Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 ACA64.5-201ENST00000516207 127 ntBASIC0.75□□□□□ -2.29
SDC1P18827 RNU7-181P-201ENST00000517234 74 ntBASIC0.75□□□□□ -2.29
SDC1P18827 AL512605.2-201ENST00000592972 256 ntBASIC0.75□□□□□ -2.29
SDC1P18827 AL021707.8-201ENST00000609428 183 ntBASIC0.75□□□□□ -2.29
SDC1P18827 AC022140.2-201ENST00000623500 188 ntBASIC0.75□□□□□ -2.29
SDC1P18827 MIR6767-201ENST00000637302 66 ntBASIC0.75□□□□□ -2.29
SDC1P18827 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.75□□□□□ -2.29
SDC1P18827 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.75□□□□□ -2.29
SDC1P18827 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.74□□□□□ -2.29
SDC1P18827 SNORA25.1-201ENST00000362326 128 ntBASIC0.74□□□□□ -2.29
SDC1P18827 Y_RNA.16-201ENST00000362421 102 ntBASIC0.74□□□□□ -2.29
SDC1P18827 Y_RNA.64-201ENST00000362845 102 ntBASIC0.74□□□□□ -2.29
SDC1P18827 Y_RNA.153-201ENST00000363615 91 ntBASIC0.74□□□□□ -2.29
SDC1P18827 Y_RNA.164-201ENST00000363709 102 ntBASIC0.74□□□□□ -2.29
SDC1P18827 RNU6-654P-201ENST00000364373 107 ntBASIC0.74□□□□□ -2.29
SDC1P18827 RNU6-144P-201ENST00000383951 107 ntBASIC0.74□□□□□ -2.29
SDC1P18827 RNU6-662P-201ENST00000384253 104 ntBASIC0.74□□□□□ -2.29
SDC1P18827 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.74□□□□□ -2.29
SDC1P18827 RPS3AP1-201ENST00000413190 320 ntBASIC0.74□□□□□ -2.29
SDC1P18827 RNU4-57P-201ENST00000515980 135 ntBASIC0.74□□□□□ -2.29
SDC1P18827 RNA5SP255-201ENST00000516370 107 ntBASIC0.74□□□□□ -2.29
SDC1P18827 AC109810.1-201ENST00000534066 224 ntBASIC0.74□□□□□ -2.29
SDC1P18827 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC0.74□□□□□ -2.29
SDC1P18827 MIR6516-201ENST00000630554 81 ntBASIC0.74□□□□□ -2.29
SDC1P18827 MIR373-201ENST00000362273 69 ntBASIC0.73□□□□□ -2.29
SDC1P18827 RNU6-326P-201ENST00000365480 107 ntBASIC0.73□□□□□ -2.29
SDC1P18827 MIR146A-201ENST00000385201 99 ntBASIC0.73□□□□□ -2.29
SDC1P18827 SNORA53-201ENST00000391141 249 ntBASIC0.73□□□□□ -2.29
SDC1P18827 BTF3P11-201ENST00000426582 477 ntBASIC0.73□□□□□ -2.29
SDC1P18827 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.73□□□□□ -2.29
SDC1P18827 RNU6-1007P-201ENST00000516586 107 ntBASIC0.73□□□□□ -2.29
SDC1P18827 RNU6-113P-201ENST00000516653 101 ntBASIC0.73□□□□□ -2.29
SDC1P18827 RNU6-197P-201ENST00000516680 100 ntBASIC0.73□□□□□ -2.29
SDC1P18827 AP003733.2-201ENST00000529409 171 ntBASIC0.73□□□□□ -2.29
SDC1P18827 MIR5692C2-201ENST00000577959 77 ntBASIC0.73□□□□□ -2.29
SDC1P18827 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.73□□□□□ -2.29
SDC1P18827 Y_RNA.217-201ENST00000364214 105 ntBASIC0.72□□□□□ -2.29
SDC1P18827 RNU6-514P-201ENST00000384208 107 ntBASIC0.72□□□□□ -2.29
SDC1P18827 MTND4LP30-201ENST00000454092 297 ntBASIC0.72□□□□□ -2.29
SDC1P18827 MTND5P22-201ENST00000458380 195 ntBASIC0.72□□□□□ -2.29
SDC1P18827 Y_RNA.641-201ENST00000459414 105 ntBASIC0.72□□□□□ -2.29
SDC1P18827 RNU7-25P-201ENST00000516544 62 ntBASIC0.72□□□□□ -2.29
SDC1P18827 RNU7-149P-201ENST00000516739 59 ntBASIC0.72□□□□□ -2.29
SDC1P18827 RNU11-2P-201ENST00000516898 142 ntBASIC0.72□□□□□ -2.29
SDC1P18827 AC036111.3-201ENST00000526389 112 ntBASIC0.72□□□□□ -2.29
SDC1P18827 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.72□□□□□ -2.29
SDC1P18827 AC211469.2-201ENST00000605461 205 ntBASIC0.72□□□□□ -2.29
SDC1P18827 RNU6-94P-201ENST00000607728 107 ntBASIC0.72□□□□□ -2.29
SDC1P18827 AL008718.3-201ENST00000610217 321 ntBASIC0.72□□□□□ -2.29
SDC1P18827 AC106800.4-201ENST00000614905 153 ntBASIC0.72□□□□□ -2.29
SDC1P18827 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.71□□□□□ -2.3
SDC1P18827 Y_RNA.242-201ENST00000364473 110 ntBASIC0.71□□□□□ -2.3
SDC1P18827 RNU6-1335P-201ENST00000365426 107 ntBASIC0.71□□□□□ -2.3
SDC1P18827 MIR605-201ENST00000385078 83 ntBASIC0.71□□□□□ -2.3
SDC1P18827 RNA5SP95-201ENST00000410319 137 ntBASIC0.71□□□□□ -2.3
SDC1P18827 FABP5P4-201ENST00000437203 171 ntBASIC0.71□□□□□ -2.3
SDC1P18827 MTCYBP6-201ENST00000441810 138 ntBASIC0.71□□□□□ -2.3
SDC1P18827 RNA5SP102-201ENST00000516865 106 ntBASIC0.71□□□□□ -2.3
SDC1P18827 MIR4653-201ENST00000585107 83 ntBASIC0.71□□□□□ -2.3
SDC1P18827 AL356055.1-201ENST00000602528 446 ntBASIC0.71□□□□□ -2.3
SDC1P18827 AL049861.1-201ENST00000603130 150 ntBASIC0.71□□□□□ -2.3
SDC1P18827 AC037487.3-201ENST00000606668 112 ntBASIC0.71□□□□□ -2.3
SDC1P18827 uc_338.4-201ENST00000616635 176 ntBASIC0.71□□□□□ -2.3
SDC1P18827 MIR367-201ENST00000362299 68 ntBASIC0.7□□□□□ -2.3
SDC1P18827 Y_RNA.14-201ENST00000362415 103 ntBASIC0.7□□□□□ -2.3
SDC1P18827 Y_RNA.84-201ENST00000363011 104 ntBASIC0.7□□□□□ -2.3
SDC1P18827 Y_RNA.202-201ENST00000364083 110 ntBASIC0.7□□□□□ -2.3
SDC1P18827 Y_RNA.293-201ENST00000364908 93 ntBASIC0.7□□□□□ -2.3
SDC1P18827 Y_RNA.370-201ENST00000365589 108 ntBASIC0.7□□□□□ -2.3
SDC1P18827 SNORA51.10-201ENST00000384418 136 ntBASIC0.7□□□□□ -2.3
SDC1P18827 Y_RNA.547-201ENST00000384654 119 ntBASIC0.7□□□□□ -2.3
SDC1P18827 MIR608-201ENST00000384820 100 ntBASIC0.7□□□□□ -2.3
SDC1P18827 RNU2-64P-201ENST00000411315 191 ntBASIC0.7□□□□□ -2.3
SDC1P18827 AL035398.1-201ENST00000430869 322 ntBASIC0.7□□□□□ -2.3
SDC1P18827 RNU2-13P-201ENST00000515909 113 ntBASIC0.7□□□□□ -2.3
SDC1P18827 RNU6-1143P-201ENST00000516125 104 ntBASIC0.7□□□□□ -2.3
SDC1P18827 SNORA27.4-201ENST00000516650 95 ntBASIC0.7□□□□□ -2.3
SDC1P18827 Y_RNA.701-201ENST00000516812 110 ntBASIC0.7□□□□□ -2.3
SDC1P18827 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.7□□□□□ -2.3
SDC1P18827 MIR548AO-201ENST00000579992 96 ntBASIC0.7□□□□□ -2.3
SDC1P18827 AC012433.1-201ENST00000588916 398 ntBASIC0.7□□□□□ -2.3
SDC1P18827 MIR4791-201ENST00000607666 84 ntBASIC0.7□□□□□ -2.3
SDC1P18827 AC108706.1-201ENST00000611053 297 ntBASIC0.7□□□□□ -2.3
SDC1P18827 snoU18.1-201ENST00000629629 71 ntBASIC0.7□□□□□ -2.3
SDC1P18827 MIR6866-201ENST00000638146 69 ntBASIC0.7□□□□□ -2.3
SDC1P18827 MIR96-201ENST00000362288 78 ntBASIC0.69□□□□□ -2.3
SDC1P18827 Y_RNA.4-201ENST00000362333 112 ntBASIC0.69□□□□□ -2.3
SDC1P18827 Y_RNA.152-201ENST00000363578 100 ntBASIC0.69□□□□□ -2.3
SDC1P18827 RNU6-1138P-201ENST00000365359 106 ntBASIC0.69□□□□□ -2.3
SDC1P18827 SNORA33.2-201ENST00000365413 134 ntBASIC0.69□□□□□ -2.3
SDC1P18827 Y_RNA.537-201ENST00000384626 109 ntBASIC0.69□□□□□ -2.3
SDC1P18827 RNA5SP496-201ENST00000391240 109 ntBASIC0.69□□□□□ -2.3
SDC1P18827 MIR548O-201ENST00000408583 114 ntBASIC0.69□□□□□ -2.3
SDC1P18827 AC023449.1-201ENST00000454464 154 ntBASIC0.69□□□□□ -2.3
SDC1P18827 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.69□□□□□ -2.3
SDC1P18827 MIR4724-201ENST00000579485 89 ntBASIC0.69□□□□□ -2.3
SDC1P18827 MTND1P7-201ENST00000632801 297 ntBASIC0.69□□□□□ -2.3
SDC1P18827 UBE2WP1-201ENST00000362030 340 ntBASIC0.68□□□□□ -2.3
SDC1P18827 RNU4-10P-201ENST00000364383 140 ntBASIC0.68□□□□□ -2.3
SDC1P18827 SNORA1.2-201ENST00000365189 134 ntBASIC0.68□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms