Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.95□□□□□ -1.94
CCDC87Q9NVE4 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.95□□□□□ -1.94
CCDC87Q9NVE4 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.94□□□□□ -1.94
CCDC87Q9NVE4 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC87Q9NVE4 Y_RNA.164-201ENST00000363709 102 ntBASIC2.94□□□□□ -1.94
CCDC87Q9NVE4 RNU6-1189P-201ENST00000383958 107 ntBASIC2.94□□□□□ -1.94
CCDC87Q9NVE4 MIR518A2-201ENST00000384966 87 ntBASIC2.94□□□□□ -1.94
CCDC87Q9NVE4 SNORA40.5-201ENST00000391061 128 ntBASIC2.94□□□□□ -1.94
CCDC87Q9NVE4 AL034345.1-201ENST00000407768 123 ntBASIC2.94□□□□□ -1.94
CCDC87Q9NVE4 MIR1283-2-201ENST00000408621 87 ntBASIC2.94□□□□□ -1.94
CCDC87Q9NVE4 AC087499.4-201ENST00000448505 178 ntBASIC2.94□□□□□ -1.94
CCDC87Q9NVE4 SCARNA15-202ENST00000516881 127 ntBASIC2.94□□□□□ -1.94
CCDC87Q9NVE4 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC87Q9NVE4 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC87Q9NVE4 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC87Q9NVE4 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC87Q9NVE4 SNORA63D-201ENST00000364359 132 ntBASIC2.93□□□□□ -1.94
CCDC87Q9NVE4 RNU6-44P-201ENST00000384045 107 ntBASIC2.93□□□□□ -1.94
CCDC87Q9NVE4 SNORD38C-201ENST00000384381 69 ntBASIC2.93□□□□□ -1.94
CCDC87Q9NVE4 Y_RNA.547-201ENST00000384654 119 ntBASIC2.93□□□□□ -1.94
CCDC87Q9NVE4 SNORA64-201ENST00000384674 134 ntBASIC2.93□□□□□ -1.94
CCDC87Q9NVE4 HMGN2P39-201ENST00000398005 273 ntBASIC2.93□□□□□ -1.94
CCDC87Q9NVE4 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.93□□□□□ -1.94
CCDC87Q9NVE4 RN7SKP19-201ENST00000516016 252 ntBASIC2.93□□□□□ -1.94
CCDC87Q9NVE4 AL670379.3-201ENST00000605040 251 ntBASIC2.93□□□□□ -1.94
CCDC87Q9NVE4 RNU6-163P-201ENST00000384396 106 ntBASIC2.92□□□□□ -1.94
CCDC87Q9NVE4 MIR597-201ENST00000384968 97 ntBASIC2.92□□□□□ -1.94
CCDC87Q9NVE4 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
CCDC87Q9NVE4 SNORA48.1-201ENST00000390879 135 ntBASIC2.92□□□□□ -1.94
CCDC87Q9NVE4 RNU7-25P-201ENST00000516544 62 ntBASIC2.92□□□□□ -1.94
CCDC87Q9NVE4 AC004486.1-201ENST00000546846 233 ntBASIC2.92□□□□□ -1.94
CCDC87Q9NVE4 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.92□□□□□ -1.94
CCDC87Q9NVE4 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC87Q9NVE4 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.91□□□□□ -1.94
CCDC87Q9NVE4 Y_RNA.37-201ENST00000362606 108 ntBASIC2.91□□□□□ -1.94
CCDC87Q9NVE4 RNU6-508P-201ENST00000363231 103 ntBASIC2.91□□□□□ -1.94
CCDC87Q9NVE4 MIRLET7F2-201ENST00000385277 83 ntBASIC2.91□□□□□ -1.94
CCDC87Q9NVE4 AL445646.1-201ENST00000431784 216 ntBASIC2.91□□□□□ -1.94
CCDC87Q9NVE4 SNORA31.10-201ENST00000516482 106 ntBASIC2.91□□□□□ -1.94
CCDC87Q9NVE4 MTND5P34-201ENST00000568888 325 ntBASIC2.91□□□□□ -1.94
CCDC87Q9NVE4 Y_RNA.140-201ENST00000363474 103 ntBASIC2.9□□□□□ -1.95
CCDC87Q9NVE4 RNU1-109P-201ENST00000383960 147 ntBASIC2.9□□□□□ -1.95
CCDC87Q9NVE4 MIR520A-201ENST00000384862 85 ntBASIC2.9□□□□□ -1.95
CCDC87Q9NVE4 RNA5SP270-201ENST00000411361 118 ntBASIC2.9□□□□□ -1.95
CCDC87Q9NVE4 AC114811.1-201ENST00000507207 168 ntBASIC2.9□□□□□ -1.95
CCDC87Q9NVE4 MIRLET7C-201ENST00000362160 84 ntBASIC2.89□□□□□ -1.95
CCDC87Q9NVE4 RNU1-51P-201ENST00000365345 176 ntBASIC2.89□□□□□ -1.95
CCDC87Q9NVE4 SNORA2.2-201ENST00000365473 135 ntBASIC2.89□□□□□ -1.95
CCDC87Q9NVE4 RNU6-429P-201ENST00000384582 108 ntBASIC2.89□□□□□ -1.95
CCDC87Q9NVE4 MIR221-201ENST00000385135 110 ntBASIC2.89□□□□□ -1.95
CCDC87Q9NVE4 RPS26P48-201ENST00000491713 339 ntBASIC2.89□□□□□ -1.95
CCDC87Q9NVE4 RNU6-830P-201ENST00000516353 107 ntBASIC2.89□□□□□ -1.95
CCDC87Q9NVE4 MIR3670-2-201ENST00000582974 65 ntBASIC2.89□□□□□ -1.95
CCDC87Q9NVE4 MIR3670-1-201ENST00000584160 65 ntBASIC2.89□□□□□ -1.95
CCDC87Q9NVE4 MIR3670-3-201ENST00000584855 65 ntBASIC2.89□□□□□ -1.95
CCDC87Q9NVE4 AP000942.3-201ENST00000603702 160 ntBASIC2.89□□□□□ -1.95
CCDC87Q9NVE4 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.89□□□□□ -1.95
CCDC87Q9NVE4 MIR3670-4-201ENST00000612260 65 ntBASIC2.89□□□□□ -1.95
CCDC87Q9NVE4 AC025166.1-201ENST00000612411 163 ntBASIC2.89□□□□□ -1.95
CCDC87Q9NVE4 U1.36-201ENST00000620684 176 ntBASIC2.89□□□□□ -1.95
CCDC87Q9NVE4 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.89□□□□□ -1.95
CCDC87Q9NVE4 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC87Q9NVE4 RNU6-833P-201ENST00000363486 107 ntBASIC2.88□□□□□ -1.95
CCDC87Q9NVE4 SNORA67.3-201ENST00000384366 140 ntBASIC2.88□□□□□ -1.95
CCDC87Q9NVE4 MIR548A3-201ENST00000385297 97 ntBASIC2.88□□□□□ -1.95
CCDC87Q9NVE4 RNA5SP136-201ENST00000410906 107 ntBASIC2.88□□□□□ -1.95
CCDC87Q9NVE4 Y_RNA.630-201ENST00000411370 108 ntBASIC2.88□□□□□ -1.95
CCDC87Q9NVE4 RNU6-781P-201ENST00000516377 101 ntBASIC2.88□□□□□ -1.95
CCDC87Q9NVE4 RNU6-295P-201ENST00000516901 104 ntBASIC2.88□□□□□ -1.95
CCDC87Q9NVE4 RNU7-70P-201ENST00000516941 66 ntBASIC2.88□□□□□ -1.95
CCDC87Q9NVE4 Y_RNA.709-201ENST00000516952 92 ntBASIC2.88□□□□□ -1.95
CCDC87Q9NVE4 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC87Q9NVE4 SUB1P4-201ENST00000566062 339 ntBASIC2.88□□□□□ -1.95
CCDC87Q9NVE4 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.88□□□□□ -1.95
CCDC87Q9NVE4 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC2.88□□□□□ -1.95
CCDC87Q9NVE4 MIR6129-201ENST00000616087 109 ntBASIC2.88□□□□□ -1.95
CCDC87Q9NVE4 MIR219B-201ENST00000637023 88 ntBASIC2.88□□□□□ -1.95
CCDC87Q9NVE4 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC87Q9NVE4 MIR21-201ENST00000362134 72 ntBASIC2.87□□□□□ -1.95
CCDC87Q9NVE4 SNORD33.1-201ENST00000516213 88 ntBASIC2.87□□□□□ -1.95
CCDC87Q9NVE4 RNA5SP481-201ENST00000516814 122 ntBASIC2.87□□□□□ -1.95
CCDC87Q9NVE4 AC015726.2-201ENST00000620112 122 ntBASIC2.87□□□□□ -1.95
CCDC87Q9NVE4 AL121890.5-201ENST00000620848 304 ntBASIC2.87□□□□□ -1.95
CCDC87Q9NVE4 ZNF720P1-201ENST00000562403 1939 ntBASIC2.87□□□□□ -1.95
CCDC87Q9NVE4 VTRNA1-1-201ENST00000363120 99 ntBASIC2.86□□□□□ -1.95
CCDC87Q9NVE4 RNU6-424P-201ENST00000384367 105 ntBASIC2.86□□□□□ -1.95
CCDC87Q9NVE4 AL627390.1-201ENST00000396055 340 ntBASIC2.86□□□□□ -1.95
CCDC87Q9NVE4 AL023284.1-201ENST00000403956 276 ntBASIC2.86□□□□□ -1.95
CCDC87Q9NVE4 RNU2-7P-201ENST00000410794 178 ntBASIC2.86□□□□□ -1.95
CCDC87Q9NVE4 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC87Q9NVE4 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC87Q9NVE4 RNU7-80P-201ENST00000459562 61 ntBASIC2.86□□□□□ -1.95
CCDC87Q9NVE4 RNVU1-2-201ENST00000516326 135 ntBASIC2.86□□□□□ -1.95
CCDC87Q9NVE4 RNU6-589P-201ENST00000516485 107 ntBASIC2.86□□□□□ -1.95
CCDC87Q9NVE4 AP003484.1-201ENST00000530974 250 ntBASIC2.86□□□□□ -1.95
CCDC87Q9NVE4 AC108081.1-201ENST00000604358 221 ntBASIC2.86□□□□□ -1.95
CCDC87Q9NVE4 MIR6766-201ENST00000622641 72 ntBASIC2.86□□□□□ -1.95
CCDC87Q9NVE4 MIR376A2-201ENST00000636782 80 ntBASIC2.86□□□□□ -1.95
CCDC87Q9NVE4 RNU6-1031P-201ENST00000384773 107 ntBASIC2.85□□□□□ -1.95
CCDC87Q9NVE4 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms