Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 AC093027.1-201ENST00000546698 429 ntBASIC0.52□□□□□ -2.33
SCN1AP35498 MIR4264-201ENST00000583520 66 ntBASIC0.52□□□□□ -2.33
SCN1AP35498 MIR548AY-201ENST00000617669 107 ntBASIC0.52□□□□□ -2.33
SCN1AP35498 AC090574.1-201ENST00000623186 233 ntBASIC0.52□□□□□ -2.33
SCN1AP35498 MIR4251-201ENST00000635819 61 ntBASIC0.52□□□□□ -2.33
SCN1AP35498 Y_RNA.579-201ENST00000390939 94 ntBASIC0.52□□□□□ -2.33
SCN1AP35498 RNU6-1248P-201ENST00000391096 64 ntBASIC0.52□□□□□ -2.33
SCN1AP35498 AL590004.1-201ENST00000405321 300 ntBASIC0.52□□□□□ -2.33
SCN1AP35498 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.52□□□□□ -2.33
SCN1AP35498 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.52□□□□□ -2.33
SCN1AP35498 MRPS35P2-201ENST00000508242 191 ntBASIC0.52□□□□□ -2.33
SCN1AP35498 MIR4711-201ENST00000578274 70 ntBASIC0.52□□□□□ -2.33
SCN1AP35498 AL133255.1-201ENST00000606374 441 ntBASIC0.52□□□□□ -2.33
SCN1AP35498 AL096861.1-201ENST00000610899 123 ntBASIC0.52□□□□□ -2.33
SCN1AP35498 MIR216A-201ENST00000385063 110 ntBASIC0.51□□□□□ -2.33
SCN1AP35498 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.51□□□□□ -2.33
SCN1AP35498 Y_RNA.587-201ENST00000391210 103 ntBASIC0.51□□□□□ -2.33
SCN1AP35498 Y_RNA.602-201ENST00000410535 92 ntBASIC0.51□□□□□ -2.33
SCN1AP35498 RNU6-602P-201ENST00000411155 105 ntBASIC0.51□□□□□ -2.33
SCN1AP35498 PMCHL1-202ENST00000423102 261 ntBASIC0.51□□□□□ -2.33
SCN1AP35498 AL160004.2-201ENST00000432935 350 ntBASIC0.51□□□□□ -2.33
SCN1AP35498 COX6CP6-201ENST00000490840 228 ntBASIC0.51□□□□□ -2.33
SCN1AP35498 RNU6-693P-201ENST00000516134 107 ntBASIC0.51□□□□□ -2.33
SCN1AP35498 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.51□□□□□ -2.33
SCN1AP35498 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.51□□□□□ -2.33
SCN1AP35498 AP003716.2-201ENST00000528260 108 ntBASIC0.51□□□□□ -2.33
SCN1AP35498 MIR4791-201ENST00000607666 84 ntBASIC0.51□□□□□ -2.33
SCN1AP35498 AC134503.1-201ENST00000633048 54 ntBASIC0.51□□□□□ -2.33
SCN1AP35498 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.51□□□□□ -2.33
SCN1AP35498 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.5□□□□□ -2.33
SCN1AP35498 U8.7-201ENST00000364940 136 ntBASIC0.5□□□□□ -2.33
SCN1AP35498 SNORA22B-201ENST00000383876 138 ntBASIC0.5□□□□□ -2.33
SCN1AP35498 RNU6-1323P-201ENST00000384025 107 ntBASIC0.5□□□□□ -2.33
SCN1AP35498 RNU6-708P-201ENST00000384217 107 ntBASIC0.5□□□□□ -2.33
SCN1AP35498 Y_RNA.621-201ENST00000411065 96 ntBASIC0.5□□□□□ -2.33
SCN1AP35498 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.5□□□□□ -2.33
SCN1AP35498 MTCO1P5-201ENST00000433573 344 ntBASIC0.5□□□□□ -2.33
SCN1AP35498 FABP5P4-201ENST00000437203 171 ntBASIC0.5□□□□□ -2.33
SCN1AP35498 SEPT14P8-201ENST00000508026 178 ntBASIC0.5□□□□□ -2.33
SCN1AP35498 RNU6-976P-201ENST00000516086 111 ntBASIC0.5□□□□□ -2.33
SCN1AP35498 RNU6-397P-201ENST00000516226 104 ntBASIC0.5□□□□□ -2.33
SCN1AP35498 RNU6-764P-201ENST00000516396 105 ntBASIC0.5□□□□□ -2.33
SCN1AP35498 SNORA18.4-201ENST00000516440 124 ntBASIC0.5□□□□□ -2.33
SCN1AP35498 RNU11-2P-201ENST00000516898 142 ntBASIC0.5□□□□□ -2.33
SCN1AP35498 SNORD116.3-201ENST00000517176 78 ntBASIC0.5□□□□□ -2.33
SCN1AP35498 AC136628.3-201ENST00000521868 290 ntBASIC0.5□□□□□ -2.33
SCN1AP35498 Y_RNA.813-201ENST00000364639 102 ntBASIC0.5□□□□□ -2.33
SCN1AP35498 SNORA24-201ENST00000384096 131 ntBASIC0.5□□□□□ -2.33
SCN1AP35498 SNRPGP10-201ENST00000432323 225 ntBASIC0.5□□□□□ -2.33
SCN1AP35498 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.5□□□□□ -2.33
SCN1AP35498 uc_338.4-201ENST00000616635 176 ntBASIC0.5□□□□□ -2.33
SCN1AP35498 MTND4P29-201ENST00000503122 1372 ntBASIC0.5□□□□□ -2.33
SCN1AP35498 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.49□□□□□ -2.33
SCN1AP35498 RNU6-899P-201ENST00000363947 107 ntBASIC0.49□□□□□ -2.33
SCN1AP35498 MIR193B-201ENST00000384907 83 ntBASIC0.49□□□□□ -2.33
SCN1AP35498 Y_RNA.581-201ENST00000391017 97 ntBASIC0.49□□□□□ -2.33
SCN1AP35498 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.49□□□□□ -2.33
SCN1AP35498 NDUFA4P2-201ENST00000489989 244 ntBASIC0.49□□□□□ -2.33
SCN1AP35498 AC100767.1-201ENST00000528178 123 ntBASIC0.49□□□□□ -2.33
SCN1AP35498 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.49□□□□□ -2.33
SCN1AP35498 MIR4724-201ENST00000579485 89 ntBASIC0.49□□□□□ -2.33
SCN1AP35498 AC106800.4-201ENST00000614905 153 ntBASIC0.49□□□□□ -2.33
SCN1AP35498 AC243829.3-201ENST00000622177 108 ntBASIC0.49□□□□□ -2.33
SCN1AP35498 AC134026.1-201ENST00000623249 2239 ntBASIC0.49□□□□□ -2.33
SCN1AP35498 U8.5-201ENST00000364528 136 ntBASIC0.48□□□□□ -2.33
SCN1AP35498 RNU6-144P-201ENST00000383951 107 ntBASIC0.48□□□□□ -2.33
SCN1AP35498 RNU6-364P-201ENST00000384387 107 ntBASIC0.48□□□□□ -2.33
SCN1AP35498 MIR548A2-201ENST00000384956 97 ntBASIC0.48□□□□□ -2.33
SCN1AP35498 SNORD12-201ENST00000391002 90 ntBASIC0.48□□□□□ -2.33
SCN1AP35498 SNORA26.5-201ENST00000391215 123 ntBASIC0.48□□□□□ -2.33
SCN1AP35498 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.48□□□□□ -2.33
SCN1AP35498 AC114737.2-201ENST00000421583 173 ntBASIC0.48□□□□□ -2.33
SCN1AP35498 U7.7-201ENST00000459276 60 ntBASIC0.48□□□□□ -2.33
SCN1AP35498 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.48□□□□□ -2.33
SCN1AP35498 AP000753.3-201ENST00000604083 169 ntBASIC0.48□□□□□ -2.33
SCN1AP35498 MIR924-201ENST00000638017 53 ntBASIC0.48□□□□□ -2.33
SCN1AP35498 RNU6-937P-201ENST00000384325 106 ntBASIC0.48□□□□□ -2.33
SCN1AP35498 MT-TN-201ENST00000387400 73 ntBASIC0.48□□□□□ -2.33
SCN1AP35498 MIR548O-201ENST00000408583 114 ntBASIC0.48□□□□□ -2.33
SCN1AP35498 AC022028.1-201ENST00000412054 408 ntBASIC0.48□□□□□ -2.33
SCN1AP35498 AC244098.3-201ENST00000424803 96 ntBASIC0.48□□□□□ -2.33
SCN1AP35498 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.48□□□□□ -2.33
SCN1AP35498 RNU6-475P-201ENST00000516073 104 ntBASIC0.48□□□□□ -2.33
SCN1AP35498 RNU4-77P-201ENST00000516692 156 ntBASIC0.48□□□□□ -2.33
SCN1AP35498 AC007751.1-201ENST00000529260 376 ntBASIC0.48□□□□□ -2.33
SCN1AP35498 AP000942.4-201ENST00000604811 241 ntBASIC0.48□□□□□ -2.33
SCN1AP35498 Y_RNA.30-201ENST00000362572 97 ntBASIC0.47□□□□□ -2.33
SCN1AP35498 SNORD14E-201ENST00000364009 85 ntBASIC0.47□□□□□ -2.33
SCN1AP35498 RNU6-1048P-201ENST00000364054 107 ntBASIC0.47□□□□□ -2.33
SCN1AP35498 Y_RNA.418-201ENST00000384029 102 ntBASIC0.47□□□□□ -2.33
SCN1AP35498 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.47□□□□□ -2.33
SCN1AP35498 SNORD115-46-201ENST00000390982 71 ntBASIC0.47□□□□□ -2.33
SCN1AP35498 SNORD72-201ENST00000390994 80 ntBASIC0.47□□□□□ -2.33
SCN1AP35498 RNU6-121P-201ENST00000410525 99 ntBASIC0.47□□□□□ -2.33
SCN1AP35498 Y_RNA.639-201ENST00000458981 102 ntBASIC0.47□□□□□ -2.33
SCN1AP35498 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.47□□□□□ -2.33
SCN1AP35498 AC004817.2-201ENST00000561794 651 ntBASIC0.47□□□□□ -2.33
SCN1AP35498 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.47□□□□□ -2.33
SCN1AP35498 RNU4-80P-201ENST00000363200 141 ntBASIC0.47□□□□□ -2.33
SCN1AP35498 Y_RNA.168-201ENST00000363740 102 ntBASIC0.47□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 181.1 ms