Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RNU6-922P-201ENST00000516753 99 ntBASIC1.47□□□□□ -2.17
CTCFP49711 SCARNA24.2-201ENST00000516968 130 ntBASIC1.47□□□□□ -2.17
CTCFP49711 AC013791.1-201ENST00000616619 62 ntBASIC1.47□□□□□ -2.17
CTCFP49711 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
CTCFP49711 Y_RNA.237-201ENST00000364439 102 ntBASIC1.46□□□□□ -2.18
CTCFP49711 SNORD50B-201ENST00000364995 70 ntBASIC1.46□□□□□ -2.18
CTCFP49711 Y_RNA.459-201ENST00000384251 102 ntBASIC1.46□□□□□ -2.18
CTCFP49711 RNU6-472P-201ENST00000384299 107 ntBASIC1.46□□□□□ -2.18
CTCFP49711 RNU6-35P-201ENST00000384530 107 ntBASIC1.46□□□□□ -2.18
CTCFP49711 Y_RNA.518-201ENST00000384552 113 ntBASIC1.46□□□□□ -2.18
CTCFP49711 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
CTCFP49711 MIR1278-201ENST00000408753 81 ntBASIC1.46□□□□□ -2.18
CTCFP49711 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.46□□□□□ -2.18
CTCFP49711 NDUFA4P2-201ENST00000489989 244 ntBASIC1.46□□□□□ -2.18
CTCFP49711 AC019288.1-201ENST00000557918 224 ntBASIC1.46□□□□□ -2.18
CTCFP49711 AC211469.2-201ENST00000605461 205 ntBASIC1.46□□□□□ -2.18
CTCFP49711 SNORA25.8-201ENST00000364831 128 ntBASIC1.45□□□□□ -2.18
CTCFP49711 Y_RNA.483-201ENST00000384380 101 ntBASIC1.45□□□□□ -2.18
CTCFP49711 MTND2P23-201ENST00000422990 651 ntBASIC1.45□□□□□ -2.18
CTCFP49711 BTF3P11-201ENST00000426582 477 ntBASIC1.45□□□□□ -2.18
CTCFP49711 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.45□□□□□ -2.18
CTCFP49711 RNU6-165P-201ENST00000517170 99 ntBASIC1.45□□□□□ -2.18
CTCFP49711 AC008269.2-201ENST00000561915 1105 ntBASIC1.45□□□□□ -2.18
CTCFP49711 CYP3A52P-201ENST00000563326 91 ntBASIC1.45□□□□□ -2.18
CTCFP49711 AL008718.3-201ENST00000610217 321 ntBASIC1.45□□□□□ -2.18
CTCFP49711 RNU6-1205P-201ENST00000363625 106 ntBASIC1.44□□□□□ -2.18
CTCFP49711 Y_RNA.176-201ENST00000363815 109 ntBASIC1.44□□□□□ -2.18
CTCFP49711 Y_RNA.275-201ENST00000364726 110 ntBASIC1.44□□□□□ -2.18
CTCFP49711 snoU2-30.1-201ENST00000365012 70 ntBASIC1.44□□□□□ -2.18
CTCFP49711 RNU6-144P-201ENST00000383951 107 ntBASIC1.44□□□□□ -2.18
CTCFP49711 Y_RNA.461-201ENST00000384263 103 ntBASIC1.44□□□□□ -2.18
CTCFP49711 MIR1298-201ENST00000408783 112 ntBASIC1.44□□□□□ -2.18
CTCFP49711 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.44□□□□□ -2.18
CTCFP49711 RNU6-327P-201ENST00000516270 127 ntBASIC1.44□□□□□ -2.18
CTCFP49711 CYP3A137P-201ENST00000562436 69 ntBASIC1.44□□□□□ -2.18
CTCFP49711 MIR5692C2-201ENST00000577959 77 ntBASIC1.44□□□□□ -2.18
CTCFP49711 MIR2681-201ENST00000581814 105 ntBASIC1.44□□□□□ -2.18
CTCFP49711 JPX_2.1-201ENST00000614161 69 ntBASIC1.44□□□□□ -2.18
CTCFP49711 snoU18.1-201ENST00000629629 71 ntBASIC1.44□□□□□ -2.18
CTCFP49711 AC099654.10-201ENST00000640395 161 ntBASIC1.44□□□□□ -2.18
CTCFP49711 MIR335-201ENST00000362173 94 ntBASIC1.43□□□□□ -2.18
CTCFP49711 RNU6-1084P-201ENST00000362498 107 ntBASIC1.43□□□□□ -2.18
CTCFP49711 MIR452-201ENST00000385020 85 ntBASIC1.43□□□□□ -2.18
CTCFP49711 AL451046.2-201ENST00000403074 277 ntBASIC1.43□□□□□ -2.18
CTCFP49711 SNORD11-201ENST00000459124 84 ntBASIC1.43□□□□□ -2.18
CTCFP49711 RNU6-322P-201ENST00000516010 103 ntBASIC1.43□□□□□ -2.18
CTCFP49711 Y_RNA.714-201ENST00000517065 90 ntBASIC1.43□□□□□ -2.18
CTCFP49711 RPL23AP91-201ENST00000569211 455 ntBASIC1.43□□□□□ -2.18
CTCFP49711 AC087685.1-201ENST00000587507 141 ntBASIC1.43□□□□□ -2.18
CTCFP49711 AC096720.1-201ENST00000604441 183 ntBASIC1.43□□□□□ -2.18
CTCFP49711 GHRLOS.1-201ENST00000610995 70 ntBASIC1.43□□□□□ -2.18
CTCFP49711 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.43□□□□□ -2.18
CTCFP49711 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.43□□□□□ -2.18
CTCFP49711 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.42□□□□□ -2.18
CTCFP49711 Y_RNA.47-201ENST00000362697 108 ntBASIC1.42□□□□□ -2.18
CTCFP49711 RNU6-1309P-201ENST00000363305 108 ntBASIC1.42□□□□□ -2.18
CTCFP49711 Y_RNA.162-201ENST00000363683 102 ntBASIC1.42□□□□□ -2.18
CTCFP49711 Y_RNA.258-201ENST00000364613 105 ntBASIC1.42□□□□□ -2.18
CTCFP49711 Y_RNA.336-201ENST00000365307 109 ntBASIC1.42□□□□□ -2.18
CTCFP49711 Y_RNA.396-201ENST00000383949 103 ntBASIC1.42□□□□□ -2.18
CTCFP49711 RNU6-939P-201ENST00000384634 107 ntBASIC1.42□□□□□ -2.18
CTCFP49711 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
CTCFP49711 MIR1302-6-201ENST00000408466 90 ntBASIC1.42□□□□□ -2.18
CTCFP49711 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.42□□□□□ -2.18
CTCFP49711 HMGN2P32-201ENST00000444648 269 ntBASIC1.42□□□□□ -2.18
CTCFP49711 RN7SKP88-201ENST00000516847 250 ntBASIC1.42□□□□□ -2.18
CTCFP49711 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.42□□□□□ -2.18
CTCFP49711 7SK.8-201ENST00000612110 250 ntBASIC1.42□□□□□ -2.18
CTCFP49711 7SK.11-201ENST00000615477 250 ntBASIC1.42□□□□□ -2.18
CTCFP49711 U2.14-201ENST00000615943 113 ntBASIC1.42□□□□□ -2.18
CTCFP49711 7SK.13-201ENST00000622040 250 ntBASIC1.42□□□□□ -2.18
CTCFP49711 AL442644.1-201ENST00000454390 3105 ntBASIC1.41□□□□□ -2.18
CTCFP49711 Y_RNA.44-201ENST00000362676 108 ntBASIC1.41□□□□□ -2.18
CTCFP49711 Y_RNA.133-201ENST00000363428 110 ntBASIC1.41□□□□□ -2.18
CTCFP49711 Y_RNA.149-201ENST00000363558 117 ntBASIC1.41□□□□□ -2.18
CTCFP49711 RNU6-1289P-201ENST00000384431 106 ntBASIC1.41□□□□□ -2.18
CTCFP49711 RNU6-383P-201ENST00000410864 94 ntBASIC1.41□□□□□ -2.18
CTCFP49711 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.41□□□□□ -2.18
CTCFP49711 AC090142.3-201ENST00000519012 385 ntBASIC1.41□□□□□ -2.18
CTCFP49711 AC008507.4-201ENST00000585464 127 ntBASIC1.41□□□□□ -2.18
CTCFP49711 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.4□□□□□ -2.18
CTCFP49711 Y_RNA.117-201ENST00000363294 101 ntBASIC1.4□□□□□ -2.19
CTCFP49711 MIR618-201ENST00000385287 98 ntBASIC1.4□□□□□ -2.19
CTCFP49711 RNA5SP127-201ENST00000411051 133 ntBASIC1.4□□□□□ -2.19
CTCFP49711 AC098934.3-201ENST00000430450 190 ntBASIC1.4□□□□□ -2.19
CTCFP49711 MTCO2P24-201ENST00000515611 426 ntBASIC1.4□□□□□ -2.19
CTCFP49711 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.4□□□□□ -2.19
CTCFP49711 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC1.4□□□□□ -2.19
CTCFP49711 AL021707.8-201ENST00000609428 183 ntBASIC1.4□□□□□ -2.19
CTCFP49711 U6.104-201ENST00000637979 90 ntBASIC1.4□□□□□ -2.19
CTCFP49711 MIR373-201ENST00000362273 69 ntBASIC1.39□□□□□ -2.19
CTCFP49711 SNORD14E-201ENST00000364009 85 ntBASIC1.39□□□□□ -2.19
CTCFP49711 RNU6-740P-201ENST00000364734 105 ntBASIC1.39□□□□□ -2.19
CTCFP49711 RNU6-211P-201ENST00000384047 107 ntBASIC1.39□□□□□ -2.19
CTCFP49711 MIR516B2-201ENST00000385190 85 ntBASIC1.39□□□□□ -2.19
CTCFP49711 MIR758-201ENST00000390227 88 ntBASIC1.39□□□□□ -2.19
CTCFP49711 SNRPGP14-201ENST00000435400 219 ntBASIC1.39□□□□□ -2.19
CTCFP49711 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.39□□□□□ -2.19
CTCFP49711 RNU6-1045P-201ENST00000516321 107 ntBASIC1.39□□□□□ -2.19
CTCFP49711 AL353621.2-201ENST00000605340 133 ntBASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms