Protein–RNA interactions for Protein: Q9NUD5

ZCCHC3, Zinc finger CCHC domain-containing protein 3, humanhuman

Known RBP Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZCCHC3Q9NUD5 MTCO1P5-201ENST00000433573 344 ntBASIC0.67□□□□□ -2.3
ZCCHC3Q9NUD5 COX6CP6-201ENST00000490840 228 ntBASIC0.67□□□□□ -2.3
ZCCHC3Q9NUD5 RNU2-13P-201ENST00000515909 113 ntBASIC0.67□□□□□ -2.3
ZCCHC3Q9NUD5 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC0.67□□□□□ -2.3
ZCCHC3Q9NUD5 MIR548AO-201ENST00000579992 96 ntBASIC0.67□□□□□ -2.3
ZCCHC3Q9NUD5 RNU6-1205P-201ENST00000363625 106 ntBASIC0.66□□□□□ -2.3
ZCCHC3Q9NUD5 Y_RNA.168-201ENST00000363740 102 ntBASIC0.66□□□□□ -2.3
ZCCHC3Q9NUD5 Y_RNA.509-201ENST00000384506 99 ntBASIC0.66□□□□□ -2.3
ZCCHC3Q9NUD5 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
ZCCHC3Q9NUD5 Y_RNA.581-201ENST00000391017 97 ntBASIC0.66□□□□□ -2.3
ZCCHC3Q9NUD5 MIR1827-201ENST00000408549 66 ntBASIC0.66□□□□□ -2.3
ZCCHC3Q9NUD5 MIR1252-201ENST00000408861 65 ntBASIC0.66□□□□□ -2.3
ZCCHC3Q9NUD5 RNU6-847P-201ENST00000411115 108 ntBASIC0.66□□□□□ -2.3
ZCCHC3Q9NUD5 MTATP6P23-201ENST00000440153 476 ntBASIC0.66□□□□□ -2.3
ZCCHC3Q9NUD5 Y_RNA.637-201ENST00000459424 114 ntBASIC0.66□□□□□ -2.3
ZCCHC3Q9NUD5 AC098869.1-201ENST00000481627 292 ntBASIC0.66□□□□□ -2.3
ZCCHC3Q9NUD5 MRPS35P2-201ENST00000508242 191 ntBASIC0.66□□□□□ -2.3
ZCCHC3Q9NUD5 SCARNA8-201ENST00000515924 131 ntBASIC0.66□□□□□ -2.3
ZCCHC3Q9NUD5 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.66□□□□□ -2.3
ZCCHC3Q9NUD5 AC012433.1-201ENST00000588916 398 ntBASIC0.66□□□□□ -2.3
ZCCHC3Q9NUD5 MTND1P7-201ENST00000632801 297 ntBASIC0.66□□□□□ -2.3
ZCCHC3Q9NUD5 Y_RNA.28-201ENST00000362554 111 ntBASIC0.65□□□□□ -2.31
ZCCHC3Q9NUD5 RNU6-450P-201ENST00000364654 107 ntBASIC0.65□□□□□ -2.31
ZCCHC3Q9NUD5 RNU1-93P-201ENST00000364704 169 ntBASIC0.65□□□□□ -2.31
ZCCHC3Q9NUD5 MT-TN-201ENST00000387400 73 ntBASIC0.65□□□□□ -2.31
ZCCHC3Q9NUD5 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.65□□□□□ -2.31
ZCCHC3Q9NUD5 MTND5P15-201ENST00000434246 349 ntBASIC0.65□□□□□ -2.31
ZCCHC3Q9NUD5 AC023449.1-201ENST00000454464 154 ntBASIC0.65□□□□□ -2.31
ZCCHC3Q9NUD5 Y_RNA.721-201ENST00000517207 102 ntBASIC0.65□□□□□ -2.31
ZCCHC3Q9NUD5 MIR3124-201ENST00000582636 67 ntBASIC0.65□□□□□ -2.31
ZCCHC3Q9NUD5 AL021707.8-201ENST00000609428 183 ntBASIC0.65□□□□□ -2.31
ZCCHC3Q9NUD5 MIR377-201ENST00000362145 69 ntBASIC0.64□□□□□ -2.31
ZCCHC3Q9NUD5 RNU6-101P-201ENST00000410323 104 ntBASIC0.64□□□□□ -2.31
ZCCHC3Q9NUD5 Y_RNA.638-201ENST00000459374 113 ntBASIC0.64□□□□□ -2.31
ZCCHC3Q9NUD5 AC013791.1-201ENST00000616619 62 ntBASIC0.64□□□□□ -2.31
ZCCHC3Q9NUD5 AC243994.1-201ENST00000618627 109 ntBASIC0.64□□□□□ -2.31
ZCCHC3Q9NUD5 MIR6835-201ENST00000621552 64 ntBASIC0.64□□□□□ -2.31
ZCCHC3Q9NUD5 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.63□□□□□ -2.31
ZCCHC3Q9NUD5 Y_RNA.105-201ENST00000363182 111 ntBASIC0.63□□□□□ -2.31
ZCCHC3Q9NUD5 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
ZCCHC3Q9NUD5 Y_RNA.547-201ENST00000384654 119 ntBASIC0.63□□□□□ -2.31
ZCCHC3Q9NUD5 RNA5SP496-201ENST00000391240 109 ntBASIC0.63□□□□□ -2.31
ZCCHC3Q9NUD5 RNU6-121P-201ENST00000410525 99 ntBASIC0.63□□□□□ -2.31
ZCCHC3Q9NUD5 RNU7-25P-201ENST00000516544 62 ntBASIC0.63□□□□□ -2.31
ZCCHC3Q9NUD5 RNU7-149P-201ENST00000516739 59 ntBASIC0.63□□□□□ -2.31
ZCCHC3Q9NUD5 uc_338.4-201ENST00000616635 176 ntBASIC0.63□□□□□ -2.31
ZCCHC3Q9NUD5 MIR1-1-201ENST00000362147 71 ntBASIC0.62□□□□□ -2.31
ZCCHC3Q9NUD5 RNU6-1272P-201ENST00000362776 107 ntBASIC0.62□□□□□ -2.31
ZCCHC3Q9NUD5 RNU6-580P-201ENST00000365159 107 ntBASIC0.62□□□□□ -2.31
ZCCHC3Q9NUD5 RNU6-290P-201ENST00000365212 101 ntBASIC0.62□□□□□ -2.31
ZCCHC3Q9NUD5 RNU6-1138P-201ENST00000365359 106 ntBASIC0.62□□□□□ -2.31
ZCCHC3Q9NUD5 Y_RNA.376-201ENST00000365638 108 ntBASIC0.62□□□□□ -2.31
ZCCHC3Q9NUD5 Y_RNA.389-201ENST00000383924 113 ntBASIC0.62□□□□□ -2.31
ZCCHC3Q9NUD5 RNU6-474P-201ENST00000384243 107 ntBASIC0.62□□□□□ -2.31
ZCCHC3Q9NUD5 SNORD105-201ENST00000386910 85 ntBASIC0.62□□□□□ -2.31
ZCCHC3Q9NUD5 MIR548O-201ENST00000408583 114 ntBASIC0.62□□□□□ -2.31
ZCCHC3Q9NUD5 RNU6-383P-201ENST00000410864 94 ntBASIC0.62□□□□□ -2.31
ZCCHC3Q9NUD5 AC244098.3-201ENST00000424803 96 ntBASIC0.62□□□□□ -2.31
ZCCHC3Q9NUD5 MTND4LP30-201ENST00000454092 297 ntBASIC0.62□□□□□ -2.31
ZCCHC3Q9NUD5 AL117351.2-201ENST00000513571 157 ntBASIC0.62□□□□□ -2.31
ZCCHC3Q9NUD5 DEFB108E-201ENST00000524692 240 ntBASIC0.62□□□□□ -2.31
ZCCHC3Q9NUD5 AL512605.2-201ENST00000592972 256 ntBASIC0.62□□□□□ -2.31
ZCCHC3Q9NUD5 AL590095.2-201ENST00000604136 117 ntBASIC0.62□□□□□ -2.31
ZCCHC3Q9NUD5 AC068700.1-201ENST00000565862 3754 ntBASIC0.61□□□□□ -2.31
ZCCHC3Q9NUD5 Y_RNA.380-201ENST00000365663 111 ntBASIC0.61□□□□□ -2.31
ZCCHC3Q9NUD5 SNORA24-201ENST00000384096 131 ntBASIC0.61□□□□□ -2.31
ZCCHC3Q9NUD5 RNU1-119P-201ENST00000391122 165 ntBASIC0.61□□□□□ -2.31
ZCCHC3Q9NUD5 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.61□□□□□ -2.31
ZCCHC3Q9NUD5 MIR5692C2-201ENST00000577959 77 ntBASIC0.61□□□□□ -2.31
ZCCHC3Q9NUD5 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.61□□□□□ -2.31
ZCCHC3Q9NUD5 Y_RNA.14-201ENST00000362415 103 ntBASIC0.6□□□□□ -2.31
ZCCHC3Q9NUD5 SNORD45.3-201ENST00000363836 72 ntBASIC0.6□□□□□ -2.31
ZCCHC3Q9NUD5 MIR508-201ENST00000384857 115 ntBASIC0.6□□□□□ -2.31
ZCCHC3Q9NUD5 Y_RNA.631-201ENST00000459607 101 ntBASIC0.6□□□□□ -2.31
ZCCHC3Q9NUD5 RNU2-31P-201ENST00000516954 155 ntBASIC0.6□□□□□ -2.31
ZCCHC3Q9NUD5 AP000753.3-201ENST00000604083 169 ntBASIC0.6□□□□□ -2.31
ZCCHC3Q9NUD5 AL160413.1-201ENST00000622780 310 ntBASIC0.6□□□□□ -2.31
ZCCHC3Q9NUD5 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.6□□□□□ -2.31
ZCCHC3Q9NUD5 MTND4P29-201ENST00000503122 1372 ntBASIC0.59□□□□□ -2.31
ZCCHC3Q9NUD5 RNU6-369P-201ENST00000362515 102 ntBASIC0.59□□□□□ -2.31
ZCCHC3Q9NUD5 snoU2_19.2-201ENST00000363024 80 ntBASIC0.59□□□□□ -2.31
ZCCHC3Q9NUD5 RNU6-326P-201ENST00000365480 107 ntBASIC0.59□□□□□ -2.31
ZCCHC3Q9NUD5 RNU6-125P-201ENST00000384505 107 ntBASIC0.59□□□□□ -2.31
ZCCHC3Q9NUD5 Y_RNA.541-201ENST00000384640 113 ntBASIC0.59□□□□□ -2.31
ZCCHC3Q9NUD5 MIR1276-201ENST00000408707 83 ntBASIC0.59□□□□□ -2.31
ZCCHC3Q9NUD5 snoU13.16-201ENST00000459350 104 ntBASIC0.59□□□□□ -2.31
ZCCHC3Q9NUD5 AC107297.1-201ENST00000459991 176 ntBASIC0.59□□□□□ -2.31
ZCCHC3Q9NUD5 SNORA40.15-201ENST00000516884 107 ntBASIC0.59□□□□□ -2.31
ZCCHC3Q9NUD5 RNU6-988P-201ENST00000519081 107 ntBASIC0.59□□□□□ -2.31
ZCCHC3Q9NUD5 AC133485.1-201ENST00000567176 124 ntBASIC0.59□□□□□ -2.31
ZCCHC3Q9NUD5 AC138907.6-201ENST00000568401 126 ntBASIC0.59□□□□□ -2.31
ZCCHC3Q9NUD5 MIR4724-201ENST00000579485 89 ntBASIC0.59□□□□□ -2.31
ZCCHC3Q9NUD5 AP001094.1-201ENST00000579805 193 ntBASIC0.59□□□□□ -2.31
ZCCHC3Q9NUD5 MIR4264-201ENST00000583520 66 ntBASIC0.59□□□□□ -2.31
ZCCHC3Q9NUD5 AL049861.1-201ENST00000603130 150 ntBASIC0.59□□□□□ -2.31
ZCCHC3Q9NUD5 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.59□□□□□ -2.31
ZCCHC3Q9NUD5 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.59□□□□□ -2.31
ZCCHC3Q9NUD5 MIR367-201ENST00000362299 68 ntBASIC0.58□□□□□ -2.32
ZCCHC3Q9NUD5 SNORD115-34-201ENST00000362441 82 ntBASIC0.58□□□□□ -2.32
ZCCHC3Q9NUD5 SNORD115-12-201ENST00000362583 82 ntBASIC0.58□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 242.8 ms