Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 SNORD115-15-201ENST00000364809 81 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 SNORD115-1-201ENST00000364961 82 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 SNORD115-26-201ENST00000365067 82 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 SNORD115-10-201ENST00000365073 81 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 Y_RNA.358-201ENST00000365491 99 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 SNORD115-43-201ENST00000365503 82 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 SNORD115-36-201ENST00000365629 82 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 RNU6-903P-201ENST00000391270 109 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 MTATP6P18-201ENST00000417994 673 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 MTND3P23-201ENST00000431980 347 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 Y_RNA.672-201ENST00000516289 104 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 RNU6-751P-201ENST00000516382 101 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 RNU6-958P-201ENST00000516995 106 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC-0.99□□□□□ -2.57
USF3Q68DE3 SNORD115-40-201ENST00000606510 82 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 AL391834.2-201ENST00000609982 546 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 Y_RNA.7-201ENST00000362352 102 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 Y_RNA.608-201ENST00000410647 95 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 MTATP6P20-201ENST00000414147 562 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 AC108059.2-201ENST00000434626 151 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 AC244505.6-201ENST00000452829 130 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 MIR5591-201ENST00000578248 65 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 MIR8066-201ENST00000617280 78 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 AL391262.2-201ENST00000622466 494 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 AC007671.2-201ENST00000637344 619 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 RNU6-119P-201ENST00000364882 107 ntBASIC-1□□□□□ -2.57
USF3Q68DE3 SNORD24-201ENST00000383884 75 ntBASIC-1□□□□□ -2.57
USF3Q68DE3 RNU6-708P-201ENST00000384217 107 ntBASIC-1□□□□□ -2.57
USF3Q68DE3 MIR521-1-201ENST00000384902 87 ntBASIC-1□□□□□ -2.57
USF3Q68DE3 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC-1□□□□□ -2.57
USF3Q68DE3 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC-1□□□□□ -2.57
USF3Q68DE3 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC-1□□□□□ -2.57
USF3Q68DE3 RNU7-104P-201ENST00000459398 79 ntBASIC-1□□□□□ -2.57
USF3Q68DE3 SNORD38.3-201ENST00000516599 73 ntBASIC-1□□□□□ -2.57
USF3Q68DE3 AP003733.2-201ENST00000529409 171 ntBASIC-1□□□□□ -2.57
USF3Q68DE3 AC024405.2-202ENST00000532731 184 ntBASIC-1□□□□□ -2.57
USF3Q68DE3 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC-1□□□□□ -2.57
USF3Q68DE3 CPDP1-201ENST00000579660 283 ntBASIC-1□□□□□ -2.57
USF3Q68DE3 Y_RNA.49-201ENST00000362714 112 ntBASIC-1□□□□□ -2.57
USF3Q68DE3 RNY4P27-201ENST00000363341 96 ntBASIC-1□□□□□ -2.57
USF3Q68DE3 Y_RNA.133-201ENST00000363428 110 ntBASIC-1□□□□□ -2.57
USF3Q68DE3 SNORA63.5-201ENST00000363548 123 ntBASIC-1□□□□□ -2.57
USF3Q68DE3 Y_RNA.329-201ENST00000365209 107 ntBASIC-1□□□□□ -2.57
USF3Q68DE3 RNU6-281P-201ENST00000384212 103 ntBASIC-1□□□□□ -2.57
USF3Q68DE3 MTCO2P27-201ENST00000420740 428 ntBASIC-1□□□□□ -2.57
USF3Q68DE3 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC-1□□□□□ -2.57
USF3Q68DE3 USP9YP12-201ENST00000450481 570 ntBASIC-1□□□□□ -2.57
USF3Q68DE3 MIR4703-201ENST00000577728 79 ntBASIC-1□□□□□ -2.57
USF3Q68DE3 RNU6-86P-201ENST00000606534 107 ntBASIC-1□□□□□ -2.57
USF3Q68DE3 AC104010.1-201ENST00000616889 150 ntBASIC-1□□□□□ -2.57
USF3Q68DE3 AC132825.6-201ENST00000638861 357 ntBASIC-1□□□□□ -2.57
USF3Q68DE3 AC099654.12-201ENST00000639868 649 ntBASIC-1□□□□□ -2.57
USF3Q68DE3 AL163152.1-201ENST00000642001 374 ntBASIC-1□□□□□ -2.57
USF3Q68DE3 RNU6-1309P-201ENST00000363305 108 ntBASIC-1.01□□□□□ -2.57
USF3Q68DE3 Y_RNA.242-201ENST00000364473 110 ntBASIC-1.01□□□□□ -2.57
USF3Q68DE3 USMG5P1-201ENST00000425964 177 ntBASIC-1.01□□□□□ -2.57
USF3Q68DE3 AP000533.3-201ENST00000447704 118 ntBASIC-1.01□□□□□ -2.57
USF3Q68DE3 RNU7-167P-201ENST00000459160 62 ntBASIC-1.01□□□□□ -2.57
USF3Q68DE3 AC091179.3-201ENST00000474761 144 ntBASIC-1.01□□□□□ -2.57
USF3Q68DE3 RNU7-25P-201ENST00000516544 62 ntBASIC-1.01□□□□□ -2.57
USF3Q68DE3 AC008507.2-201ENST00000588402 1176 ntBASIC-1.01□□□□□ -2.57
USF3Q68DE3 CLPTM1LP1-201ENST00000604519 484 ntBASIC-1.01□□□□□ -2.57
USF3Q68DE3 AC006566.1-201ENST00000608943 513 ntBASIC-1.01□□□□□ -2.57
USF3Q68DE3 MIR20A-201ENST00000362279 71 ntBASIC-1.01□□□□□ -2.57
USF3Q68DE3 RNY1P16-201ENST00000363063 111 ntBASIC-1.01□□□□□ -2.57
USF3Q68DE3 SNORD114-29-201ENST00000364819 70 ntBASIC-1.01□□□□□ -2.57
USF3Q68DE3 MIR588-201ENST00000384900 83 ntBASIC-1.01□□□□□ -2.57
USF3Q68DE3 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC-1.01□□□□□ -2.57
USF3Q68DE3 USP9YP30-201ENST00000430729 455 ntBASIC-1.01□□□□□ -2.57
USF3Q68DE3 RNU6-189P-201ENST00000516120 101 ntBASIC-1.01□□□□□ -2.57
USF3Q68DE3 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC-1.01□□□□□ -2.57
USF3Q68DE3 YWHAEP3-201ENST00000582767 121 ntBASIC-1.01□□□□□ -2.57
USF3Q68DE3 AC027807.2-201ENST00000616099 408 ntBASIC-1.01□□□□□ -2.57
USF3Q68DE3 AP001282.2-201ENST00000616149 309 ntBASIC-1.01□□□□□ -2.57
USF3Q68DE3 AC006386.1-201ENST00000619436 415 ntBASIC-1.01□□□□□ -2.57
USF3Q68DE3 Y_RNA.110-201ENST00000363220 99 ntBASIC-1.02□□□□□ -2.57
USF3Q68DE3 Y_RNA.121-201ENST00000363309 113 ntBASIC-1.02□□□□□ -2.57
USF3Q68DE3 RNU6-1062P-201ENST00000383908 107 ntBASIC-1.02□□□□□ -2.57
USF3Q68DE3 RNU6-949P-201ENST00000384040 107 ntBASIC-1.02□□□□□ -2.57
USF3Q68DE3 MIR617-201ENST00000385030 97 ntBASIC-1.02□□□□□ -2.57
USF3Q68DE3 RNY4P36-201ENST00000391116 96 ntBASIC-1.02□□□□□ -2.57
USF3Q68DE3 MTCO2P16-201ENST00000436962 677 ntBASIC-1.02□□□□□ -2.57
USF3Q68DE3 AL445193.1-201ENST00000441183 141 ntBASIC-1.02□□□□□ -2.57
USF3Q68DE3 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC-1.02□□□□□ -2.57
USF3Q68DE3 Vault.3-201ENST00000516676 95 ntBASIC-1.02□□□□□ -2.57
USF3Q68DE3 AC109347.2-201ENST00000610220 349 ntBASIC-1.02□□□□□ -2.57
USF3Q68DE3 AC069503.3-201ENST00000618674 145 ntBASIC-1.02□□□□□ -2.57
USF3Q68DE3 SNORA26.6-201ENST00000391256 115 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 Y_RNA.621-201ENST00000411065 96 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 SNORD2-201ENST00000459163 69 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-1.03□□□□□ -2.57
USF3Q68DE3 AL353803.5-201ENST00000599815 141 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 AC091931.1-201ENST00000623488 728 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC-1.03□□□□□ -2.57
USF3Q68DE3 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.03□□□□□ -2.57
USF3Q68DE3 RNU6-268P-201ENST00000364174 107 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 Y_RNA.326-201ENST00000365176 113 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 RNU6-449P-201ENST00000383914 107 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 SNORD116-9-201ENST00000384000 95 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 RNU6-1200P-201ENST00000384162 107 ntBASIC-1.03□□□□□ -2.57
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms