Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 MIR5087-201ENST00000635826 76 ntBASIC0.35□□□□□ -2.35
EXOSC4Q9NPD3 Y_RNA.224-201ENST00000364308 111 ntBASIC0.34□□□□□ -2.36
EXOSC4Q9NPD3 Y_RNA.315-201ENST00000365117 102 ntBASIC0.34□□□□□ -2.36
EXOSC4Q9NPD3 RNY1P14-201ENST00000384426 108 ntBASIC0.34□□□□□ -2.36
EXOSC4Q9NPD3 MIR520H-201ENST00000385126 88 ntBASIC0.34□□□□□ -2.36
EXOSC4Q9NPD3 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.34□□□□□ -2.36
EXOSC4Q9NPD3 RNU6-191P-201ENST00000516295 94 ntBASIC0.34□□□□□ -2.36
EXOSC4Q9NPD3 RNU6-875P-201ENST00000516488 106 ntBASIC0.34□□□□□ -2.36
EXOSC4Q9NPD3 RNU7-25P-201ENST00000516544 62 ntBASIC0.34□□□□□ -2.36
EXOSC4Q9NPD3 AC040926.1-201ENST00000530195 238 ntBASIC0.34□□□□□ -2.36
EXOSC4Q9NPD3 AC007485.1-201ENST00000616755 206 ntBASIC0.34□□□□□ -2.36
EXOSC4Q9NPD3 RMST_2.1-201ENST00000617263 136 ntBASIC0.34□□□□□ -2.36
EXOSC4Q9NPD3 AC112487.2-201ENST00000637950 304 ntBASIC0.34□□□□□ -2.36
EXOSC4Q9NPD3 RNU6-580P-201ENST00000365159 107 ntBASIC0.33□□□□□ -2.36
EXOSC4Q9NPD3 RNU1-115P-201ENST00000365329 160 ntBASIC0.33□□□□□ -2.36
EXOSC4Q9NPD3 Y_RNA.418-201ENST00000384029 102 ntBASIC0.33□□□□□ -2.36
EXOSC4Q9NPD3 Y_RNA.547-201ENST00000384654 119 ntBASIC0.33□□□□□ -2.36
EXOSC4Q9NPD3 MIR520F-201ENST00000384824 87 ntBASIC0.33□□□□□ -2.36
EXOSC4Q9NPD3 RNU6-308P-201ENST00000390957 107 ntBASIC0.33□□□□□ -2.36
EXOSC4Q9NPD3 RNU6-383P-201ENST00000410864 94 ntBASIC0.33□□□□□ -2.36
EXOSC4Q9NPD3 RNU6-847P-201ENST00000411115 108 ntBASIC0.33□□□□□ -2.36
EXOSC4Q9NPD3 MTCO2P12-201ENST00000427426 682 ntBASIC0.33□□□□□ -2.36
EXOSC4Q9NPD3 AC098934.3-201ENST00000430450 190 ntBASIC0.33□□□□□ -2.36
EXOSC4Q9NPD3 SEPT14P8-201ENST00000508026 178 ntBASIC0.33□□□□□ -2.36
EXOSC4Q9NPD3 RNU2-13P-201ENST00000515909 113 ntBASIC0.33□□□□□ -2.36
EXOSC4Q9NPD3 RNU6-977P-201ENST00000516411 103 ntBASIC0.33□□□□□ -2.36
EXOSC4Q9NPD3 MIR4771-2-201ENST00000577758 74 ntBASIC0.33□□□□□ -2.36
EXOSC4Q9NPD3 MIR4771-1-201ENST00000582617 74 ntBASIC0.33□□□□□ -2.36
EXOSC4Q9NPD3 AL512605.2-201ENST00000592972 256 ntBASIC0.33□□□□□ -2.36
EXOSC4Q9NPD3 LARP7P1-201ENST00000605576 316 ntBASIC0.33□□□□□ -2.36
EXOSC4Q9NPD3 Y_RNA.70-201ENST00000362886 110 ntBASIC0.32□□□□□ -2.36
EXOSC4Q9NPD3 SNORA1.2-201ENST00000365189 134 ntBASIC0.32□□□□□ -2.36
EXOSC4Q9NPD3 RNU6-102P-201ENST00000384485 104 ntBASIC0.32□□□□□ -2.36
EXOSC4Q9NPD3 RNU6-763P-201ENST00000390865 106 ntBASIC0.32□□□□□ -2.36
EXOSC4Q9NPD3 Y_RNA.579-201ENST00000390939 94 ntBASIC0.32□□□□□ -2.36
EXOSC4Q9NPD3 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.32□□□□□ -2.36
EXOSC4Q9NPD3 Y_RNA.602-201ENST00000410535 92 ntBASIC0.32□□□□□ -2.36
EXOSC4Q9NPD3 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.32□□□□□ -2.36
EXOSC4Q9NPD3 FGF7P4-201ENST00000509595 295 ntBASIC0.32□□□□□ -2.36
EXOSC4Q9NPD3 SNORA68.3-201ENST00000515906 83 ntBASIC0.32□□□□□ -2.36
EXOSC4Q9NPD3 RNU6-397P-201ENST00000516226 104 ntBASIC0.32□□□□□ -2.36
EXOSC4Q9NPD3 RNU6-1223P-201ENST00000517124 104 ntBASIC0.32□□□□□ -2.36
EXOSC4Q9NPD3 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC0.32□□□□□ -2.36
EXOSC4Q9NPD3 Z83818.1-201ENST00000603584 150 ntBASIC0.32□□□□□ -2.36
EXOSC4Q9NPD3 AP000753.3-201ENST00000604083 169 ntBASIC0.32□□□□□ -2.36
EXOSC4Q9NPD3 SNORD113-5-201ENST00000607261 78 ntBASIC0.32□□□□□ -2.36
EXOSC4Q9NPD3 uc_338.6-201ENST00000613544 171 ntBASIC0.32□□□□□ -2.36
EXOSC4Q9NPD3 SNORD113-8-201ENST00000363497 74 ntBASIC0.31□□□□□ -2.36
EXOSC4Q9NPD3 Y_RNA.376-201ENST00000365638 108 ntBASIC0.31□□□□□ -2.36
EXOSC4Q9NPD3 SNORA50A-201ENST00000384225 134 ntBASIC0.31□□□□□ -2.36
EXOSC4Q9NPD3 MIR573-201ENST00000384964 99 ntBASIC0.31□□□□□ -2.36
EXOSC4Q9NPD3 MIR140-201ENST00000385282 100 ntBASIC0.31□□□□□ -2.36
EXOSC4Q9NPD3 RNA5SP247-201ENST00000411181 105 ntBASIC0.31□□□□□ -2.36
EXOSC4Q9NPD3 RNU6-177P-201ENST00000411257 104 ntBASIC0.31□□□□□ -2.36
EXOSC4Q9NPD3 RNU7-67P-201ENST00000459003 62 ntBASIC0.31□□□□□ -2.36
EXOSC4Q9NPD3 MRPS35P2-201ENST00000508242 191 ntBASIC0.31□□□□□ -2.36
EXOSC4Q9NPD3 SCARNA8-201ENST00000515924 131 ntBASIC0.31□□□□□ -2.36
EXOSC4Q9NPD3 RNU6-976P-201ENST00000516086 111 ntBASIC0.31□□□□□ -2.36
EXOSC4Q9NPD3 Y_RNA.666-201ENST00000516187 112 ntBASIC0.31□□□□□ -2.36
EXOSC4Q9NPD3 RNU6-764P-201ENST00000516396 105 ntBASIC0.31□□□□□ -2.36
EXOSC4Q9NPD3 RNU6-958P-201ENST00000516995 106 ntBASIC0.31□□□□□ -2.36
EXOSC4Q9NPD3 AL078603.1-201ENST00000603824 313 ntBASIC0.31□□□□□ -2.36
EXOSC4Q9NPD3 AL162730.1-201ENST00000605734 292 ntBASIC0.31□□□□□ -2.36
EXOSC4Q9NPD3 AC020891.4-201ENST00000605745 93 ntBASIC0.31□□□□□ -2.36
EXOSC4Q9NPD3 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.31□□□□□ -2.36
EXOSC4Q9NPD3 uc_338.4-201ENST00000616635 176 ntBASIC0.31□□□□□ -2.36
EXOSC4Q9NPD3 AL138825.1-201ENST00000618587 192 ntBASIC0.31□□□□□ -2.36
EXOSC4Q9NPD3 AC243829.3-201ENST00000622177 108 ntBASIC0.31□□□□□ -2.36
EXOSC4Q9NPD3 AC022140.2-201ENST00000623500 188 ntBASIC0.31□□□□□ -2.36
EXOSC4Q9NPD3 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.3□□□□□ -2.36
EXOSC4Q9NPD3 MIR548O-201ENST00000408583 114 ntBASIC0.3□□□□□ -2.36
EXOSC4Q9NPD3 AC236972.2-201ENST00000434979 310 ntBASIC0.3□□□□□ -2.36
EXOSC4Q9NPD3 AC002350.1-201ENST00000490759 375 ntBASIC0.3□□□□□ -2.36
EXOSC4Q9NPD3 RNU6-1170P-201ENST00000515974 106 ntBASIC0.3□□□□□ -2.36
EXOSC4Q9NPD3 RNU7-149P-201ENST00000516739 59 ntBASIC0.3□□□□□ -2.36
EXOSC4Q9NPD3 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.3□□□□□ -2.36
EXOSC4Q9NPD3 AL049861.1-201ENST00000603130 150 ntBASIC0.3□□□□□ -2.36
EXOSC4Q9NPD3 MIR6513-201ENST00000621188 64 ntBASIC0.3□□□□□ -2.36
EXOSC4Q9NPD3 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.29□□□□□ -2.36
EXOSC4Q9NPD3 MIR18A-201ENST00000362310 71 ntBASIC0.29□□□□□ -2.36
EXOSC4Q9NPD3 RNU6-899P-201ENST00000363947 107 ntBASIC0.29□□□□□ -2.36
EXOSC4Q9NPD3 Y_RNA.222-201ENST00000364264 102 ntBASIC0.29□□□□□ -2.36
EXOSC4Q9NPD3 Y_RNA.241-201ENST00000364470 117 ntBASIC0.29□□□□□ -2.36
EXOSC4Q9NPD3 MT-TN-201ENST00000387400 73 ntBASIC0.29□□□□□ -2.36
EXOSC4Q9NPD3 Y_RNA.637-201ENST00000459424 114 ntBASIC0.29□□□□□ -2.36
EXOSC4Q9NPD3 AC091959.1-201ENST00000495857 238 ntBASIC0.29□□□□□ -2.36
EXOSC4Q9NPD3 RN7SKP12-201ENST00000516275 143 ntBASIC0.29□□□□□ -2.36
EXOSC4Q9NPD3 RNU6-1007P-201ENST00000516586 107 ntBASIC0.29□□□□□ -2.36
EXOSC4Q9NPD3 Y_RNA.713-201ENST00000517013 96 ntBASIC0.29□□□□□ -2.36
EXOSC4Q9NPD3 AC007751.1-201ENST00000529260 376 ntBASIC0.29□□□□□ -2.36
EXOSC4Q9NPD3 MIR3612-201ENST00000579753 87 ntBASIC0.29□□□□□ -2.36
EXOSC4Q9NPD3 MIR4804-201ENST00000581683 73 ntBASIC0.29□□□□□ -2.36
EXOSC4Q9NPD3 MIR4676-201ENST00000583078 72 ntBASIC0.29□□□□□ -2.36
EXOSC4Q9NPD3 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.28□□□□□ -2.36
EXOSC4Q9NPD3 MIR377-201ENST00000362145 69 ntBASIC0.28□□□□□ -2.36
EXOSC4Q9NPD3 RNU6-1205P-201ENST00000363625 106 ntBASIC0.28□□□□□ -2.36
EXOSC4Q9NPD3 Y_RNA.197-201ENST00000364004 102 ntBASIC0.28□□□□□ -2.36
EXOSC4Q9NPD3 Y_RNA.263-201ENST00000364659 114 ntBASIC0.28□□□□□ -2.36
EXOSC4Q9NPD3 RNU1-133P-201ENST00000364867 167 ntBASIC0.28□□□□□ -2.36
EXOSC4Q9NPD3 RNU6-1009P-201ENST00000390996 107 ntBASIC0.28□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 171.5 ms