Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RPL39P28-201ENST00000465655 155 ntBASIC0.78□□□□□ -2.28
LHX3Q9UBR4 RN7SKP164-201ENST00000516138 266 ntBASIC0.78□□□□□ -2.28
LHX3Q9UBR4 RNY3P15-201ENST00000516297 97 ntBASIC0.78□□□□□ -2.28
LHX3Q9UBR4 RNU6-1007P-201ENST00000516586 107 ntBASIC0.78□□□□□ -2.28
LHX3Q9UBR4 Pinc.1-201ENST00000616452 154 ntBASIC0.78□□□□□ -2.28
LHX3Q9UBR4 AC008133.2-201ENST00000624540 351 ntBASIC0.78□□□□□ -2.28
LHX3Q9UBR4 AC134503.1-201ENST00000633048 54 ntBASIC0.78□□□□□ -2.28
LHX3Q9UBR4 MIR4251-201ENST00000635819 61 ntBASIC0.78□□□□□ -2.28
LHX3Q9UBR4 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.77□□□□□ -2.29
LHX3Q9UBR4 RNU6-1205P-201ENST00000363625 106 ntBASIC0.77□□□□□ -2.29
LHX3Q9UBR4 MIR608-201ENST00000384820 100 ntBASIC0.77□□□□□ -2.29
LHX3Q9UBR4 MIR215-201ENST00000384858 110 ntBASIC0.77□□□□□ -2.29
LHX3Q9UBR4 MIR613-201ENST00000385248 95 ntBASIC0.77□□□□□ -2.29
LHX3Q9UBR4 U8.17-201ENST00000391292 132 ntBASIC0.77□□□□□ -2.29
LHX3Q9UBR4 AL603910.2-201ENST00000407268 136 ntBASIC0.77□□□□□ -2.29
LHX3Q9UBR4 MIR548P-201ENST00000408336 84 ntBASIC0.77□□□□□ -2.29
LHX3Q9UBR4 RNU6-383P-201ENST00000410864 94 ntBASIC0.77□□□□□ -2.29
LHX3Q9UBR4 RNU2-64P-201ENST00000411315 191 ntBASIC0.77□□□□□ -2.29
LHX3Q9UBR4 ELOCP20-201ENST00000422460 345 ntBASIC0.77□□□□□ -2.29
LHX3Q9UBR4 SNORD11-201ENST00000459124 84 ntBASIC0.77□□□□□ -2.29
LHX3Q9UBR4 RNA5SP255-201ENST00000516370 107 ntBASIC0.77□□□□□ -2.29
LHX3Q9UBR4 RNU6-197P-201ENST00000516680 100 ntBASIC0.77□□□□□ -2.29
LHX3Q9UBR4 RNU11-2P-201ENST00000516898 142 ntBASIC0.77□□□□□ -2.29
LHX3Q9UBR4 Y_RNA.711-201ENST00000516993 102 ntBASIC0.77□□□□□ -2.29
LHX3Q9UBR4 RNU6-1223P-201ENST00000517124 104 ntBASIC0.77□□□□□ -2.29
LHX3Q9UBR4 RNU7-181P-201ENST00000517234 74 ntBASIC0.77□□□□□ -2.29
LHX3Q9UBR4 CYP3A137P-201ENST00000562436 69 ntBASIC0.77□□□□□ -2.29
LHX3Q9UBR4 MIR151B-201ENST00000584249 96 ntBASIC0.77□□□□□ -2.29
LHX3Q9UBR4 AL512605.2-201ENST00000592972 256 ntBASIC0.77□□□□□ -2.29
LHX3Q9UBR4 MIR6788-201ENST00000618842 66 ntBASIC0.77□□□□□ -2.29
LHX3Q9UBR4 AC015726.2-201ENST00000620112 122 ntBASIC0.77□□□□□ -2.29
LHX3Q9UBR4 Y_RNA.210-201ENST00000364161 110 ntBASIC0.76□□□□□ -2.29
LHX3Q9UBR4 Y_RNA.214-201ENST00000364201 112 ntBASIC0.76□□□□□ -2.29
LHX3Q9UBR4 Y_RNA.242-201ENST00000364473 110 ntBASIC0.76□□□□□ -2.29
LHX3Q9UBR4 RNU6-806P-201ENST00000365147 105 ntBASIC0.76□□□□□ -2.29
LHX3Q9UBR4 RNU6-290P-201ENST00000365212 101 ntBASIC0.76□□□□□ -2.29
LHX3Q9UBR4 RNU6-1067P-201ENST00000384752 107 ntBASIC0.76□□□□□ -2.29
LHX3Q9UBR4 Y_RNA.581-201ENST00000391017 97 ntBASIC0.76□□□□□ -2.29
LHX3Q9UBR4 MIR548J-201ENST00000408833 112 ntBASIC0.76□□□□□ -2.29
LHX3Q9UBR4 RPL21P38-201ENST00000418090 167 ntBASIC0.76□□□□□ -2.29
LHX3Q9UBR4 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.76□□□□□ -2.29
LHX3Q9UBR4 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.76□□□□□ -2.29
LHX3Q9UBR4 AC131281.1-201ENST00000522984 164 ntBASIC0.76□□□□□ -2.29
LHX3Q9UBR4 AC109810.1-201ENST00000534066 224 ntBASIC0.76□□□□□ -2.29
LHX3Q9UBR4 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.76□□□□□ -2.29
LHX3Q9UBR4 AC131055.1-201ENST00000584626 316 ntBASIC0.76□□□□□ -2.29
LHX3Q9UBR4 Y_RNA.19-201ENST00000362462 99 ntBASIC0.75□□□□□ -2.29
LHX3Q9UBR4 Y_RNA.26-201ENST00000362539 101 ntBASIC0.75□□□□□ -2.29
LHX3Q9UBR4 snoU2_19.2-201ENST00000363024 80 ntBASIC0.75□□□□□ -2.29
LHX3Q9UBR4 RNU6-770P-201ENST00000363929 105 ntBASIC0.75□□□□□ -2.29
LHX3Q9UBR4 Y_RNA.541-201ENST00000384640 113 ntBASIC0.75□□□□□ -2.29
LHX3Q9UBR4 Y_RNA.637-201ENST00000459424 114 ntBASIC0.75□□□□□ -2.29
LHX3Q9UBR4 RNU6-830P-201ENST00000516353 107 ntBASIC0.75□□□□□ -2.29
LHX3Q9UBR4 MIR3171-201ENST00000584270 74 ntBASIC0.75□□□□□ -2.29
LHX3Q9UBR4 AC012433.1-201ENST00000588916 398 ntBASIC0.75□□□□□ -2.29
LHX3Q9UBR4 AC013244.2-201ENST00000603396 103 ntBASIC0.75□□□□□ -2.29
LHX3Q9UBR4 RMST_2.1-201ENST00000617263 136 ntBASIC0.75□□□□□ -2.29
LHX3Q9UBR4 Y_RNA.158-201ENST00000363651 101 ntBASIC0.74□□□□□ -2.29
LHX3Q9UBR4 RNU6-654P-201ENST00000364373 107 ntBASIC0.74□□□□□ -2.29
LHX3Q9UBR4 Y_RNA.380-201ENST00000365663 111 ntBASIC0.74□□□□□ -2.29
LHX3Q9UBR4 Y_RNA.455-201ENST00000384230 98 ntBASIC0.74□□□□□ -2.29
LHX3Q9UBR4 RNU6-662P-201ENST00000384253 104 ntBASIC0.74□□□□□ -2.29
LHX3Q9UBR4 MIR489-201ENST00000384923 84 ntBASIC0.74□□□□□ -2.29
LHX3Q9UBR4 MIR1302-7-201ENST00000408841 72 ntBASIC0.74□□□□□ -2.29
LHX3Q9UBR4 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.74□□□□□ -2.29
LHX3Q9UBR4 PSMC1P5-201ENST00000512850 177 ntBASIC0.74□□□□□ -2.29
LHX3Q9UBR4 RNU2-31P-201ENST00000516954 155 ntBASIC0.74□□□□□ -2.29
LHX3Q9UBR4 AC113195.1-201ENST00000579952 141 ntBASIC0.74□□□□□ -2.29
LHX3Q9UBR4 AC006441.5-201ENST00000612680 209 ntBASIC0.74□□□□□ -2.29
LHX3Q9UBR4 AC013791.1-201ENST00000616619 62 ntBASIC0.74□□□□□ -2.29
LHX3Q9UBR4 MIR6866-201ENST00000638146 69 ntBASIC0.74□□□□□ -2.29
LHX3Q9UBR4 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.73□□□□□ -2.29
LHX3Q9UBR4 SNORA25.1-201ENST00000362326 128 ntBASIC0.73□□□□□ -2.29
LHX3Q9UBR4 Y_RNA.64-201ENST00000362845 102 ntBASIC0.73□□□□□ -2.29
LHX3Q9UBR4 RNY1-201ENST00000364228 113 ntBASIC0.73□□□□□ -2.29
LHX3Q9UBR4 Y_RNA.370-201ENST00000365589 108 ntBASIC0.73□□□□□ -2.29
LHX3Q9UBR4 RNU6-144P-201ENST00000383951 107 ntBASIC0.73□□□□□ -2.29
LHX3Q9UBR4 RNU6-514P-201ENST00000384208 107 ntBASIC0.73□□□□□ -2.29
LHX3Q9UBR4 MIR605-201ENST00000385078 83 ntBASIC0.73□□□□□ -2.29
LHX3Q9UBR4 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.73□□□□□ -2.29
LHX3Q9UBR4 SNORA53-201ENST00000391141 249 ntBASIC0.73□□□□□ -2.29
LHX3Q9UBR4 RNA5SP95-201ENST00000410319 137 ntBASIC0.73□□□□□ -2.29
LHX3Q9UBR4 BTF3P11-201ENST00000426582 477 ntBASIC0.73□□□□□ -2.29
LHX3Q9UBR4 AL392103.1-201ENST00000447000 198 ntBASIC0.73□□□□□ -2.29
LHX3Q9UBR4 AC020661.2-201ENST00000560114 134 ntBASIC0.73□□□□□ -2.29
LHX3Q9UBR4 AL049861.1-201ENST00000603130 150 ntBASIC0.73□□□□□ -2.29
LHX3Q9UBR4 RNU6-94P-201ENST00000607728 107 ntBASIC0.73□□□□□ -2.29
LHX3Q9UBR4 AC106800.4-201ENST00000614905 153 ntBASIC0.73□□□□□ -2.29
LHX3Q9UBR4 AC023934.1-201ENST00000574529 2389 ntBASIC0.72□□□□□ -2.29
LHX3Q9UBR4 RNU6-1272P-201ENST00000362776 107 ntBASIC0.72□□□□□ -2.29
LHX3Q9UBR4 Y_RNA.293-201ENST00000364908 93 ntBASIC0.72□□□□□ -2.29
LHX3Q9UBR4 RNU6-1335P-201ENST00000365426 107 ntBASIC0.72□□□□□ -2.29
LHX3Q9UBR4 Y_RNA.466-201ENST00000384294 113 ntBASIC0.72□□□□□ -2.29
LHX3Q9UBR4 SNORD89-201ENST00000390981 114 ntBASIC0.72□□□□□ -2.29
LHX3Q9UBR4 SNORD111-201ENST00000408139 94 ntBASIC0.72□□□□□ -2.29
LHX3Q9UBR4 AC023449.1-201ENST00000454464 154 ntBASIC0.72□□□□□ -2.29
LHX3Q9UBR4 U7.7-201ENST00000459276 60 ntBASIC0.72□□□□□ -2.29
LHX3Q9UBR4 AC091959.1-201ENST00000495857 238 ntBASIC0.72□□□□□ -2.29
LHX3Q9UBR4 RNU7-149P-201ENST00000516739 59 ntBASIC0.72□□□□□ -2.29
LHX3Q9UBR4 AC036111.3-201ENST00000526389 112 ntBASIC0.72□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 442.5 ms