Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RNU6-1237P-201ENST00000384777 107 ntBASIC0.41□□□□□ -2.34
RFX3P48380 RNA5SP222-201ENST00000411039 105 ntBASIC0.41□□□□□ -2.34
RFX3P48380 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.41□□□□□ -2.34
RFX3P48380 SEPT14P8-201ENST00000508026 178 ntBASIC0.41□□□□□ -2.34
RFX3P48380 RNU6-976P-201ENST00000516086 111 ntBASIC0.41□□□□□ -2.34
RFX3P48380 RNU4-77P-201ENST00000516692 156 ntBASIC0.41□□□□□ -2.34
RFX3P48380 RPL23AP91-201ENST00000569211 455 ntBASIC0.41□□□□□ -2.34
RFX3P48380 MIR4791-201ENST00000607666 84 ntBASIC0.41□□□□□ -2.34
RFX3P48380 AC122108.2-201ENST00000611946 526 ntBASIC0.41□□□□□ -2.34
RFX3P48380 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.41□□□□□ -2.34
RFX3P48380 Y_RNA.205-201ENST00000364128 113 ntBASIC0.4□□□□□ -2.35
RFX3P48380 RNU4-50P-201ENST00000364361 141 ntBASIC0.4□□□□□ -2.35
RFX3P48380 Y_RNA.496-201ENST00000384444 101 ntBASIC0.4□□□□□ -2.35
RFX3P48380 AC236972.2-201ENST00000434979 310 ntBASIC0.4□□□□□ -2.35
RFX3P48380 POLR2KP2-201ENST00000438155 177 ntBASIC0.4□□□□□ -2.35
RFX3P48380 SNORD11-201ENST00000459124 84 ntBASIC0.4□□□□□ -2.35
RFX3P48380 Y_RNA.632-201ENST00000459189 102 ntBASIC0.4□□□□□ -2.35
RFX3P48380 RNU7-141P-201ENST00000459304 62 ntBASIC0.4□□□□□ -2.35
RFX3P48380 SNORD19B-201ENST00000459623 84 ntBASIC0.4□□□□□ -2.35
RFX3P48380 AP000753.3-201ENST00000604083 169 ntBASIC0.4□□□□□ -2.35
RFX3P48380 SNORD113-5-201ENST00000607261 78 ntBASIC0.4□□□□□ -2.35
RFX3P48380 AC243829.6-201ENST00000612652 106 ntBASIC0.4□□□□□ -2.35
RFX3P48380 RNU4-45P-201ENST00000365469 141 ntBASIC0.39□□□□□ -2.35
RFX3P48380 VTRNA1-3-201ENST00000365645 89 ntBASIC0.39□□□□□ -2.35
RFX3P48380 Y_RNA.383-201ENST00000383855 97 ntBASIC0.39□□□□□ -2.35
RFX3P48380 SNORA72.4-201ENST00000384174 132 ntBASIC0.39□□□□□ -2.35
RFX3P48380 RNA5SP95-201ENST00000410319 137 ntBASIC0.39□□□□□ -2.35
RFX3P48380 AC023449.1-201ENST00000454464 154 ntBASIC0.39□□□□□ -2.35
RFX3P48380 RNU2-13P-201ENST00000515909 113 ntBASIC0.39□□□□□ -2.35
RFX3P48380 RNU4-57P-201ENST00000515980 135 ntBASIC0.39□□□□□ -2.35
RFX3P48380 RNU6-475P-201ENST00000516073 104 ntBASIC0.39□□□□□ -2.35
RFX3P48380 RN7SKP12-201ENST00000516275 143 ntBASIC0.39□□□□□ -2.35
RFX3P48380 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.39□□□□□ -2.35
RFX3P48380 MIR548AO-201ENST00000579992 96 ntBASIC0.39□□□□□ -2.35
RFX3P48380 AC012433.1-201ENST00000588916 398 ntBASIC0.39□□□□□ -2.35
RFX3P48380 AC015726.2-201ENST00000620112 122 ntBASIC0.39□□□□□ -2.35
RFX3P48380 MTND1P7-201ENST00000632801 297 ntBASIC0.39□□□□□ -2.35
RFX3P48380 MIR924-201ENST00000638017 53 ntBASIC0.39□□□□□ -2.35
RFX3P48380 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.38□□□□□ -2.35
RFX3P48380 RNU6-144P-201ENST00000383951 107 ntBASIC0.38□□□□□ -2.35
RFX3P48380 SNORA36.2-201ENST00000384004 127 ntBASIC0.38□□□□□ -2.35
RFX3P48380 RNU6-937P-201ENST00000384325 106 ntBASIC0.38□□□□□ -2.35
RFX3P48380 MIR570-201ENST00000384917 97 ntBASIC0.38□□□□□ -2.35
RFX3P48380 AL603910.2-201ENST00000407268 136 ntBASIC0.38□□□□□ -2.35
RFX3P48380 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.38□□□□□ -2.35
RFX3P48380 RNU4-30P-201ENST00000410245 143 ntBASIC0.38□□□□□ -2.35
RFX3P48380 RNU6-177P-201ENST00000411257 104 ntBASIC0.38□□□□□ -2.35
RFX3P48380 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC0.38□□□□□ -2.35
RFX3P48380 AC107297.1-201ENST00000459991 176 ntBASIC0.38□□□□□ -2.35
RFX3P48380 Y_RNA.661-201ENST00000516003 99 ntBASIC0.38□□□□□ -2.35
RFX3P48380 RNU7-181P-201ENST00000517234 74 ntBASIC0.38□□□□□ -2.35
RFX3P48380 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.38□□□□□ -2.35
RFX3P48380 MIR3145-201ENST00000580727 82 ntBASIC0.38□□□□□ -2.35
RFX3P48380 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.38□□□□□ -2.35
RFX3P48380 MIR4264-201ENST00000583520 66 ntBASIC0.38□□□□□ -2.35
RFX3P48380 AC005357.1-201ENST00000588399 301 ntBASIC0.38□□□□□ -2.35
RFX3P48380 uc_338.4-201ENST00000616635 176 ntBASIC0.38□□□□□ -2.35
RFX3P48380 RNU6-899P-201ENST00000363947 107 ntBASIC0.37□□□□□ -2.35
RFX3P48380 RNU6-801P-201ENST00000364087 105 ntBASIC0.37□□□□□ -2.35
RFX3P48380 Y_RNA.471-201ENST00000384312 102 ntBASIC0.37□□□□□ -2.35
RFX3P48380 MIR573-201ENST00000384964 99 ntBASIC0.37□□□□□ -2.35
RFX3P48380 SNORD72-201ENST00000390994 80 ntBASIC0.37□□□□□ -2.35
RFX3P48380 AC244023.1-201ENST00000426884 112 ntBASIC0.37□□□□□ -2.35
RFX3P48380 MTCO2P12-201ENST00000427426 682 ntBASIC0.37□□□□□ -2.35
RFX3P48380 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.37□□□□□ -2.35
RFX3P48380 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC0.37□□□□□ -2.35
RFX3P48380 AC242498.1-201ENST00000604134 111 ntBASIC0.37□□□□□ -2.35
RFX3P48380 SNORD58B-201ENST00000607313 66 ntBASIC0.37□□□□□ -2.35
RFX3P48380 AC243994.1-201ENST00000618627 109 ntBASIC0.37□□□□□ -2.35
RFX3P48380 Y_RNA.5-201ENST00000362334 102 ntBASIC0.36□□□□□ -2.35
RFX3P48380 RNU4-80P-201ENST00000363200 141 ntBASIC0.36□□□□□ -2.35
RFX3P48380 SNORA72.1-201ENST00000363485 129 ntBASIC0.36□□□□□ -2.35
RFX3P48380 Y_RNA.143-201ENST00000363520 106 ntBASIC0.36□□□□□ -2.35
RFX3P48380 Y_RNA.390-201ENST00000383932 102 ntBASIC0.36□□□□□ -2.35
RFX3P48380 MTND1P14-201ENST00000427400 950 ntBASIC0.36□□□□□ -2.35
RFX3P48380 snoU13.16-201ENST00000459350 104 ntBASIC0.36□□□□□ -2.35
RFX3P48380 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.36□□□□□ -2.35
RFX3P48380 AC104985.2-201ENST00000620598 500 ntBASIC0.36□□□□□ -2.35
RFX3P48380 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.36□□□□□ -2.35
RFX3P48380 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.36□□□□□ -2.35
RFX3P48380 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.35□□□□□ -2.35
RFX3P48380 MIR330-201ENST00000362196 94 ntBASIC0.35□□□□□ -2.35
RFX3P48380 RNU6-369P-201ENST00000362515 102 ntBASIC0.35□□□□□ -2.35
RFX3P48380 RNA5SP457-201ENST00000363657 124 ntBASIC0.35□□□□□ -2.35
RFX3P48380 Y_RNA.222-201ENST00000364264 102 ntBASIC0.35□□□□□ -2.35
RFX3P48380 RNU6-934P-201ENST00000365154 107 ntBASIC0.35□□□□□ -2.35
RFX3P48380 SNORA24-201ENST00000384096 131 ntBASIC0.35□□□□□ -2.35
RFX3P48380 MIR140-201ENST00000385282 100 ntBASIC0.35□□□□□ -2.35
RFX3P48380 MIR1278-201ENST00000408753 81 ntBASIC0.35□□□□□ -2.35
RFX3P48380 RNU2-14P-201ENST00000411053 191 ntBASIC0.35□□□□□ -2.35
RFX3P48380 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.35□□□□□ -2.35
RFX3P48380 SNORA68.3-201ENST00000515906 83 ntBASIC0.35□□□□□ -2.35
RFX3P48380 AL355297.3-201ENST00000604082 446 ntBASIC0.35□□□□□ -2.35
RFX3P48380 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.34□□□□□ -2.35
RFX3P48380 SNORD45.3-201ENST00000363836 72 ntBASIC0.34□□□□□ -2.36
RFX3P48380 SNORA63C-201ENST00000364578 129 ntBASIC0.34□□□□□ -2.36
RFX3P48380 RNU6-1283P-201ENST00000365314 105 ntBASIC0.34□□□□□ -2.36
RFX3P48380 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.34□□□□□ -2.36
RFX3P48380 RNU6-1170P-201ENST00000515974 106 ntBASIC0.34□□□□□ -2.36
RFX3P48380 RNU6-977P-201ENST00000516411 103 ntBASIC0.34□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 126.4 ms