntBASIC0.99□□□□□ -2.25
PCDHGA1Q9Y5H4 AC008507.4-201ENST00000585464 127 ntBASIC0.99□□□□□ -2.25
PCDHGA1Q9Y5H4 AL512605.2-201ENST00000592972 256 ntBASIC0.99□□□□□ -2.25
PCDHGA1Q9Y5H4 Y_RNA.26-201ENST00000362539 101 ntBASIC0.98□□□□□ -2.25
PCDHGA1Q9Y5H4 Y_RNA.153-201ENST00000363615 91 ntBASIC0.98□□□□□ -2.25
PCDHGA1Q9Y5H4 RNA5SP325-201ENST00000363756 130 ntBASIC0.98□□□□□ -2.25
PCDHGA1Q9Y5H4 SNORA33.2-201ENST00000365413 134 ntBASIC0.98□□□□□ -2.25
PCDHGA1Q9Y5H4 SNORD38C-201ENST00000384381 69 ntBASIC0.98□□□□□ -2.25
PCDHGA1Q9Y5H4 RPL21P38-201ENST00000418090 167 ntBASIC0.98□□□□□ -2.25
PCDHGA1Q9Y5H4 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.98□□□□□ -2.25
PCDHGA1Q9Y5H4 SNORD11-201ENST00000459124 84 ntBASIC0.98□□□□□ -2.25
PCDHGA1Q9Y5H4 RNU7-90P-201ENST00000459216 62 ntBASIC0.98□□□□□ -2.25
PCDHGA1Q9Y5H4 RNU7-21P-201ENST00000459430 62 ntBASIC0.98□□□□□ -2.25
PCDHGA1Q9Y5H4 RNU6-830P-201ENST00000516353 107 ntBASIC0.98□□□□□ -2.25
PCDHGA1Q9Y5H4 AL356055.1-201ENST00000602528 446 ntBASIC0.98□□□□□ -2.25
PCDHGA1Q9Y5H4 SNORD114-21-201ENST00000606412 72 ntBASIC0.98□□□□□ -2.25
PCDHGA1Q9Y5H4 Y_RNA.64-201ENST00000362845 102 ntBASIC0.97□□□□□ -2.25
PCDHGA1Q9Y5H4 RNA5SP264-201ENST00000363115 107 ntBASIC0.97□□□□□ -2.25
PCDHGA1Q9Y5H4 RNU6-1205P-201ENST00000363625 106 ntBASIC0.97□□□□□ -2.25
PCDHGA1Q9Y5H4 RNU6-268P-201ENST00000364174 107 ntBASIC0.97□□□□□ -2.25
PCDHGA1Q9Y5H4 RNU4-38P-201ENST00000364472 129 ntBASIC0.97□□□□□ -2.25
PCDHGA1Q9Y5H4 RNU6-1187P-201ENST00000364771 110 ntBASIC0.97□□□□□ -2.25
PCDHGA1Q9Y5H4 RNU1-36P-201ENST00000365130 165 ntBASIC0.97□□□□□ -2.25
PCDHGA1Q9Y5H4 RNU6-1227P-201ENST00000383981 107 ntBASIC0.97□□□□□ -2.25
PCDHGA1Q9Y5H4 SNORA53-201ENST00000391141 249 ntBASIC0.97□□□□□ -2.25
PCDHGA1Q9Y5H4 RNU6-985P-201ENST00000410182 104 ntBASIC0.97□□□□□ -2.25
PCDHGA1Q9Y5H4 AC005534.2-201ENST00000431047 433 ntBASIC0.97□□□□□ -2.25
PCDHGA1Q9Y5H4 RNU7-41P-201ENST00000515917 61 ntBASIC0.97□□□□□ -2.25
PCDHGA1Q9Y5H4 AP003733.2-201ENST00000529409 171 ntBASIC0.97□□□□□ -2.25
PCDHGA1Q9Y5H4 CYP3A137P-201ENST00000562436 69 ntBASIC0.97□□□□□ -2.25
PCDHGA1Q9Y5H4 AL020996.3-201ENST00000606617 222 ntBASIC0.97□□□□□ -2.25
PCDHGA1Q9Y5H4 AC013791.1-201ENST00000616619 62 ntBASIC0.97□□□□□ -2.25
PCDHGA1Q9Y5H4 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.96□□□□□ -2.26
PCDHGA1Q9Y5H4 Y_RNA.11-201ENST00000362375 109 ntBASIC0.96□□□□□ -2.26
PCDHGA1Q9Y5H4 Y_RNA.242-201ENST00000364473 110 ntBASIC0.96□□□□□ -2.26
PCDHGA1Q9Y5H4 RNU1-133P-201ENST00000364867 167 ntBASIC0.96□□□□□ -2.26
PCDHGA1Q9Y5H4 MIR802-201ENST00000390235 94 ntBASIC0.96□□□□□ -2.26
PCDHGA1Q9Y5H4 SNORA75.2-201ENST00000391138 150 ntBASIC0.96□□□□□ -2.26
PCDHGA1Q9Y5H4 SNORA75.3-201ENST00000391231 150 ntBASIC0.96□□□□□ -2.26
PCDHGA1Q9Y5H4 AC044792.1-201ENST00000593294 196 ntBASIC0.96□□□□□ -2.26
PCDHGA1Q9Y5H4 AC037487.3-201ENST00000606668 112 ntBASIC0.96□□□□□ -2.26
PCDHGA1Q9Y5H4 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.96□□□□□ -2.26
PCDHGA1Q9Y5H4 AC006441.5-201ENST00000612680 209 ntBASIC0.96□□□□□ -2.26
PCDHGA1Q9Y5H4 Pinc.1-201ENST00000616452 154 ntBASIC0.96□□□□□ -2.26
PCDHGA1Q9Y5H4 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.96□□□□□ -2.26
PCDHGA1Q9Y5H4 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
PCDHGA1Q9Y5H4 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.95□□□□□ -2.26
PCDHGA1Q9Y5H4 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.95□□□□□ -2.26
PCDHGA1Q9Y5H4 SNORD72-201ENST00000390994 80 ntBASIC0.95□□□□□ -2.26
PCDHGA1Q9Y5H4 AL603910.2-201ENST00000407268 136 ntBASIC0.95□□□□□ -2.26
PCDHGA1Q9Y5H4 AL731563.1-201ENST00000442202 214 ntBASIC0.95□□□□□ -2.26
PCDHGA1Q9Y5H4 RPL39P28-201ENST00000465655 155 ntBASIC0.95□□□□□ -2.26
PCDHGA1Q9Y5H4 AC091959.1-201ENST00000495857 238 ntBASIC0.95□□□□□ -2.26
PCDHGA1Q9Y5H4 SNORA27.4-201ENST00000516650 95 ntBASIC0.95□□□□□ -2.26
PCDHGA1Q9Y5H4 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.95□□□□□ -2.26
PCDHGA1Q9Y5H4 MIR5692C2-201ENST00000577959 77 ntBASIC0.95□□□□□ -2.26
PCDHGA1Q9Y5H4 MIR548AR-201ENST00000582191 57 ntBASIC0.95□□□□□ -2.26
PCDHGA1Q9Y5H4 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.95□□□□□ -2.26
PCDHGA1Q9Y5H4 RN7SL793P-201ENST00000583259 296 ntBASIC0.95□□□□□ -2.26
PCDHGA1Q9Y5H4 AC008163.1-202ENST00000636004 2889 ntBASIC0.95□□□□□ -2.26
PCDHGA1Q9Y5H4 SNORA25.1-201ENST00000362326 128 ntBASIC0.94□□□□□ -2.26
PCDHGA1Q9Y5H4 RNU6-1272P-201ENST00000362776 107 ntBASIC0.94□□□□□ -2.26
PCDHGA1Q9Y5H4 RNU6-639P-201ENST00000384074 107 ntBASIC0.94□□□□□ -2.26
PCDHGA1Q9Y5H4 FABP5P4-201ENST00000437203 171 ntBASIC0.94□□□□□ -2.26
PCDHGA1Q9Y5H4 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.94□□□□□ -2.26
PCDHGA1Q9Y5H4 AC103810.9-201ENST00000606688 112 ntBASIC0.94□□□□□ -2.26
PCDHGA1Q9Y5H4 AC022140.2-201ENST00000623500 188 ntBASIC0.94□□□□□ -2.26
PCDHGA1Q9Y5H4 AC068700.1-201ENST00000565862 3754 ntBASIC0.93□□□□□ -2.26
PCDHGA1Q9Y5H4 Y_RNA.84-201ENST00000363011 104 ntBASIC0.93□□□□□ -2.26
PCDHGA1Q9Y5H4 RNA5SP48-201ENST00000363969 126 ntBASIC0.93□□□□□ -2.26
PCDHGA1Q9Y5H4 Y_RNA.205-201ENST00000364128 113 ntBASIC0.93□□□□□ -2.26
PCDHGA1Q9Y5H4 Y_RNA.217-201ENST00000364214 105 ntBASIC0.93□□□□□ -2.26
PCDHGA1Q9Y5H4 RNU6-514P-201ENST00000384208 107 ntBASIC0.93□□□□□ -2.26
PCDHGA1Q9Y5H4 RNA5SP496-201ENST00000391240 109 ntBASIC0.93□□□□□ -2.26
PCDHGA1Q9Y5H4 RNU6-383P-201ENST00000410864 94 ntBASIC0.93□□□□□ -2.26
PCDHGA1Q9Y5H4 RNU2-64P-201ENST00000411315 191 ntBASIC0.93□□□□□ -2.26
PCDHGA1Q9Y5H4 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.93□□□□□ -2.26
PCDHGA1Q9Y5H4 Y_RNA.641-201ENST00000459414 105 ntBASIC0.93□□□□□ -2.26
PCDHGA1Q9Y5H4 PDCD5P2-201ENST00000507570 312 ntBASIC0.93□□□□□ -2.26
PCDHGA1Q9Y5H4 RNA5SP436-201ENST00000516020 115 ntBASIC0.93□□□□□ -2.26
PCDHGA1Q9Y5H4 RNU6-1153P-201ENST00000516760 105 ntBASIC0.93□□□□□ -2.26
PCDHGA1Q9Y5H4 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.93□□□□□ -2.26
PCDHGA1Q9Y5H4 UBE2WP1-201ENST00000362030 340 ntBASIC0.92□□□□□ -2.26
PCDHGA1Q9Y5H4 MIR103A2-201ENST00000362154 78 ntBASIC0.92□□□□□ -2.26
PCDHGA1Q9Y5H4 Y_RNA.16-201ENST00000362421 102 ntBASIC0.92□□□□□ -2.26
PCDHGA1Q9Y5H4 SNORA25.3-201ENST00000363205 127 ntBASIC0.92□□□□□ -2.26
PCDHGA1Q9Y5H4 RNU6-662P-201ENST00000384253 104 ntBASIC0.92□□□□□ -2.26
PCDHGA1Q9Y5H4 SNORD28B-201ENST00000390993 75 ntBASIC0.92□□□□□ -2.26
PCDHGA1Q9Y5H4 U8.17-201ENST00000391292 132 ntBASIC0.92□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 468.2 ms