Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 Y_RNA.226-201ENST00000364337 114 ntBASIC1.01□□□□□ -2.25
VPS28Q9UK41 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.01□□□□□ -2.25
VPS28Q9UK41 Y_RNA.637-201ENST00000459424 114 ntBASIC1.01□□□□□ -2.25
VPS28Q9UK41 AC098869.1-201ENST00000481627 292 ntBASIC1.01□□□□□ -2.25
VPS28Q9UK41 AC091959.1-201ENST00000495857 238 ntBASIC1.01□□□□□ -2.25
VPS28Q9UK41 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC1.01□□□□□ -2.25
VPS28Q9UK41 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.01□□□□□ -2.25
VPS28Q9UK41 MIR367-201ENST00000362299 68 ntBASIC1□□□□□ -2.25
VPS28Q9UK41 Y_RNA.191-201ENST00000363972 113 ntBASIC1□□□□□ -2.25
VPS28Q9UK41 RNU1-36P-201ENST00000365130 165 ntBASIC1□□□□□ -2.25
VPS28Q9UK41 SNORA1.2-201ENST00000365189 134 ntBASIC1□□□□□ -2.25
VPS28Q9UK41 RNA5SP496-201ENST00000391240 109 ntBASIC1□□□□□ -2.25
VPS28Q9UK41 RPL21P38-201ENST00000418090 167 ntBASIC1□□□□□ -2.25
VPS28Q9UK41 AC023827.1-201ENST00000569247 97 ntBASIC1□□□□□ -2.25
VPS28Q9UK41 MIR5692C2-201ENST00000577959 77 ntBASIC1□□□□□ -2.25
VPS28Q9UK41 AC131055.1-201ENST00000584626 316 ntBASIC1□□□□□ -2.25
VPS28Q9UK41 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1□□□□□ -2.25
VPS28Q9UK41 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.99□□□□□ -2.25
VPS28Q9UK41 MIR215-201ENST00000384858 110 ntBASIC0.99□□□□□ -2.25
VPS28Q9UK41 MIR1287-201ENST00000408492 90 ntBASIC0.99□□□□□ -2.25
VPS28Q9UK41 RPS3AP1-201ENST00000413190 320 ntBASIC0.99□□□□□ -2.25
VPS28Q9UK41 BTF3P11-201ENST00000426582 477 ntBASIC0.99□□□□□ -2.25
VPS28Q9UK41 RNU6-113P-201ENST00000516653 101 ntBASIC0.99□□□□□ -2.25
VPS28Q9UK41 AP003733.2-201ENST00000529409 171 ntBASIC0.99□□□□□ -2.25
VPS28Q9UK41 AC109810.1-201ENST00000534066 224 ntBASIC0.99□□□□□ -2.25
VPS28Q9UK41 MIR4724-201ENST00000579485 89 ntBASIC0.99□□□□□ -2.25
VPS28Q9UK41 AC022140.2-201ENST00000623500 188 ntBASIC0.99□□□□□ -2.25
VPS28Q9UK41 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC0.99□□□□□ -2.25
VPS28Q9UK41 SNORD114-22-201ENST00000365423 72 ntBASIC0.98□□□□□ -2.25
VPS28Q9UK41 SNORA51.10-201ENST00000384418 136 ntBASIC0.98□□□□□ -2.25
VPS28Q9UK41 RNU6-383P-201ENST00000410864 94 ntBASIC0.98□□□□□ -2.25
VPS28Q9UK41 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.98□□□□□ -2.25
VPS28Q9UK41 AL392103.1-201ENST00000447000 198 ntBASIC0.98□□□□□ -2.25
VPS28Q9UK41 SCARNA8-201ENST00000515924 131 ntBASIC0.98□□□□□ -2.25
VPS28Q9UK41 RNA5SP255-201ENST00000516370 107 ntBASIC0.98□□□□□ -2.25
VPS28Q9UK41 RNU7-181P-201ENST00000517234 74 ntBASIC0.98□□□□□ -2.25
VPS28Q9UK41 AL356055.1-201ENST00000602528 446 ntBASIC0.98□□□□□ -2.25
VPS28Q9UK41 AL021707.8-201ENST00000609428 183 ntBASIC0.98□□□□□ -2.25
VPS28Q9UK41 uc_338.4-201ENST00000616635 176 ntBASIC0.98□□□□□ -2.25
VPS28Q9UK41 MIR6767-201ENST00000637302 66 ntBASIC0.98□□□□□ -2.25
VPS28Q9UK41 RNU1-93P-201ENST00000364704 169 ntBASIC0.97□□□□□ -2.25
VPS28Q9UK41 RNU6-1187P-201ENST00000364771 110 ntBASIC0.97□□□□□ -2.25
VPS28Q9UK41 Y_RNA.293-201ENST00000364908 93 ntBASIC0.97□□□□□ -2.25
VPS28Q9UK41 RNU6-806P-201ENST00000365147 105 ntBASIC0.97□□□□□ -2.25
VPS28Q9UK41 Y_RNA.537-201ENST00000384626 109 ntBASIC0.97□□□□□ -2.25
VPS28Q9UK41 RNU4-57P-201ENST00000515980 135 ntBASIC0.97□□□□□ -2.25
VPS28Q9UK41 SNORA27.4-201ENST00000516650 95 ntBASIC0.97□□□□□ -2.25
VPS28Q9UK41 RNU7-149P-201ENST00000516739 59 ntBASIC0.97□□□□□ -2.25
VPS28Q9UK41 MIR4452-201ENST00000583004 71 ntBASIC0.97□□□□□ -2.25
VPS28Q9UK41 Y_RNA.217-201ENST00000364214 105 ntBASIC0.96□□□□□ -2.26
VPS28Q9UK41 Y_RNA.224-201ENST00000364308 111 ntBASIC0.96□□□□□ -2.26
VPS28Q9UK41 RNU6-662P-201ENST00000384253 104 ntBASIC0.96□□□□□ -2.26
VPS28Q9UK41 MIR570-201ENST00000384917 97 ntBASIC0.96□□□□□ -2.26
VPS28Q9UK41 MIR1302-7-201ENST00000408841 72 ntBASIC0.96□□□□□ -2.26
VPS28Q9UK41 RNU2-64P-201ENST00000411315 191 ntBASIC0.96□□□□□ -2.26
VPS28Q9UK41 AC005534.2-201ENST00000431047 433 ntBASIC0.96□□□□□ -2.26
VPS28Q9UK41 AL731563.1-201ENST00000442202 214 ntBASIC0.96□□□□□ -2.26
VPS28Q9UK41 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.96□□□□□ -2.26
VPS28Q9UK41 Y_RNA.641-201ENST00000459414 105 ntBASIC0.96□□□□□ -2.26
VPS28Q9UK41 ACA64.5-201ENST00000516207 127 ntBASIC0.96□□□□□ -2.26
VPS28Q9UK41 MIR2115-201ENST00000516657 100 ntBASIC0.96□□□□□ -2.26
VPS28Q9UK41 AC106800.4-201ENST00000614905 153 ntBASIC0.96□□□□□ -2.26
VPS28Q9UK41 Y_RNA.64-201ENST00000362845 102 ntBASIC0.95□□□□□ -2.26
VPS28Q9UK41 Y_RNA.153-201ENST00000363615 91 ntBASIC0.95□□□□□ -2.26
VPS28Q9UK41 RNU6-1138P-201ENST00000365359 106 ntBASIC0.95□□□□□ -2.26
VPS28Q9UK41 MIR532-201ENST00000385025 91 ntBASIC0.95□□□□□ -2.26
VPS28Q9UK41 MIR548O-201ENST00000408583 114 ntBASIC0.95□□□□□ -2.26
VPS28Q9UK41 RNU6-197P-201ENST00000516680 100 ntBASIC0.95□□□□□ -2.26
VPS28Q9UK41 Y_RNA.701-201ENST00000516812 110 ntBASIC0.95□□□□□ -2.26
VPS28Q9UK41 AL049861.1-201ENST00000603130 150 ntBASIC0.95□□□□□ -2.26
VPS28Q9UK41 AC211469.2-201ENST00000605461 205 ntBASIC0.95□□□□□ -2.26
VPS28Q9UK41 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.95□□□□□ -2.26
VPS28Q9UK41 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.95□□□□□ -2.26
VPS28Q9UK41 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.95□□□□□ -2.26
VPS28Q9UK41 Y_RNA.26-201ENST00000362539 101 ntBASIC0.94□□□□□ -2.26
VPS28Q9UK41 SNORA33.2-201ENST00000365413 134 ntBASIC0.94□□□□□ -2.26
VPS28Q9UK41 SNORD111-201ENST00000408139 94 ntBASIC0.94□□□□□ -2.26
VPS28Q9UK41 RNU6-847P-201ENST00000411115 108 ntBASIC0.94□□□□□ -2.26
VPS28Q9UK41 AC067940.1-201ENST00000458411 300 ntBASIC0.94□□□□□ -2.26
VPS28Q9UK41 RPL39P28-201ENST00000465655 155 ntBASIC0.94□□□□□ -2.26
VPS28Q9UK41 AC036111.3-201ENST00000526389 112 ntBASIC0.94□□□□□ -2.26
VPS28Q9UK41 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.94□□□□□ -2.26
VPS28Q9UK41 AC044792.1-201ENST00000593294 196 ntBASIC0.94□□□□□ -2.26
VPS28Q9UK41 MIR4791-201ENST00000607666 84 ntBASIC0.94□□□□□ -2.26
VPS28Q9UK41 MIR6516-201ENST00000630554 81 ntBASIC0.94□□□□□ -2.26
VPS28Q9UK41 UBE2WP1-201ENST00000362030 340 ntBASIC0.93□□□□□ -2.26
VPS28Q9UK41 Y_RNA.16-201ENST00000362421 102 ntBASIC0.93□□□□□ -2.26
VPS28Q9UK41 Y_RNA.84-201ENST00000363011 104 ntBASIC0.93□□□□□ -2.26
VPS28Q9UK41 SNORD113.3-201ENST00000364630 78 ntBASIC0.93□□□□□ -2.26
VPS28Q9UK41 RNU6-639P-201ENST00000384074 107 ntBASIC0.93□□□□□ -2.26
VPS28Q9UK41 MIR608-201ENST00000384820 100 ntBASIC0.93□□□□□ -2.26
VPS28Q9UK41 MIR526A2-201ENST00000390198 65 ntBASIC0.93□□□□□ -2.26
VPS28Q9UK41 RNU6-985P-201ENST00000410182 104 ntBASIC0.93□□□□□ -2.26
VPS28Q9UK41 RNU6-994P-201ENST00000410507 111 ntBASIC0.93□□□□□ -2.26
VPS28Q9UK41 AC113618.1-201ENST00000416747 285 ntBASIC0.93□□□□□ -2.26
VPS28Q9UK41 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.93□□□□□ -2.26
VPS28Q9UK41 SERF1AP1-201ENST00000514575 187 ntBASIC0.93□□□□□ -2.26
VPS28Q9UK41 RNU7-25P-201ENST00000516544 62 ntBASIC0.93□□□□□ -2.26
VPS28Q9UK41 MIR4662B-201ENST00000579498 81 ntBASIC0.93□□□□□ -2.26
VPS28Q9UK41 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.93□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms