Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 RNU6-977P-201ENST00000516411 103 ntBASIC0.15□□□□□ -2.39
FOXF1Q12946 Y_RNA.713-201ENST00000517013 96 ntBASIC0.15□□□□□ -2.39
FOXF1Q12946 MIR3612-201ENST00000579753 87 ntBASIC0.15□□□□□ -2.39
FOXF1Q12946 MIR4804-201ENST00000581683 73 ntBASIC0.15□□□□□ -2.39
FOXF1Q12946 DEFB117-201ENST00000602356 141 ntBASIC0.15□□□□□ -2.39
FOXF1Q12946 AC008608.1-201ENST00000603910 127 ntBASIC0.15□□□□□ -2.39
FOXF1Q12946 AL355297.3-201ENST00000604082 446 ntBASIC0.15□□□□□ -2.39
FOXF1Q12946 AC113139.1-201ENST00000605049 239 ntBASIC0.15□□□□□ -2.39
FOXF1Q12946 AC092794.1-201ENST00000612734 582 ntBASIC0.15□□□□□ -2.39
FOXF1Q12946 AC010487.4-201ENST00000637027 61 ntBASIC0.15□□□□□ -2.39
FOXF1Q12946 MIR924-201ENST00000638017 53 ntBASIC0.15□□□□□ -2.39
FOXF1Q12946 Y_RNA.80-201ENST00000362996 102 ntBASIC0.14□□□□□ -2.39
FOXF1Q12946 RNU4-50P-201ENST00000364361 141 ntBASIC0.14□□□□□ -2.39
FOXF1Q12946 Y_RNA.314-201ENST00000365114 102 ntBASIC0.14□□□□□ -2.39
FOXF1Q12946 Y_RNA.331-201ENST00000365267 102 ntBASIC0.14□□□□□ -2.39
FOXF1Q12946 Y_RNA.485-201ENST00000384395 102 ntBASIC0.14□□□□□ -2.39
FOXF1Q12946 MIR520F-201ENST00000384824 87 ntBASIC0.14□□□□□ -2.39
FOXF1Q12946 MIR613-201ENST00000385248 95 ntBASIC0.14□□□□□ -2.39
FOXF1Q12946 RNU6-1248P-201ENST00000391096 64 ntBASIC0.14□□□□□ -2.39
FOXF1Q12946 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.14□□□□□ -2.39
FOXF1Q12946 SNORD100-201ENST00000408573 76 ntBASIC0.14□□□□□ -2.39
FOXF1Q12946 BTF3P11-201ENST00000426582 477 ntBASIC0.14□□□□□ -2.39
FOXF1Q12946 MIR18B-201ENST00000454574 71 ntBASIC0.14□□□□□ -2.39
FOXF1Q12946 RNU7-56P-201ENST00000458744 62 ntBASIC0.14□□□□□ -2.39
FOXF1Q12946 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.14□□□□□ -2.39
FOXF1Q12946 MIR4771-2-201ENST00000577758 74 ntBASIC0.14□□□□□ -2.39
FOXF1Q12946 MIR4771-1-201ENST00000582617 74 ntBASIC0.14□□□□□ -2.39
FOXF1Q12946 RAC1P9-201ENST00000604990 392 ntBASIC0.14□□□□□ -2.39
FOXF1Q12946 AL121655.1-201ENST00000605811 308 ntBASIC0.14□□□□□ -2.39
FOXF1Q12946 Y_RNA.772-201ENST00000606692 102 ntBASIC0.14□□□□□ -2.39
FOXF1Q12946 MIR4272-201ENST00000635924 64 ntBASIC0.14□□□□□ -2.39
FOXF1Q12946 RNU6-349P-201ENST00000362402 107 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 SNORD115-34-201ENST00000362441 82 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 SNORD115-12-201ENST00000362583 82 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 SNORD115-29-201ENST00000362834 82 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 SNORD115-9-201ENST00000362912 82 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 SNORD115-21-201ENST00000362963 81 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 SNORD115-14-201ENST00000363090 81 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 SNORD115-13-201ENST00000363358 82 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 SNORD115-41-201ENST00000363608 82 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 SNORD115-11-201ENST00000363616 82 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 SNORD115-5-201ENST00000363633 82 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 SNORD115-39-201ENST00000363694 82 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 SNORD115-4-201ENST00000363810 82 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 SNORD115-16-201ENST00000363887 82 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 SNORD115-6-201ENST00000363942 82 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 SNORD115-42-201ENST00000364273 82 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 RNA5SP517-201ENST00000364724 117 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 SNORD115-15-201ENST00000364809 81 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 SNORD115-1-201ENST00000364961 82 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 SNORD115-26-201ENST00000365067 82 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 SNORD115-10-201ENST00000365073 81 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 SNORD81.2-201ENST00000365153 76 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 SNORD115-43-201ENST00000365503 82 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 SNORD115-36-201ENST00000365629 82 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.13□□□□□ -2.39
FOXF1Q12946 RNU6-1040P-201ENST00000383974 107 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 RNU4-30P-201ENST00000410245 143 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 SNORA36B-201ENST00000410438 131 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 NDUFAF4P4-201ENST00000454883 502 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.13□□□□□ -2.39
FOXF1Q12946 AC091959.1-201ENST00000495857 238 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 Y_RNA.661-201ENST00000516003 99 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 AC006600.1-201ENST00000572529 153 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 MIR4431-201ENST00000579990 94 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 MIR4676-201ENST00000583078 72 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 SNORD115-40-201ENST00000606510 82 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 AC011373.1-201ENST00000607270 237 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 AC084781.2-201ENST00000615568 161 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 AC104985.2-201ENST00000620598 500 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 AC092634.7-201ENST00000621022 103 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 MTND4LP32-201ENST00000636111 270 ntBASIC0.13□□□□□ -2.39
FOXF1Q12946 Y_RNA.160-201ENST00000363677 92 ntBASIC0.12□□□□□ -2.39
FOXF1Q12946 RNU6-801P-201ENST00000364087 105 ntBASIC0.12□□□□□ -2.39
FOXF1Q12946 SNORA72.4-201ENST00000384174 132 ntBASIC0.12□□□□□ -2.39
FOXF1Q12946 Y_RNA.551-201ENST00000384661 102 ntBASIC0.12□□□□□ -2.39
FOXF1Q12946 MIR518A1-201ENST00000385068 85 ntBASIC0.12□□□□□ -2.39
FOXF1Q12946 MTND1P14-201ENST00000427400 950 ntBASIC0.12□□□□□ -2.39
FOXF1Q12946 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.12□□□□□ -2.39
FOXF1Q12946 RNU7-73P-201ENST00000458743 63 ntBASIC0.12□□□□□ -2.39
FOXF1Q12946 RNU7-141P-201ENST00000459304 62 ntBASIC0.12□□□□□ -2.39
FOXF1Q12946 AC107297.1-201ENST00000459991 176 ntBASIC0.12□□□□□ -2.39
FOXF1Q12946 RNU6-1232P-201ENST00000516299 86 ntBASIC0.12□□□□□ -2.39
FOXF1Q12946 SNORA62.5-201ENST00000516634 120 ntBASIC0.12□□□□□ -2.39
FOXF1Q12946 RNU6-699P-201ENST00000517081 110 ntBASIC0.12□□□□□ -2.39
FOXF1Q12946 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.12□□□□□ -2.39
FOXF1Q12946 MIR4514-201ENST00000581410 57 ntBASIC0.12□□□□□ -2.39
FOXF1Q12946 AC124312.5-201ENST00000604451 268 ntBASIC0.12□□□□□ -2.39
FOXF1Q12946 DLEU2_2.2-201ENST00000615474 90 ntBASIC0.12□□□□□ -2.39
FOXF1Q12946 AC078938.1-201ENST00000620993 318 ntBASIC0.12□□□□□ -2.39
FOXF1Q12946 Y_RNA.112-201ENST00000363250 102 ntBASIC0.11□□□□□ -2.39
FOXF1Q12946 Y_RNA.286-201ENST00000364813 102 ntBASIC0.11□□□□□ -2.39
FOXF1Q12946 RNU1-115P-201ENST00000365329 160 ntBASIC0.11□□□□□ -2.39
FOXF1Q12946 RNU6-144P-201ENST00000383951 107 ntBASIC0.11□□□□□ -2.39
FOXF1Q12946 RNU6-815P-201ENST00000384080 113 ntBASIC0.11□□□□□ -2.39
FOXF1Q12946 Y_RNA.526-201ENST00000384572 110 ntBASIC0.11□□□□□ -2.39
FOXF1Q12946 MT-TL1-201ENST00000386347 75 ntBASIC0.11□□□□□ -2.39
FOXF1Q12946 RNU6-913P-201ENST00000390913 95 ntBASIC0.11□□□□□ -2.39
FOXF1Q12946 SNORA40.8-201ENST00000411034 126 ntBASIC0.11□□□□□ -2.39
FOXF1Q12946 SNORD71-201ENST00000411292 86 ntBASIC0.11□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 123.6 ms