Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC-1.65□□□□□ -2.67
CUX1P39880 RNU6-757P-201ENST00000410334 100 ntBASIC-1.65□□□□□ -2.67
CUX1P39880 AC116353.3-201ENST00000511215 249 ntBASIC-1.65□□□□□ -2.67
CUX1P39880 MIR4775-201ENST00000581168 75 ntBASIC-1.65□□□□□ -2.67
CUX1P39880 MIR4520-1-201ENST00000582609 70 ntBASIC-1.65□□□□□ -2.67
CUX1P39880 Y_RNA.114-201ENST00000363265 113 ntBASIC-1.66□□□□□ -2.67
CUX1P39880 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.66□□□□□ -2.67
CUX1P39880 SNORD73A-201ENST00000386062 65 ntBASIC-1.66□□□□□ -2.67
CUX1P39880 MIR889-201ENST00000401280 79 ntBASIC-1.66□□□□□ -2.67
CUX1P39880 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC-1.66□□□□□ -2.67
CUX1P39880 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC-1.66□□□□□ -2.67
CUX1P39880 USP9YP30-201ENST00000430729 455 ntBASIC-1.66□□□□□ -2.67
CUX1P39880 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC-1.66□□□□□ -2.67
CUX1P39880 RPL30P15-201ENST00000457129 321 ntBASIC-1.66□□□□□ -2.67
CUX1P39880 DEFB131E-201ENST00000532329 154 ntBASIC-1.66□□□□□ -2.67
CUX1P39880 MIR8068-201ENST00000618032 68 ntBASIC-1.66□□□□□ -2.67
CUX1P39880 RNU6-1036P-201ENST00000383959 104 ntBASIC-1.66□□□□□ -2.68
CUX1P39880 RNU6-159P-201ENST00000391080 106 ntBASIC-1.66□□□□□ -2.68
CUX1P39880 RNA5SP484-201ENST00000458857 111 ntBASIC-1.66□□□□□ -2.68
CUX1P39880 MTATP6P15-201ENST00000527233 835 ntBASIC-1.66□□□□□ -2.68
CUX1P39880 AL512506.1-201ENST00000613918 449 ntBASIC-1.66□□□□□ -2.68
CUX1P39880 Y_RNA.263-201ENST00000364659 114 ntBASIC-1.67□□□□□ -2.68
CUX1P39880 Y_RNA.399-201ENST00000383955 105 ntBASIC-1.67□□□□□ -2.68
CUX1P39880 SNORA72.6-201ENST00000384520 129 ntBASIC-1.67□□□□□ -2.68
CUX1P39880 RNU6-1127P-201ENST00000384580 107 ntBASIC-1.67□□□□□ -2.68
CUX1P39880 AC096949.1-201ENST00000412047 152 ntBASIC-1.67□□□□□ -2.68
CUX1P39880 RNU7-55P-201ENST00000459426 62 ntBASIC-1.67□□□□□ -2.68
CUX1P39880 RNU6-1337P-201ENST00000516525 95 ntBASIC-1.67□□□□□ -2.68
CUX1P39880 MIR5704-201ENST00000584029 77 ntBASIC-1.67□□□□□ -2.68
CUX1P39880 AC080013.3-201ENST00000606839 578 ntBASIC-1.67□□□□□ -2.68
CUX1P39880 AP001282.2-201ENST00000616149 309 ntBASIC-1.67□□□□□ -2.68
CUX1P39880 AC072046.2-201ENST00000618366 268 ntBASIC-1.67□□□□□ -2.68
CUX1P39880 SNORA63.5-201ENST00000363548 123 ntBASIC-1.68□□□□□ -2.68
CUX1P39880 RNA5SP403-201ENST00000363598 108 ntBASIC-1.68□□□□□ -2.68
CUX1P39880 SNORD115-32-201ENST00000364079 82 ntBASIC-1.68□□□□□ -2.68
CUX1P39880 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.68□□□□□ -2.68
CUX1P39880 Y_RNA.243-201ENST00000364481 109 ntBASIC-1.68□□□□□ -2.68
CUX1P39880 Y_RNA.319-201ENST00000365138 92 ntBASIC-1.68□□□□□ -2.68
CUX1P39880 RNU2-29P-201ENST00000410423 189 ntBASIC-1.68□□□□□ -2.68
CUX1P39880 Y_RNA.637-201ENST00000459424 114 ntBASIC-1.68□□□□□ -2.68
CUX1P39880 RNU6-1194P-201ENST00000516208 104 ntBASIC-1.68□□□□□ -2.68
CUX1P39880 AP003181.2-201ENST00000528941 181 ntBASIC-1.68□□□□□ -2.68
CUX1P39880 AP003733.2-201ENST00000529409 171 ntBASIC-1.68□□□□□ -2.68
CUX1P39880 OSBPL9P5-201ENST00000542581 171 ntBASIC-1.68□□□□□ -2.68
CUX1P39880 AC011373.1-201ENST00000607270 237 ntBASIC-1.68□□□□□ -2.68
CUX1P39880 AC109347.2-201ENST00000610220 349 ntBASIC-1.68□□□□□ -2.68
CUX1P39880 Y_RNA.151-201ENST00000363566 112 ntBASIC-1.69□□□□□ -2.68
CUX1P39880 MIR539-201ENST00000365690 78 ntBASIC-1.69□□□□□ -2.68
CUX1P39880 RNU6-540P-201ENST00000384622 101 ntBASIC-1.69□□□□□ -2.68
CUX1P39880 SERF1AP1-201ENST00000514575 187 ntBASIC-1.69□□□□□ -2.68
CUX1P39880 SNORA25.16-201ENST00000516741 121 ntBASIC-1.69□□□□□ -2.68
CUX1P39880 UBL5P4-201ENST00000562584 236 ntBASIC-1.69□□□□□ -2.68
CUX1P39880 AC245014.2-201ENST00000603689 287 ntBASIC-1.69□□□□□ -2.68
CUX1P39880 AC005972.2-201ENST00000604690 348 ntBASIC-1.69□□□□□ -2.68
CUX1P39880 TUSC7.1-201ENST00000610969 165 ntBASIC-1.69□□□□□ -2.68
CUX1P39880 AC099654.12-201ENST00000639868 649 ntBASIC-1.69□□□□□ -2.68
CUX1P39880 SNORA20.2-201ENST00000383922 131 ntBASIC-1.7□□□□□ -2.68
CUX1P39880 MIR527-201ENST00000385244 85 ntBASIC-1.7□□□□□ -2.68
CUX1P39880 MTND3P8-201ENST00000412909 339 ntBASIC-1.7□□□□□ -2.68
CUX1P39880 RPL30P16-201ENST00000419341 429 ntBASIC-1.7□□□□□ -2.68
CUX1P39880 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC-1.7□□□□□ -2.68
CUX1P39880 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC-1.7□□□□□ -2.68
CUX1P39880 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC-1.7□□□□□ -2.68
CUX1P39880 RNU7-104P-201ENST00000459398 79 ntBASIC-1.7□□□□□ -2.68
CUX1P39880 RNU7-138P-201ENST00000459479 64 ntBASIC-1.7□□□□□ -2.68
CUX1P39880 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC-1.7□□□□□ -2.68
CUX1P39880 RPL30P10-201ENST00000488148 337 ntBASIC-1.7□□□□□ -2.68
CUX1P39880 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC-1.7□□□□□ -2.68
CUX1P39880 CPDP1-201ENST00000579660 283 ntBASIC-1.7□□□□□ -2.68
CUX1P39880 POLR3GP2-201ENST00000588366 668 ntBASIC-1.7□□□□□ -2.68
CUX1P39880 RNU6-1062P-201ENST00000383908 107 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 RNU6-880P-201ENST00000384526 107 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 AC112204.1-201ENST00000502591 103 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC-1.71□□□□□ -2.68
CUX1P39880 SCOCP1-201ENST00000554676 349 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 AC064836.2-201ENST00000609491 462 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 AL662814.1-201ENST00000617364 121 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 SNORD115-34-201ENST00000362441 82 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 SNORD115-12-201ENST00000362583 82 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 SNORD115-29-201ENST00000362834 82 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 SNORD115-9-201ENST00000362912 82 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 SNORD115-21-201ENST00000362963 81 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 SNORD115-14-201ENST00000363090 81 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 SNORD115-13-201ENST00000363358 82 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 SNORD115-11-201ENST00000363616 82 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 SNORD115-5-201ENST00000363633 82 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 SNORD115-39-201ENST00000363694 82 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 SNORD115-4-201ENST00000363810 82 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 SNORD115-16-201ENST00000363887 82 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 SNORD115-6-201ENST00000363942 82 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 RNU1-141P-201ENST00000364623 158 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 SNORD115-15-201ENST00000364809 81 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 SNORD115-1-201ENST00000364961 82 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 SNORD115-26-201ENST00000365067 82 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 SNORD115-10-201ENST00000365073 81 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 RNU6-169P-201ENST00000365336 107 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 SNORD115-43-201ENST00000365503 82 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 SNORD115-36-201ENST00000365629 82 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 SNORD24-201ENST00000383884 75 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 RNU6-905P-201ENST00000384434 107 ntBASIC-1.71□□□□□ -2.68
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms