Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC007336.1-201ENST00000576365 3828 ntBASIC2.46□□□□□ -2.02
RNF4P78317 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.45□□□□□ -2.02
RNF4P78317 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.45□□□□□ -2.02
RNF4P78317 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
RNF4P78317 RNU6-112P-201ENST00000363599 104 ntBASIC2.45□□□□□ -2.02
RNF4P78317 SNORA3A-201ENST00000364113 130 ntBASIC2.45□□□□□ -2.02
RNF4P78317 SCARNA16.3-201ENST00000516595 184 ntBASIC2.45□□□□□ -2.02
RNF4P78317 AC090821.2-201ENST00000523552 176 ntBASIC2.45□□□□□ -2.02
RNF4P78317 MIR3613-201ENST00000579844 87 ntBASIC2.45□□□□□ -2.02
RNF4P78317 HSPE1P19-201ENST00000603327 295 ntBASIC2.45□□□□□ -2.02
RNF4P78317 AC006023.1-201ENST00000603944 259 ntBASIC2.45□□□□□ -2.02
RNF4P78317 uc_338.28-201ENST00000612082 187 ntBASIC2.45□□□□□ -2.02
RNF4P78317 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
RNF4P78317 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.45□□□□□ -2.02
RNF4P78317 RNU6-833P-201ENST00000363486 107 ntBASIC2.44□□□□□ -2.02
RNF4P78317 Y_RNA.494-201ENST00000384432 111 ntBASIC2.44□□□□□ -2.02
RNF4P78317 RNU6-296P-201ENST00000384608 107 ntBASIC2.44□□□□□ -2.02
RNF4P78317 MIR144-201ENST00000384886 86 ntBASIC2.44□□□□□ -2.02
RNF4P78317 U8.17-201ENST00000391292 132 ntBASIC2.44□□□□□ -2.02
RNF4P78317 AL590004.2-201ENST00000404787 371 ntBASIC2.44□□□□□ -2.02
RNF4P78317 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.44□□□□□ -2.02
RNF4P78317 COX6CP6-201ENST00000490840 228 ntBASIC2.44□□□□□ -2.02
RNF4P78317 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.44□□□□□ -2.02
RNF4P78317 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.44□□□□□ -2.02
RNF4P78317 AC007012.1-201ENST00000567192 175 ntBASIC2.44□□□□□ -2.02
RNF4P78317 MIR4709-201ENST00000577272 72 ntBASIC2.44□□□□□ -2.02
RNF4P78317 MIR3162-201ENST00000581818 82 ntBASIC2.44□□□□□ -2.02
RNF4P78317 AC021506.2-201ENST00000612354 169 ntBASIC2.44□□□□□ -2.02
RNF4P78317 MIR6895-201ENST00000613497 78 ntBASIC2.44□□□□□ -2.02
RNF4P78317 MIR6852-201ENST00000621699 66 ntBASIC2.44□□□□□ -2.02
RNF4P78317 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.44□□□□□ -2.02
RNF4P78317 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.44□□□□□ -2.02
RNF4P78317 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
RNF4P78317 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.43□□□□□ -2.02
RNF4P78317 SNORA27-201ENST00000384323 126 ntBASIC2.43□□□□□ -2.02
RNF4P78317 Y_RNA.549-201ENST00000384657 102 ntBASIC2.43□□□□□ -2.02
RNF4P78317 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2.43□□□□□ -2.02
RNF4P78317 RNU7-80P-201ENST00000459562 61 ntBASIC2.43□□□□□ -2.02
RNF4P78317 SUMO2P16-201ENST00000519475 264 ntBASIC2.43□□□□□ -2.02
RNF4P78317 MIR4778-201ENST00000577635 80 ntBASIC2.43□□□□□ -2.02
RNF4P78317 DLEU2_5.2-201ENST00000610606 84 ntBASIC2.43□□□□□ -2.02
RNF4P78317 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
RNF4P78317 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
RNF4P78317 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
RNF4P78317 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.42□□□□□ -2.02
RNF4P78317 MIR450A1-201ENST00000362262 91 ntBASIC2.42□□□□□ -2.02
RNF4P78317 AL627390.1-201ENST00000396055 340 ntBASIC2.42□□□□□ -2.02
RNF4P78317 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.42□□□□□ -2.02
RNF4P78317 RNU7-164P-201ENST00000459221 62 ntBASIC2.42□□□□□ -2.02
RNF4P78317 snoU13.27-201ENST00000459278 104 ntBASIC2.42□□□□□ -2.02
RNF4P78317 RNA5SP282-201ENST00000516355 108 ntBASIC2.42□□□□□ -2.02
RNF4P78317 SNORA31.11-201ENST00000516528 139 ntBASIC2.42□□□□□ -2.02
RNF4P78317 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.42□□□□□ -2.02
RNF4P78317 Z82195.2-201ENST00000612348 18351 ntBASIC2.41□□□□□ -2.02
RNF4P78317 Y_RNA.116-201ENST00000363292 103 ntBASIC2.41□□□□□ -2.02
RNF4P78317 MIR524-201ENST00000385242 87 ntBASIC2.41□□□□□ -2.02
RNF4P78317 SNORD12C-201ENST00000386307 89 ntBASIC2.41□□□□□ -2.02
RNF4P78317 RNA5SP450-201ENST00000411206 102 ntBASIC2.41□□□□□ -2.02
RNF4P78317 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC2.41□□□□□ -2.02
RNF4P78317 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.41□□□□□ -2.02
RNF4P78317 SNORA59A-201ENST00000459326 152 ntBASIC2.41□□□□□ -2.02
RNF4P78317 RNU6-830P-201ENST00000516353 107 ntBASIC2.41□□□□□ -2.02
RNF4P78317 RNU7-193P-201ENST00000516723 65 ntBASIC2.41□□□□□ -2.02
RNF4P78317 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.41□□□□□ -2.02
RNF4P78317 AL035470.1-201ENST00000622571 220 ntBASIC2.41□□□□□ -2.02
RNF4P78317 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.41□□□□□ -2.02
RNF4P78317 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.4□□□□□ -2.02
RNF4P78317 Y_RNA.298-201ENST00000364960 107 ntBASIC2.4□□□□□ -2.03
RNF4P78317 RNU1-52P-201ENST00000384190 164 ntBASIC2.4□□□□□ -2.03
RNF4P78317 Y_RNA.454-201ENST00000384224 113 ntBASIC2.4□□□□□ -2.03
RNF4P78317 MIR452-201ENST00000385020 85 ntBASIC2.4□□□□□ -2.03
RNF4P78317 MIR1267-201ENST00000408723 78 ntBASIC2.4□□□□□ -2.03
RNF4P78317 AC099513.1-201ENST00000490423 301 ntBASIC2.4□□□□□ -2.03
RNF4P78317 RNU7-123P-201ENST00000515911 60 ntBASIC2.4□□□□□ -2.03
RNF4P78317 IGLV3-17-201ENST00000519099 244 ntBASIC2.4□□□□□ -2.03
RNF4P78317 AC121758.2-201ENST00000553271 193 ntBASIC2.4□□□□□ -2.03
RNF4P78317 AC022523.2-201ENST00000561045 150 ntBASIC2.4□□□□□ -2.03
RNF4P78317 MIR4672-201ENST00000583126 81 ntBASIC2.4□□□□□ -2.03
RNF4P78317 MIR203B-201ENST00000636080 86 ntBASIC2.4□□□□□ -2.03
RNF4P78317 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.4□□□□□ -2.03
RNF4P78317 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.39□□□□□ -2.03
RNF4P78317 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
RNF4P78317 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
RNF4P78317 RNA5SP68-201ENST00000363885 119 ntBASIC2.39□□□□□ -2.03
RNF4P78317 MT-TI-201ENST00000387365 69 ntBASIC2.39□□□□□ -2.03
RNF4P78317 RPS29P24-201ENST00000486345 171 ntBASIC2.39□□□□□ -2.03
RNF4P78317 RNU6-998P-201ENST00000515894 101 ntBASIC2.39□□□□□ -2.03
RNF4P78317 SNORA31.25-201ENST00000517242 134 ntBASIC2.39□□□□□ -2.03
RNF4P78317 MIR4305-201ENST00000583252 102 ntBASIC2.39□□□□□ -2.03
RNF4P78317 AC078899.2-201ENST00000595282 212 ntBASIC2.39□□□□□ -2.03
RNF4P78317 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.39□□□□□ -2.03
RNF4P78317 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.38□□□□□ -2.03
RNF4P78317 AP000648.3-201ENST00000623539 4507 ntBASIC2.38□□□□□ -2.03
RNF4P78317 SNORD115-34-201ENST00000362441 82 ntBASIC2.38□□□□□ -2.03
RNF4P78317 SNORD115-12-201ENST00000362583 82 ntBASIC2.38□□□□□ -2.03
RNF4P78317 SNORD115-29-201ENST00000362834 82 ntBASIC2.38□□□□□ -2.03
RNF4P78317 SNORD115-9-201ENST00000362912 82 ntBASIC2.38□□□□□ -2.03
RNF4P78317 SNORD115-21-201ENST00000362963 81 ntBASIC2.38□□□□□ -2.03
RNF4P78317 SNORD115-14-201ENST00000363090 81 ntBASIC2.38□□□□□ -2.03
RNF4P78317 SNORD115-13-201ENST00000363358 82 ntBASIC2.38□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 302.5 ms