Protein–RNA interactions for Protein: Q9NY35

CLDND1, Claudin domain-containing protein 1, humanhuman

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1Q9NY35 SNORA4.2-201ENST00000365313 147 ntBASIC2.38□□□□□ -2.03
CLDND1Q9NY35 Y_RNA.525-201ENST00000384570 113 ntBASIC2.38□□□□□ -2.03
CLDND1Q9NY35 RNU6-950P-201ENST00000384651 107 ntBASIC2.38□□□□□ -2.03
CLDND1Q9NY35 Y_RNA.563-201ENST00000384707 108 ntBASIC2.38□□□□□ -2.03
CLDND1Q9NY35 AL023284.1-201ENST00000403956 276 ntBASIC2.38□□□□□ -2.03
CLDND1Q9NY35 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.38□□□□□ -2.03
CLDND1Q9NY35 AL158147.1-201ENST00000443970 75 ntBASIC2.38□□□□□ -2.03
CLDND1Q9NY35 HMGN2P32-201ENST00000444648 269 ntBASIC2.38□□□□□ -2.03
CLDND1Q9NY35 RNA5SP236-201ENST00000516169 116 ntBASIC2.38□□□□□ -2.03
CLDND1Q9NY35 RNU7-25P-201ENST00000516544 62 ntBASIC2.38□□□□□ -2.03
CLDND1Q9NY35 RNU6-826P-201ENST00000516827 104 ntBASIC2.38□□□□□ -2.03
CLDND1Q9NY35 Y_RNA.712-201ENST00000517011 92 ntBASIC2.38□□□□□ -2.03
CLDND1Q9NY35 RNU6-1116P-201ENST00000517269 99 ntBASIC2.38□□□□□ -2.03
CLDND1Q9NY35 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.38□□□□□ -2.03
CLDND1Q9NY35 AC007336.1-201ENST00000576365 3828 ntBASIC2.38□□□□□ -2.03
CLDND1Q9NY35 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC2.38□□□□□ -2.03
CLDND1Q9NY35 SNORA3A-201ENST00000364113 130 ntBASIC2.37□□□□□ -2.03
CLDND1Q9NY35 RNU1-52P-201ENST00000384190 164 ntBASIC2.37□□□□□ -2.03
CLDND1Q9NY35 MTATP6P29-201ENST00000415057 132 ntBASIC2.37□□□□□ -2.03
CLDND1Q9NY35 CYCTP-201ENST00000504253 315 ntBASIC2.37□□□□□ -2.03
CLDND1Q9NY35 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.37□□□□□ -2.03
CLDND1Q9NY35 AC114811.1-201ENST00000507207 168 ntBASIC2.37□□□□□ -2.03
CLDND1Q9NY35 AC134878.1-201ENST00000619901 243 ntBASIC2.37□□□□□ -2.03
CLDND1Q9NY35 MIR376A2-201ENST00000636782 80 ntBASIC2.37□□□□□ -2.03
CLDND1Q9NY35 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.37□□□□□ -2.03
CLDND1Q9NY35 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.36□□□□□ -2.03
CLDND1Q9NY35 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.36□□□□□ -2.03
CLDND1Q9NY35 RNU1-17P-201ENST00000363022 152 ntBASIC2.36□□□□□ -2.03
CLDND1Q9NY35 Y_RNA.547-201ENST00000384654 119 ntBASIC2.36□□□□□ -2.03
CLDND1Q9NY35 MIR520A-201ENST00000384862 85 ntBASIC2.36□□□□□ -2.03
CLDND1Q9NY35 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
CLDND1Q9NY35 U8.13-201ENST00000390842 128 ntBASIC2.36□□□□□ -2.03
CLDND1Q9NY35 SNORA26.9-201ENST00000391322 122 ntBASIC2.36□□□□□ -2.03
CLDND1Q9NY35 AL034345.1-201ENST00000407768 123 ntBASIC2.36□□□□□ -2.03
CLDND1Q9NY35 MTATP6P21-201ENST00000440681 189 ntBASIC2.36□□□□□ -2.03
CLDND1Q9NY35 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.36□□□□□ -2.03
CLDND1Q9NY35 Y_RNA.651-201ENST00000459380 103 ntBASIC2.36□□□□□ -2.03
CLDND1Q9NY35 SNORA31.25-201ENST00000517242 134 ntBASIC2.36□□□□□ -2.03
CLDND1Q9NY35 RNA5SP437-201ENST00000517249 129 ntBASIC2.36□□□□□ -2.03
CLDND1Q9NY35 AC004486.1-201ENST00000546846 233 ntBASIC2.36□□□□□ -2.03
CLDND1Q9NY35 MIR3670-2-201ENST00000582974 65 ntBASIC2.36□□□□□ -2.03
CLDND1Q9NY35 MIR5197-201ENST00000583721 112 ntBASIC2.36□□□□□ -2.03
CLDND1Q9NY35 MIR3670-1-201ENST00000584160 65 ntBASIC2.36□□□□□ -2.03
CLDND1Q9NY35 MIR3670-3-201ENST00000584855 65 ntBASIC2.36□□□□□ -2.03
CLDND1Q9NY35 AC067747.1-201ENST00000608026 250 ntBASIC2.36□□□□□ -2.03
CLDND1Q9NY35 MIR3670-4-201ENST00000612260 65 ntBASIC2.36□□□□□ -2.03
CLDND1Q9NY35 AC027279.3-201ENST00000625055 122 ntBASIC2.36□□□□□ -2.03
CLDND1Q9NY35 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.36□□□□□ -2.03
CLDND1Q9NY35 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.35□□□□□ -2.03
CLDND1Q9NY35 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.35□□□□□ -2.03
CLDND1Q9NY35 RNU6-112P-201ENST00000363599 104 ntBASIC2.35□□□□□ -2.03
CLDND1Q9NY35 Y_RNA.353-201ENST00000365440 108 ntBASIC2.35□□□□□ -2.03
CLDND1Q9NY35 Y_RNA.410-201ENST00000383992 113 ntBASIC2.35□□□□□ -2.03
CLDND1Q9NY35 RNU6-163P-201ENST00000384396 106 ntBASIC2.35□□□□□ -2.03
CLDND1Q9NY35 RNU6-296P-201ENST00000384608 107 ntBASIC2.35□□□□□ -2.03
CLDND1Q9NY35 CALM2P4-201ENST00000430810 426 ntBASIC2.35□□□□□ -2.03
CLDND1Q9NY35 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.35□□□□□ -2.03
CLDND1Q9NY35 RNU6-772P-201ENST00000516042 105 ntBASIC2.35□□□□□ -2.03
CLDND1Q9NY35 RNU6-1149P-201ENST00000516810 97 ntBASIC2.35□□□□□ -2.03
CLDND1Q9NY35 SCARNA15-202ENST00000516881 127 ntBASIC2.35□□□□□ -2.03
CLDND1Q9NY35 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.35□□□□□ -2.03
CLDND1Q9NY35 AL022345.2-201ENST00000606307 135 ntBASIC2.35□□□□□ -2.03
CLDND1Q9NY35 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.35□□□□□ -2.03
CLDND1Q9NY35 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.35□□□□□ -2.03
CLDND1Q9NY35 AC092881.1-201ENST00000638218 2733 ntBASIC2.34□□□□□ -2.03
CLDND1Q9NY35 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
CLDND1Q9NY35 Z82195.2-201ENST00000612348 18351 ntBASIC2.34□□□□□ -2.03
CLDND1Q9NY35 Y_RNA.118-201ENST00000363300 101 ntBASIC2.34□□□□□ -2.03
CLDND1Q9NY35 SNORD115-28-201ENST00000363931 81 ntBASIC2.34□□□□□ -2.03
CLDND1Q9NY35 RNU6-424P-201ENST00000384367 105 ntBASIC2.34□□□□□ -2.03
CLDND1Q9NY35 RNU6-1031P-201ENST00000384773 107 ntBASIC2.34□□□□□ -2.03
CLDND1Q9NY35 U8.16-201ENST00000391279 133 ntBASIC2.34□□□□□ -2.03
CLDND1Q9NY35 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.34□□□□□ -2.03
CLDND1Q9NY35 RPL23AP63-201ENST00000498752 471 ntBASIC2.34□□□□□ -2.03
CLDND1Q9NY35 RNU5E-3P-201ENST00000515913 68 ntBASIC2.34□□□□□ -2.03
CLDND1Q9NY35 SCARNA16.3-201ENST00000516595 184 ntBASIC2.34□□□□□ -2.03
CLDND1Q9NY35 MIR4498-201ENST00000577599 66 ntBASIC2.34□□□□□ -2.03
CLDND1Q9NY35 RNU6-834P-201ENST00000362367 110 ntBASIC2.33□□□□□ -2.04
CLDND1Q9NY35 Y_RNA.37-201ENST00000362606 108 ntBASIC2.33□□□□□ -2.04
CLDND1Q9NY35 SNORA25.6-201ENST00000364121 118 ntBASIC2.33□□□□□ -2.04
CLDND1Q9NY35 RNU6-647P-201ENST00000364243 107 ntBASIC2.33□□□□□ -2.04
CLDND1Q9NY35 DEFA7P-201ENST00000382676 285 ntBASIC2.33□□□□□ -2.04
CLDND1Q9NY35 RNU2-7P-201ENST00000410794 178 ntBASIC2.33□□□□□ -2.04
CLDND1Q9NY35 RNA5SP450-201ENST00000411206 102 ntBASIC2.33□□□□□ -2.04
CLDND1Q9NY35 RNA5SP168-201ENST00000516642 112 ntBASIC2.33□□□□□ -2.04
CLDND1Q9NY35 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.33□□□□□ -2.04
CLDND1Q9NY35 MIR4781-201ENST00000585250 76 ntBASIC2.33□□□□□ -2.04
CLDND1Q9NY35 MIR6132-201ENST00000622083 109 ntBASIC2.33□□□□□ -2.04
CLDND1Q9NY35 MIR3914-2-201ENST00000637339 95 ntBASIC2.33□□□□□ -2.04
CLDND1Q9NY35 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
CLDND1Q9NY35 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
CLDND1Q9NY35 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
CLDND1Q9NY35 RNU1-51P-201ENST00000365345 176 ntBASIC2.32□□□□□ -2.04
CLDND1Q9NY35 SNORD20-201ENST00000384550 80 ntBASIC2.32□□□□□ -2.04
CLDND1Q9NY35 Y_RNA.617-201ENST00000410920 90 ntBASIC2.32□□□□□ -2.04
CLDND1Q9NY35 AL445646.1-201ENST00000431784 216 ntBASIC2.32□□□□□ -2.04
CLDND1Q9NY35 RNU7-193P-201ENST00000516723 65 ntBASIC2.32□□□□□ -2.04
CLDND1Q9NY35 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.32□□□□□ -2.04
CLDND1Q9NY35 MIR6845-201ENST00000613182 61 ntBASIC2.32□□□□□ -2.04
CLDND1Q9NY35 AC015726.2-201ENST00000620112 122 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms