Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 SNORA31.11-201ENST00000516528 139 ntBASIC2.43□□□□□ -2.02
SOX9P48436 RNA5SP402-201ENST00000517148 110 ntBASIC2.43□□□□□ -2.02
SOX9P48436 Y_RNA.757-201ENST00000578934 114 ntBASIC2.43□□□□□ -2.02
SOX9P48436 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.43□□□□□ -2.02
SOX9P48436 AP001340.1-201ENST00000624405 217 ntBASIC2.43□□□□□ -2.02
SOX9P48436 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.43□□□□□ -2.02
SOX9P48436 MIR6073-201ENST00000352083 89 ntBASIC2.42□□□□□ -2.02
SOX9P48436 MIR548A2-201ENST00000384956 97 ntBASIC2.42□□□□□ -2.02
SOX9P48436 AC244636.1-201ENST00000421152 228 ntBASIC2.42□□□□□ -2.02
SOX9P48436 AC093850.1-201ENST00000454121 251 ntBASIC2.42□□□□□ -2.02
SOX9P48436 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.42□□□□□ -2.02
SOX9P48436 Y_RNA.676-201ENST00000516393 96 ntBASIC2.42□□□□□ -2.02
SOX9P48436 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.42□□□□□ -2.02
SOX9P48436 DEFB122-202ENST00000569013 197 ntBASIC2.42□□□□□ -2.02
SOX9P48436 MIR4778-201ENST00000577635 80 ntBASIC2.42□□□□□ -2.02
SOX9P48436 U7.2-201ENST00000607576 63 ntBASIC2.42□□□□□ -2.02
SOX9P48436 AL137847.3-201ENST00000611521 109 ntBASIC2.42□□□□□ -2.02
SOX9P48436 AL773524.1-201ENST00000614065 229 ntBASIC2.42□□□□□ -2.02
SOX9P48436 MIR6873-201ENST00000622788 63 ntBASIC2.42□□□□□ -2.02
SOX9P48436 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
SOX9P48436 Y_RNA.120-201ENST00000363304 110 ntBASIC2.41□□□□□ -2.02
SOX9P48436 SNORA16B-201ENST00000364674 135 ntBASIC2.41□□□□□ -2.02
SOX9P48436 RNU6-1189P-201ENST00000383958 107 ntBASIC2.41□□□□□ -2.02
SOX9P48436 AF228730.3-201ENST00000436691 102 ntBASIC2.41□□□□□ -2.02
SOX9P48436 AC087499.4-201ENST00000448505 178 ntBASIC2.41□□□□□ -2.02
SOX9P48436 AC099513.1-201ENST00000490423 301 ntBASIC2.41□□□□□ -2.02
SOX9P48436 AC015712.3-201ENST00000559380 164 ntBASIC2.41□□□□□ -2.02
SOX9P48436 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
SOX9P48436 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.4□□□□□ -2.02
SOX9P48436 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.4□□□□□ -2.02
SOX9P48436 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.4□□□□□ -2.03
SOX9P48436 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
SOX9P48436 RNU6-1123P-201ENST00000362347 106 ntBASIC2.4□□□□□ -2.03
SOX9P48436 SNORA6-201ENST00000384033 151 ntBASIC2.4□□□□□ -2.03
SOX9P48436 RNU6-1117P-201ENST00000384525 104 ntBASIC2.4□□□□□ -2.03
SOX9P48436 MIR136-201ENST00000385207 82 ntBASIC2.4□□□□□ -2.03
SOX9P48436 SNORD77.3-201ENST00000391113 65 ntBASIC2.4□□□□□ -2.03
SOX9P48436 RNU6-1211P-201ENST00000459179 105 ntBASIC2.4□□□□□ -2.03
SOX9P48436 Y_RNA.692-201ENST00000516627 105 ntBASIC2.4□□□□□ -2.03
SOX9P48436 RNA5SP82-201ENST00000516707 92 ntBASIC2.4□□□□□ -2.03
SOX9P48436 MIR5092-201ENST00000583139 88 ntBASIC2.4□□□□□ -2.03
SOX9P48436 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.4□□□□□ -2.03
SOX9P48436 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.4□□□□□ -2.03
SOX9P48436 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.39□□□□□ -2.03
SOX9P48436 Y_RNA.37-201ENST00000362606 108 ntBASIC2.39□□□□□ -2.03
SOX9P48436 SNORD114-1-201ENST00000362705 72 ntBASIC2.39□□□□□ -2.03
SOX9P48436 Y_RNA.52-201ENST00000362760 96 ntBASIC2.39□□□□□ -2.03
SOX9P48436 RNA5SP99-201ENST00000364020 114 ntBASIC2.39□□□□□ -2.03
SOX9P48436 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
SOX9P48436 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC2.39□□□□□ -2.03
SOX9P48436 AC108210.2-201ENST00000503681 201 ntBASIC2.39□□□□□ -2.03
SOX9P48436 RNU7-70P-201ENST00000516941 66 ntBASIC2.39□□□□□ -2.03
SOX9P48436 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC2.39□□□□□ -2.03
SOX9P48436 AP000648.3-201ENST00000623539 4507 ntBASIC2.38□□□□□ -2.03
SOX9P48436 U8.1-201ENST00000362843 134 ntBASIC2.38□□□□□ -2.03
SOX9P48436 RNY1P11-201ENST00000363759 113 ntBASIC2.38□□□□□ -2.03
SOX9P48436 RNU6-959P-201ENST00000384671 107 ntBASIC2.38□□□□□ -2.03
SOX9P48436 MIR516B2-201ENST00000385190 85 ntBASIC2.38□□□□□ -2.03
SOX9P48436 RNU6-482P-201ENST00000391068 107 ntBASIC2.38□□□□□ -2.03
SOX9P48436 RNU5E-3P-201ENST00000515913 68 ntBASIC2.38□□□□□ -2.03
SOX9P48436 RNU6-830P-201ENST00000516353 107 ntBASIC2.38□□□□□ -2.03
SOX9P48436 RNU6-62P-201ENST00000516526 102 ntBASIC2.38□□□□□ -2.03
SOX9P48436 SNORA18.7-201ENST00000516910 131 ntBASIC2.38□□□□□ -2.03
SOX9P48436 MIR5197-201ENST00000583721 112 ntBASIC2.38□□□□□ -2.03
SOX9P48436 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.38□□□□□ -2.03
SOX9P48436 AC016717.2-201ENST00000609089 5141 ntBASIC2.38□□□□□ -2.03
SOX9P48436 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.37□□□□□ -2.03
SOX9P48436 SNORA2.2-201ENST00000365473 135 ntBASIC2.37□□□□□ -2.03
SOX9P48436 SNORA64-201ENST00000384674 134 ntBASIC2.37□□□□□ -2.03
SOX9P48436 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.37□□□□□ -2.03
SOX9P48436 RPS12P2-201ENST00000439728 269 ntBASIC2.37□□□□□ -2.03
SOX9P48436 Y_RNA.690-201ENST00000516603 95 ntBASIC2.37□□□□□ -2.03
SOX9P48436 RNU6-971P-201ENST00000516920 106 ntBASIC2.37□□□□□ -2.03
SOX9P48436 AP003484.1-201ENST00000530974 250 ntBASIC2.37□□□□□ -2.03
SOX9P48436 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.36□□□□□ -2.03
SOX9P48436 SNORA67.3-201ENST00000384366 140 ntBASIC2.36□□□□□ -2.03
SOX9P48436 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC2.36□□□□□ -2.03
SOX9P48436 AC080100.1-201ENST00000624239 5356 ntBASIC2.36□□□□□ -2.03
SOX9P48436 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.35□□□□□ -2.03
SOX9P48436 RNU6-661P-201ENST00000362409 107 ntBASIC2.35□□□□□ -2.03
SOX9P48436 SNORA1.2-201ENST00000365189 134 ntBASIC2.35□□□□□ -2.03
SOX9P48436 SNORD113-1-201ENST00000365321 69 ntBASIC2.35□□□□□ -2.03
SOX9P48436 MIR17-201ENST00000385012 84 ntBASIC2.35□□□□□ -2.03
SOX9P48436 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
SOX9P48436 AL603914.1-201ENST00000401964 204 ntBASIC2.35□□□□□ -2.03
SOX9P48436 MIR1267-201ENST00000408723 78 ntBASIC2.35□□□□□ -2.03
SOX9P48436 JTBP1-201ENST00000441314 247 ntBASIC2.35□□□□□ -2.03
SOX9P48436 AC107297.1-201ENST00000459991 176 ntBASIC2.35□□□□□ -2.03
SOX9P48436 Y_RNA.686-201ENST00000516548 134 ntBASIC2.35□□□□□ -2.03
SOX9P48436 RNU6-1149P-201ENST00000516810 97 ntBASIC2.35□□□□□ -2.03
SOX9P48436 MIR4713-201ENST00000582691 75 ntBASIC2.35□□□□□ -2.03
SOX9P48436 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
SOX9P48436 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
SOX9P48436 MTND5P32-201ENST00000560711 1802 ntBASIC2.35□□□□□ -2.03
SOX9P48436 Y_RNA.241-201ENST00000364470 117 ntBASIC2.34□□□□□ -2.03
SOX9P48436 RNU6-1081P-201ENST00000384537 107 ntBASIC2.34□□□□□ -2.03
SOX9P48436 AC004965.1-201ENST00000413033 213 ntBASIC2.34□□□□□ -2.03
SOX9P48436 SNORD36C-201ENST00000516733 66 ntBASIC2.34□□□□□ -2.03
SOX9P48436 SUMO2P16-201ENST00000519475 264 ntBASIC2.34□□□□□ -2.03
SOX9P48436 MIR4299-201ENST00000577899 72 ntBASIC2.34□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 171.2 ms