Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 MIR4659A-201ENST00000580269 81 ntBASIC-0.02□□□□□ -2.41
USP42Q9H9J4 MIR5188-201ENST00000583467 113 ntBASIC-0.02□□□□□ -2.41
USP42Q9H9J4 MIR3688-2-201ENST00000636963 87 ntBASIC-0.02□□□□□ -2.41
USP42Q9H9J4 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC-0.03□□□□□ -2.41
USP42Q9H9J4 SNORD81.1-201ENST00000363064 77 ntBASIC-0.03□□□□□ -2.41
USP42Q9H9J4 RNA5SP214-201ENST00000363378 118 ntBASIC-0.03□□□□□ -2.41
USP42Q9H9J4 SNORA1.2-201ENST00000365189 134 ntBASIC-0.03□□□□□ -2.41
USP42Q9H9J4 Y_RNA.456-201ENST00000384232 111 ntBASIC-0.03□□□□□ -2.41
USP42Q9H9J4 SNORD116-2-201ENST00000384274 95 ntBASIC-0.03□□□□□ -2.41
USP42Q9H9J4 SNORD116-6-201ENST00000384711 96 ntBASIC-0.03□□□□□ -2.41
USP42Q9H9J4 Y_RNA.577-201ENST00000384794 101 ntBASIC-0.03□□□□□ -2.41
USP42Q9H9J4 MIR125B2-201ENST00000385128 89 ntBASIC-0.03□□□□□ -2.41
USP42Q9H9J4 RNU6-510P-201ENST00000391239 108 ntBASIC-0.03□□□□□ -2.41
USP42Q9H9J4 MTND1P2-201ENST00000430604 821 ntBASIC-0.03□□□□□ -2.41
USP42Q9H9J4 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC-0.03□□□□□ -2.41
USP42Q9H9J4 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC-0.03□□□□□ -2.41
USP42Q9H9J4 RPL23AP91-201ENST00000569211 455 ntBASIC-0.03□□□□□ -2.41
USP42Q9H9J4 DEFB117-201ENST00000602356 141 ntBASIC-0.03□□□□□ -2.41
USP42Q9H9J4 PISRT1.1-201ENST00000616930 107 ntBASIC-0.03□□□□□ -2.41
USP42Q9H9J4 AL669831.3-213ENST00000636676 183 ntBASIC-0.03□□□□□ -2.41
USP42Q9H9J4 Y_RNA.60-201ENST00000362831 98 ntBASIC-0.04□□□□□ -2.42
USP42Q9H9J4 SNORA42.1-201ENST00000363515 137 ntBASIC-0.04□□□□□ -2.42
USP42Q9H9J4 RNU6-1099P-201ENST00000363533 107 ntBASIC-0.04□□□□□ -2.42
USP42Q9H9J4 RNU4-50P-201ENST00000364361 141 ntBASIC-0.04□□□□□ -2.42
USP42Q9H9J4 RNU6-923P-201ENST00000364753 107 ntBASIC-0.04□□□□□ -2.42
USP42Q9H9J4 MIR802-201ENST00000390235 94 ntBASIC-0.04□□□□□ -2.42
USP42Q9H9J4 SNORD78.2-201ENST00000391076 69 ntBASIC-0.04□□□□□ -2.42
USP42Q9H9J4 MIR1265-201ENST00000408444 86 ntBASIC-0.04□□□□□ -2.42
USP42Q9H9J4 RNU6-710P-201ENST00000410424 105 ntBASIC-0.04□□□□□ -2.42
USP42Q9H9J4 Y_RNA.599-201ENST00000410489 109 ntBASIC-0.04□□□□□ -2.42
USP42Q9H9J4 SNORD11-201ENST00000459124 84 ntBASIC-0.04□□□□□ -2.42
USP42Q9H9J4 RNU7-169P-201ENST00000459456 61 ntBASIC-0.04□□□□□ -2.42
USP42Q9H9J4 SCARNA8-201ENST00000515924 131 ntBASIC-0.04□□□□□ -2.42
USP42Q9H9J4 AC112693.2-201ENST00000556538 232 ntBASIC-0.04□□□□□ -2.42
USP42Q9H9J4 SNORD92-201ENST00000585078 85 ntBASIC-0.04□□□□□ -2.42
USP42Q9H9J4 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC-0.04□□□□□ -2.42
USP42Q9H9J4 5S_rRNA.15-201ENST00000611169 127 ntBASIC-0.04□□□□□ -2.42
USP42Q9H9J4 TPTEP1-208ENST00000636884 213 ntBASIC-0.04□□□□□ -2.42
USP42Q9H9J4 Y_RNA.170-201ENST00000363746 110 ntBASIC-0.05□□□□□ -2.42
USP42Q9H9J4 Y_RNA.230-201ENST00000364348 109 ntBASIC-0.05□□□□□ -2.42
USP42Q9H9J4 RNU4-24P-201ENST00000364565 139 ntBASIC-0.05□□□□□ -2.42
USP42Q9H9J4 RNU6-1175P-201ENST00000365200 107 ntBASIC-0.05□□□□□ -2.42
USP42Q9H9J4 Y_RNA.453-201ENST00000384223 109 ntBASIC-0.05□□□□□ -2.42
USP42Q9H9J4 Y_RNA.547-201ENST00000384654 119 ntBASIC-0.05□□□□□ -2.42
USP42Q9H9J4 Y_RNA.567-201ENST00000384736 106 ntBASIC-0.05□□□□□ -2.42
USP42Q9H9J4 Y_RNA.570-201ENST00000384750 101 ntBASIC-0.05□□□□□ -2.42
USP42Q9H9J4 Y_RNA.573-201ENST00000384763 105 ntBASIC-0.05□□□□□ -2.42
USP42Q9H9J4 RNU6-913P-201ENST00000390913 95 ntBASIC-0.05□□□□□ -2.42
USP42Q9H9J4 SNORD115-47-201ENST00000391226 86 ntBASIC-0.05□□□□□ -2.42
USP42Q9H9J4 AC236972.2-201ENST00000434979 310 ntBASIC-0.05□□□□□ -2.42
USP42Q9H9J4 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC-0.05□□□□□ -2.42
USP42Q9H9J4 MIR18B-201ENST00000454574 71 ntBASIC-0.05□□□□□ -2.42
USP42Q9H9J4 RNU7-185P-201ENST00000459215 60 ntBASIC-0.05□□□□□ -2.42
USP42Q9H9J4 snoU13.16-201ENST00000459350 104 ntBASIC-0.05□□□□□ -2.42
USP42Q9H9J4 PRDX4P1-201ENST00000507189 574 ntBASIC-0.05□□□□□ -2.42
USP42Q9H9J4 RNA5SP227-201ENST00000516184 113 ntBASIC-0.05□□□□□ -2.42
USP42Q9H9J4 RNU7-25P-201ENST00000516544 62 ntBASIC-0.05□□□□□ -2.42
USP42Q9H9J4 RN7SKP295-201ENST00000517264 153 ntBASIC-0.05□□□□□ -2.42
USP42Q9H9J4 AC133485.4-201ENST00000561835 220 ntBASIC-0.05□□□□□ -2.42
USP42Q9H9J4 MIR4423-201ENST00000580922 80 ntBASIC-0.05□□□□□ -2.42
USP42Q9H9J4 AC090517.2-201ENST00000614966 680 ntBASIC-0.05□□□□□ -2.42
USP42Q9H9J4 MIR548AY-201ENST00000617669 107 ntBASIC-0.05□□□□□ -2.42
USP42Q9H9J4 AC098679.4-201ENST00000624241 654 ntBASIC-0.05□□□□□ -2.42
USP42Q9H9J4 VPS35-212ENST00000640313 141 ntTSL 5 BASIC-0.05□□□□□ -2.42
USP42Q9H9J4 RNU6-1048P-201ENST00000364054 107 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 RNU6-364P-201ENST00000384387 107 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 MIR588-201ENST00000384900 83 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 RNU6-1319P-201ENST00000390855 104 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 RNU6-747P-201ENST00000390928 104 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 RNU6-241P-201ENST00000391148 104 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 RNU6-447P-201ENST00000410293 104 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 RNU6-1118P-201ENST00000410382 104 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 RNU6-1076P-201ENST00000410397 104 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 RNU6-355P-201ENST00000410427 104 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 RNU6-791P-201ENST00000410467 104 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 RNU6-705P-201ENST00000410601 104 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 RNU6-1100P-201ENST00000410691 104 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 RNU6-860P-201ENST00000410860 104 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 RNU2-14P-201ENST00000411053 191 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 RNU6-1217P-201ENST00000411276 104 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 RNU6-785P-201ENST00000411324 104 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 Z95118.1-201ENST00000421372 247 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC-0.06□□□□□ -2.42
USP42Q9H9J4 RNU6-307P-201ENST00000516743 106 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 RNU7-156P-201ENST00000517214 74 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 IGLVI-20-201ENST00000519296 130 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 MIR8055-201ENST00000610739 97 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 U6.90-201ENST00000614007 104 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 AC048344.4-201ENST00000619744 527 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 AC134878.1-201ENST00000619901 243 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 MIR6755-201ENST00000619993 66 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 U6.70-201ENST00000620287 104 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 AC138305.3-201ENST00000624988 240 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 U6.92-201ENST00000636464 89 ntBASIC-0.06□□□□□ -2.42
USP42Q9H9J4 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC-0.07□□□□□ -2.42
USP42Q9H9J4 RNU6-674P-201ENST00000363831 107 ntBASIC-0.07□□□□□ -2.42
USP42Q9H9J4 Y_RNA.390-201ENST00000383932 102 ntBASIC-0.07□□□□□ -2.42
USP42Q9H9J4 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.07□□□□□ -2.42
USP42Q9H9J4 RNU6-1165P-201ENST00000410119 107 ntBASIC-0.07□□□□□ -2.42
USP42Q9H9J4 Y_RNA.646-201ENST00000410980 101 ntBASIC-0.07□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms