Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 RNU6-450P-201ENST00000364654 107 ntBASIC0.93□□□□□ -2.26
CHMP4AQ9BY43 Y_RNA.431-201ENST00000384086 102 ntBASIC0.93□□□□□ -2.26
CHMP4AQ9BY43 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.93□□□□□ -2.26
CHMP4AQ9BY43 U8.17-201ENST00000391292 132 ntBASIC0.93□□□□□ -2.26
CHMP4AQ9BY43 RNU6-191P-201ENST00000516295 94 ntBASIC0.93□□□□□ -2.26
CHMP4AQ9BY43 RNU7-181P-201ENST00000517234 74 ntBASIC0.93□□□□□ -2.26
CHMP4AQ9BY43 MIR5000-201ENST00000577717 103 ntBASIC0.93□□□□□ -2.26
CHMP4AQ9BY43 7SK.10-201ENST00000621414 298 ntBASIC0.93□□□□□ -2.26
CHMP4AQ9BY43 AC090574.1-201ENST00000623186 233 ntBASIC0.93□□□□□ -2.26
CHMP4AQ9BY43 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.92□□□□□ -2.26
CHMP4AQ9BY43 Y_RNA.31-201ENST00000362574 102 ntBASIC0.92□□□□□ -2.26
CHMP4AQ9BY43 RNU6-674P-201ENST00000363831 107 ntBASIC0.92□□□□□ -2.26
CHMP4AQ9BY43 RNU6-654P-201ENST00000364373 107 ntBASIC0.92□□□□□ -2.26
CHMP4AQ9BY43 RNU6-1335P-201ENST00000365426 107 ntBASIC0.92□□□□□ -2.26
CHMP4AQ9BY43 Y_RNA.395-201ENST00000383945 109 ntBASIC0.92□□□□□ -2.26
CHMP4AQ9BY43 Y_RNA.418-201ENST00000384029 102 ntBASIC0.92□□□□□ -2.26
CHMP4AQ9BY43 RNU6-102P-201ENST00000384485 104 ntBASIC0.92□□□□□ -2.26
CHMP4AQ9BY43 RNU6-613P-201ENST00000410412 108 ntBASIC0.92□□□□□ -2.26
CHMP4AQ9BY43 SNRPGP14-201ENST00000435400 219 ntBASIC0.92□□□□□ -2.26
CHMP4AQ9BY43 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.92□□□□□ -2.26
CHMP4AQ9BY43 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.92□□□□□ -2.26
CHMP4AQ9BY43 AC133485.1-201ENST00000567176 124 ntBASIC0.92□□□□□ -2.26
CHMP4AQ9BY43 AC138907.6-201ENST00000568401 126 ntBASIC0.92□□□□□ -2.26
CHMP4AQ9BY43 AC068700.1-201ENST00000565862 3754 ntBASIC0.91□□□□□ -2.26
CHMP4AQ9BY43 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.91□□□□□ -2.26
CHMP4AQ9BY43 SNORA1.2-201ENST00000365189 134 ntBASIC0.91□□□□□ -2.26
CHMP4AQ9BY43 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.91□□□□□ -2.26
CHMP4AQ9BY43 AL392103.1-201ENST00000447000 198 ntBASIC0.91□□□□□ -2.26
CHMP4AQ9BY43 AL117351.2-201ENST00000513571 157 ntBASIC0.91□□□□□ -2.26
CHMP4AQ9BY43 Y_RNA.715-201ENST00000517082 110 ntBASIC0.91□□□□□ -2.26
CHMP4AQ9BY43 AC036111.3-201ENST00000526389 112 ntBASIC0.91□□□□□ -2.26
CHMP4AQ9BY43 AC104695.3-201ENST00000604052 296 ntBASIC0.91□□□□□ -2.26
CHMP4AQ9BY43 RNU6-899P-201ENST00000363947 107 ntBASIC0.9□□□□□ -2.27
CHMP4AQ9BY43 SNORA63.7-201ENST00000365579 123 ntBASIC0.9□□□□□ -2.27
CHMP4AQ9BY43 SNORA2B-201ENST00000384583 137 ntBASIC0.9□□□□□ -2.27
CHMP4AQ9BY43 Y_RNA.569-201ENST00000384749 103 ntBASIC0.9□□□□□ -2.27
CHMP4AQ9BY43 RNA5SP95-201ENST00000410319 137 ntBASIC0.9□□□□□ -2.27
CHMP4AQ9BY43 MRPS35P2-201ENST00000508242 191 ntBASIC0.9□□□□□ -2.27
CHMP4AQ9BY43 SCARNA8-201ENST00000515924 131 ntBASIC0.9□□□□□ -2.27
CHMP4AQ9BY43 LARP7P1-201ENST00000605576 316 ntBASIC0.9□□□□□ -2.27
CHMP4AQ9BY43 MIR6516-201ENST00000630554 81 ntBASIC0.9□□□□□ -2.27
CHMP4AQ9BY43 RNU4-90P-201ENST00000362773 141 ntBASIC0.89□□□□□ -2.27
CHMP4AQ9BY43 RNU6-1205P-201ENST00000363625 106 ntBASIC0.89□□□□□ -2.27
CHMP4AQ9BY43 Y_RNA.183-201ENST00000363882 113 ntBASIC0.89□□□□□ -2.27
CHMP4AQ9BY43 Y_RNA.222-201ENST00000364264 102 ntBASIC0.89□□□□□ -2.27
CHMP4AQ9BY43 SNORD42.2-201ENST00000365570 69 ntBASIC0.89□□□□□ -2.27
CHMP4AQ9BY43 Y_RNA.376-201ENST00000365638 108 ntBASIC0.89□□□□□ -2.27
CHMP4AQ9BY43 Y_RNA.389-201ENST00000383924 113 ntBASIC0.89□□□□□ -2.27
CHMP4AQ9BY43 SNORA51.10-201ENST00000384418 136 ntBASIC0.89□□□□□ -2.27
CHMP4AQ9BY43 RNU6-763P-201ENST00000390865 106 ntBASIC0.89□□□□□ -2.27
CHMP4AQ9BY43 Y_RNA.645-201ENST00000391229 102 ntBASIC0.89□□□□□ -2.27
CHMP4AQ9BY43 AL603910.2-201ENST00000407268 136 ntBASIC0.89□□□□□ -2.27
CHMP4AQ9BY43 MIR1827-201ENST00000408549 66 ntBASIC0.89□□□□□ -2.27
CHMP4AQ9BY43 SNORD99-201ENST00000408612 74 ntBASIC0.89□□□□□ -2.27
CHMP4AQ9BY43 RNU6-101P-201ENST00000410323 104 ntBASIC0.89□□□□□ -2.27
CHMP4AQ9BY43 AC023449.1-201ENST00000454464 154 ntBASIC0.89□□□□□ -2.27
CHMP4AQ9BY43 SNORD11-201ENST00000459124 84 ntBASIC0.89□□□□□ -2.27
CHMP4AQ9BY43 RNU6-764P-201ENST00000516396 105 ntBASIC0.89□□□□□ -2.27
CHMP4AQ9BY43 RNU6-897P-201ENST00000517135 105 ntBASIC0.89□□□□□ -2.27
CHMP4AQ9BY43 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.89□□□□□ -2.27
CHMP4AQ9BY43 RAC1P9-201ENST00000604990 392 ntBASIC0.89□□□□□ -2.27
CHMP4AQ9BY43 RNU6-823P-201ENST00000391042 103 ntBASIC0.88□□□□□ -2.27
CHMP4AQ9BY43 MIR1302-7-201ENST00000408841 72 ntBASIC0.88□□□□□ -2.27
CHMP4AQ9BY43 MTATP6P23-201ENST00000440153 476 ntBASIC0.88□□□□□ -2.27
CHMP4AQ9BY43 HSPE1P25-201ENST00000455484 251 ntBASIC0.88□□□□□ -2.27
CHMP4AQ9BY43 RNU6-496P-201ENST00000516145 99 ntBASIC0.88□□□□□ -2.27
CHMP4AQ9BY43 RNU6-396P-201ENST00000365369 105 ntBASIC0.87□□□□□ -2.27
CHMP4AQ9BY43 RNU4-45P-201ENST00000365469 141 ntBASIC0.87□□□□□ -2.27
CHMP4AQ9BY43 MT-TN-201ENST00000387400 73 ntBASIC0.87□□□□□ -2.27
CHMP4AQ9BY43 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.87□□□□□ -2.27
CHMP4AQ9BY43 PMCHL1-202ENST00000423102 261 ntBASIC0.87□□□□□ -2.27
CHMP4AQ9BY43 Y_RNA.639-201ENST00000458981 102 ntBASIC0.87□□□□□ -2.27
CHMP4AQ9BY43 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.87□□□□□ -2.27
CHMP4AQ9BY43 MIR377-201ENST00000362145 69 ntBASIC0.86□□□□□ -2.27
CHMP4AQ9BY43 Y_RNA.136-201ENST00000363444 102 ntBASIC0.86□□□□□ -2.27
CHMP4AQ9BY43 Y_RNA.168-201ENST00000363740 102 ntBASIC0.86□□□□□ -2.27
CHMP4AQ9BY43 Y_RNA.537-201ENST00000384626 109 ntBASIC0.86□□□□□ -2.27
CHMP4AQ9BY43 SNORD115-46-201ENST00000390982 71 ntBASIC0.86□□□□□ -2.27
CHMP4AQ9BY43 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.86□□□□□ -2.27
CHMP4AQ9BY43 MTND4LP11-201ENST00000422184 280 ntBASIC0.86□□□□□ -2.27
CHMP4AQ9BY43 MTCO1P5-201ENST00000433573 344 ntBASIC0.86□□□□□ -2.27
CHMP4AQ9BY43 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.86□□□□□ -2.27
CHMP4AQ9BY43 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.86□□□□□ -2.27
CHMP4AQ9BY43 AL512605.2-201ENST00000592972 256 ntBASIC0.86□□□□□ -2.27
CHMP4AQ9BY43 AC006441.5-201ENST00000612680 209 ntBASIC0.86□□□□□ -2.27
CHMP4AQ9BY43 RMST_2.1-201ENST00000617263 136 ntBASIC0.86□□□□□ -2.27
CHMP4AQ9BY43 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.86□□□□□ -2.27
CHMP4AQ9BY43 MIR1-1-201ENST00000362147 71 ntBASIC0.85□□□□□ -2.27
CHMP4AQ9BY43 RNU1-119P-201ENST00000391122 165 ntBASIC0.85□□□□□ -2.27
CHMP4AQ9BY43 RNU6-383P-201ENST00000410864 94 ntBASIC0.85□□□□□ -2.27
CHMP4AQ9BY43 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.85□□□□□ -2.27
CHMP4AQ9BY43 SNORA40.15-201ENST00000516884 107 ntBASIC0.85□□□□□ -2.27
CHMP4AQ9BY43 C8orf59P2-201ENST00000603441 271 ntBASIC0.85□□□□□ -2.27
CHMP4AQ9BY43 MIR4791-201ENST00000607666 84 ntBASIC0.85□□□□□ -2.27
CHMP4AQ9BY43 RNU6-144P-201ENST00000383951 107 ntBASIC0.84□□□□□ -2.27
CHMP4AQ9BY43 MIR508-201ENST00000384857 115 ntBASIC0.84□□□□□ -2.27
CHMP4AQ9BY43 SNORD105-201ENST00000386910 85 ntBASIC0.84□□□□□ -2.27
CHMP4AQ9BY43 MIR1252-201ENST00000408861 65 ntBASIC0.84□□□□□ -2.27
CHMP4AQ9BY43 RNU4-54P-201ENST00000516428 129 ntBASIC0.84□□□□□ -2.27
CHMP4AQ9BY43 Y_RNA.721-201ENST00000517207 102 ntBASIC0.84□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms