Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC007751.1-201ENST00000529260 376 ntBASIC2.49□□□□□ -2.01
COL6A1P12109 AP002004.2-201ENST00000531656 154 ntBASIC2.49□□□□□ -2.01
COL6A1P12109 MTND5P34-201ENST00000568888 325 ntBASIC2.49□□□□□ -2.01
COL6A1P12109 AC008507.4-201ENST00000585464 127 ntBASIC2.49□□□□□ -2.01
COL6A1P12109 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
COL6A1P12109 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC2.48□□□□□ -2.01
COL6A1P12109 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.48□□□□□ -2.01
COL6A1P12109 Y_RNA.52-201ENST00000362760 96 ntBASIC2.48□□□□□ -2.01
COL6A1P12109 RNU1-51P-201ENST00000365345 176 ntBASIC2.48□□□□□ -2.01
COL6A1P12109 MIR802-201ENST00000390235 94 ntBASIC2.48□□□□□ -2.01
COL6A1P12109 CST2P1-201ENST00000425770 87 ntBASIC2.48□□□□□ -2.01
COL6A1P12109 RNA5SP57-201ENST00000459463 123 ntBASIC2.48□□□□□ -2.01
COL6A1P12109 MIR6845-201ENST00000613182 61 ntBASIC2.48□□□□□ -2.01
COL6A1P12109 U1.36-201ENST00000620684 176 ntBASIC2.48□□□□□ -2.01
COL6A1P12109 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC2.48□□□□□ -2.01
COL6A1P12109 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2.47□□□□□ -2.01
COL6A1P12109 SNORD114-6-201ENST00000364393 72 ntBASIC2.47□□□□□ -2.01
COL6A1P12109 RNU6-153P-201ENST00000364422 104 ntBASIC2.47□□□□□ -2.01
COL6A1P12109 DEFA7P-201ENST00000382676 285 ntBASIC2.47□□□□□ -2.01
COL6A1P12109 RNU6-1292P-201ENST00000383856 107 ntBASIC2.47□□□□□ -2.01
COL6A1P12109 SNORD24-201ENST00000383884 75 ntBASIC2.47□□□□□ -2.01
COL6A1P12109 MIR891A-201ENST00000401237 79 ntBASIC2.47□□□□□ -2.01
COL6A1P12109 SNORA11.4-201ENST00000408823 129 ntBASIC2.47□□□□□ -2.01
COL6A1P12109 AF228730.3-201ENST00000436691 102 ntBASIC2.47□□□□□ -2.01
COL6A1P12109 AL049830.1-201ENST00000468034 425 ntBASIC2.47□□□□□ -2.01
COL6A1P12109 RPS26P45-201ENST00000471748 340 ntBASIC2.47□□□□□ -2.01
COL6A1P12109 MIR3129-201ENST00000581095 76 ntBASIC2.47□□□□□ -2.01
COL6A1P12109 MIR4781-201ENST00000585250 76 ntBASIC2.47□□□□□ -2.01
COL6A1P12109 AC022217.4-201ENST00000604389 163 ntBASIC2.47□□□□□ -2.01
COL6A1P12109 MIR6129-201ENST00000616087 109 ntBASIC2.47□□□□□ -2.01
COL6A1P12109 U6.108-201ENST00000637764 58 ntBASIC2.47□□□□□ -2.01
COL6A1P12109 RNU6-888P-201ENST00000363010 101 ntBASIC2.46□□□□□ -2.02
COL6A1P12109 MIR676-201ENST00000390702 67 ntBASIC2.46□□□□□ -2.02
COL6A1P12109 SNORA40.5-201ENST00000391061 128 ntBASIC2.46□□□□□ -2.02
COL6A1P12109 MIR1262-201ENST00000408276 93 ntBASIC2.46□□□□□ -2.02
COL6A1P12109 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.46□□□□□ -2.02
COL6A1P12109 HMGN2P19-201ENST00000425149 265 ntBASIC2.46□□□□□ -2.02
COL6A1P12109 AL445646.1-201ENST00000431784 216 ntBASIC2.46□□□□□ -2.02
COL6A1P12109 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.46□□□□□ -2.02
COL6A1P12109 RNU2-60P-201ENST00000517290 128 ntBASIC2.46□□□□□ -2.02
COL6A1P12109 AL627230.6-201ENST00000611129 280 ntBASIC2.46□□□□□ -2.02
COL6A1P12109 AL591926.4-201ENST00000616895 298 ntBASIC2.46□□□□□ -2.02
COL6A1P12109 MIR6766-201ENST00000622641 72 ntBASIC2.46□□□□□ -2.02
COL6A1P12109 RNU6-429P-201ENST00000384582 108 ntBASIC2.45□□□□□ -2.02
COL6A1P12109 SNORD72-201ENST00000390994 80 ntBASIC2.45□□□□□ -2.02
COL6A1P12109 AL117342.1-201ENST00000404861 406 ntBASIC2.45□□□□□ -2.02
COL6A1P12109 BX510359.4-201ENST00000423750 193 ntBASIC2.45□□□□□ -2.02
COL6A1P12109 FTH1P12-201ENST00000432137 551 ntBASIC2.45□□□□□ -2.02
COL6A1P12109 RNA5SP200-201ENST00000516360 103 ntBASIC2.45□□□□□ -2.02
COL6A1P12109 RNU6-1270P-201ENST00000517128 108 ntBASIC2.45□□□□□ -2.02
COL6A1P12109 AL670379.3-201ENST00000605040 251 ntBASIC2.45□□□□□ -2.02
COL6A1P12109 AL022345.2-201ENST00000606307 135 ntBASIC2.45□□□□□ -2.02
COL6A1P12109 AL137847.3-201ENST00000611521 109 ntBASIC2.45□□□□□ -2.02
COL6A1P12109 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.45□□□□□ -2.02
COL6A1P12109 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
COL6A1P12109 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.44□□□□□ -2.02
COL6A1P12109 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.44□□□□□ -2.02
COL6A1P12109 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.44□□□□□ -2.02
COL6A1P12109 MIR21-201ENST00000362134 72 ntBASIC2.44□□□□□ -2.02
COL6A1P12109 RNU1-58P-201ENST00000362413 163 ntBASIC2.44□□□□□ -2.02
COL6A1P12109 SNORA1B-201ENST00000362535 133 ntBASIC2.44□□□□□ -2.02
COL6A1P12109 RNU6-309P-201ENST00000364573 106 ntBASIC2.44□□□□□ -2.02
COL6A1P12109 SNORD58C-201ENST00000365223 64 ntBASIC2.44□□□□□ -2.02
COL6A1P12109 SNORA1-201ENST00000384107 130 ntBASIC2.44□□□□□ -2.02
COL6A1P12109 SNORD61-201ENST00000384252 73 ntBASIC2.44□□□□□ -2.02
COL6A1P12109 SNRPGP13-201ENST00000442212 177 ntBASIC2.44□□□□□ -2.02
COL6A1P12109 RNU6-693P-201ENST00000516134 107 ntBASIC2.44□□□□□ -2.02
COL6A1P12109 SCARNA16.3-201ENST00000516595 184 ntBASIC2.44□□□□□ -2.02
COL6A1P12109 Y_RNA.709-201ENST00000516952 92 ntBASIC2.44□□□□□ -2.02
COL6A1P12109 AL391516.1-201ENST00000554380 2449 ntBASIC2.43□□□□□ -2.02
COL6A1P12109 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
COL6A1P12109 RNU6-862P-201ENST00000362804 105 ntBASIC2.43□□□□□ -2.02
COL6A1P12109 RNU6-23P-201ENST00000363283 107 ntBASIC2.43□□□□□ -2.02
COL6A1P12109 SNORA33-201ENST00000363664 130 ntBASIC2.43□□□□□ -2.02
COL6A1P12109 RNA5SP493-201ENST00000364115 91 ntBASIC2.43□□□□□ -2.02
COL6A1P12109 Y_RNA.346-201ENST00000365385 112 ntBASIC2.43□□□□□ -2.02
COL6A1P12109 MIR522-201ENST00000385071 87 ntBASIC2.43□□□□□ -2.02
COL6A1P12109 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.43□□□□□ -2.02
COL6A1P12109 RNY4P18-201ENST00000391107 89 ntBASIC2.43□□□□□ -2.02
COL6A1P12109 Y_RNA.617-201ENST00000410920 90 ntBASIC2.43□□□□□ -2.02
COL6A1P12109 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.43□□□□□ -2.02
COL6A1P12109 AC108667.1-201ENST00000428618 249 ntBASIC2.43□□□□□ -2.02
COL6A1P12109 AL163195.1-201ENST00000496941 348 ntBASIC2.43□□□□□ -2.02
COL6A1P12109 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.43□□□□□ -2.02
COL6A1P12109 PDCD5P2-201ENST00000507570 312 ntBASIC2.43□□□□□ -2.02
COL6A1P12109 Y_RNA.666-201ENST00000516187 112 ntBASIC2.43□□□□□ -2.02
COL6A1P12109 RNA5SP402-201ENST00000517148 110 ntBASIC2.43□□□□□ -2.02
COL6A1P12109 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.43□□□□□ -2.02
COL6A1P12109 AL359851.1-201ENST00000569460 4997 ntBASIC2.42□□□□□ -2.02
COL6A1P12109 SNORD68-201ENST00000363214 84 ntBASIC2.42□□□□□ -2.02
COL6A1P12109 MIR548A3-201ENST00000385297 97 ntBASIC2.42□□□□□ -2.02
COL6A1P12109 AL356379.1-201ENST00000414105 126 ntBASIC2.42□□□□□ -2.02
COL6A1P12109 SNORD33.1-201ENST00000516213 88 ntBASIC2.42□□□□□ -2.02
COL6A1P12109 MIR4299-201ENST00000577899 72 ntBASIC2.42□□□□□ -2.02
COL6A1P12109 AL121890.5-201ENST00000620848 304 ntBASIC2.42□□□□□ -2.02
COL6A1P12109 MIR6132-201ENST00000622083 109 ntBASIC2.42□□□□□ -2.02
COL6A1P12109 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
COL6A1P12109 MTND5P32-201ENST00000560711 1802 ntBASIC2.41□□□□□ -2.02
COL6A1P12109 SNORD14E-201ENST00000364009 85 ntBASIC2.41□□□□□ -2.02
COL6A1P12109 RNU6-442P-201ENST00000383968 104 ntBASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms