Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.26□□□□□ -2.21
HOXD4P09016 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.26□□□□□ -2.21
HOXD4P09016 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.25□□□□□ -2.21
HOXD4P09016 SNORD33-201ENST00000362761 85 ntBASIC1.25□□□□□ -2.21
HOXD4P09016 Y_RNA.262-201ENST00000364641 102 ntBASIC1.25□□□□□ -2.21
HOXD4P09016 Y_RNA.466-201ENST00000384294 113 ntBASIC1.25□□□□□ -2.21
HOXD4P09016 MIR194-1-201ENST00000384892 85 ntBASIC1.25□□□□□ -2.21
HOXD4P09016 MIR626-201ENST00000385032 94 ntBASIC1.25□□□□□ -2.21
HOXD4P09016 MIR1298-201ENST00000408783 112 ntBASIC1.25□□□□□ -2.21
HOXD4P09016 PGBD4P5-201ENST00000445958 426 ntBASIC1.25□□□□□ -2.21
HOXD4P09016 SNORD11-201ENST00000459124 84 ntBASIC1.25□□□□□ -2.21
HOXD4P09016 RNA5SP168-201ENST00000516642 112 ntBASIC1.25□□□□□ -2.21
HOXD4P09016 MIR2681-201ENST00000581814 105 ntBASIC1.25□□□□□ -2.21
HOXD4P09016 AC141273.2-201ENST00000618989 130 ntBASIC1.25□□□□□ -2.21
HOXD4P09016 AL513423.1-201ENST00000621695 132 ntBASIC1.25□□□□□ -2.21
HOXD4P09016 AC091895.1-201ENST00000624494 256 ntBASIC1.25□□□□□ -2.21
HOXD4P09016 MIR302D-201ENST00000362275 68 ntBASIC1.24□□□□□ -2.21
HOXD4P09016 Y_RNA.200-201ENST00000364018 102 ntBASIC1.24□□□□□ -2.21
HOXD4P09016 snoU2_19.4-201ENST00000364329 80 ntBASIC1.24□□□□□ -2.21
HOXD4P09016 Y_RNA.229-201ENST00000364347 113 ntBASIC1.24□□□□□ -2.21
HOXD4P09016 Y_RNA.308-201ENST00000365043 101 ntBASIC1.24□□□□□ -2.21
HOXD4P09016 RNU4-17P-201ENST00000365598 141 ntBASIC1.24□□□□□ -2.21
HOXD4P09016 RNU6-42P-201ENST00000384165 107 ntBASIC1.24□□□□□ -2.21
HOXD4P09016 Y_RNA.552-201ENST00000384665 112 ntBASIC1.24□□□□□ -2.21
HOXD4P09016 RNU6-131P-201ENST00000391144 107 ntBASIC1.24□□□□□ -2.21
HOXD4P09016 RNU6-381P-201ENST00000391259 108 ntBASIC1.24□□□□□ -2.21
HOXD4P09016 PIGPP3-201ENST00000425307 415 ntBASIC1.24□□□□□ -2.21
HOXD4P09016 COX6CP14-201ENST00000469580 174 ntBASIC1.24□□□□□ -2.21
HOXD4P09016 MIR4778-201ENST00000577635 80 ntBASIC1.24□□□□□ -2.21
HOXD4P09016 AC120024.3-201ENST00000603167 156 ntBASIC1.24□□□□□ -2.21
HOXD4P09016 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.24□□□□□ -2.21
HOXD4P09016 ICE2P2-201ENST00000483823 2787 ntBASIC1.24□□□□□ -2.21
HOXD4P09016 MIR411-201ENST00000362239 96 ntBASIC1.23□□□□□ -2.21
HOXD4P09016 Y_RNA.199-201ENST00000364014 102 ntBASIC1.23□□□□□ -2.21
HOXD4P09016 Y_RNA.274-201ENST00000364714 101 ntBASIC1.23□□□□□ -2.21
HOXD4P09016 RNU6-923P-201ENST00000364753 107 ntBASIC1.23□□□□□ -2.21
HOXD4P09016 RNU6-53P-201ENST00000365367 106 ntBASIC1.23□□□□□ -2.21
HOXD4P09016 MIR660-201ENST00000385235 97 ntBASIC1.23□□□□□ -2.21
HOXD4P09016 RNU6-493P-201ENST00000391321 108 ntBASIC1.23□□□□□ -2.21
HOXD4P09016 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.23□□□□□ -2.21
HOXD4P09016 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.23□□□□□ -2.21
HOXD4P09016 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.23□□□□□ -2.21
HOXD4P09016 CYCTP-201ENST00000504253 315 ntBASIC1.23□□□□□ -2.21
HOXD4P09016 RNU6-902P-201ENST00000517212 91 ntBASIC1.23□□□□□ -2.21
HOXD4P09016 MIR5688-201ENST00000580619 83 ntBASIC1.23□□□□□ -2.21
HOXD4P09016 MIR4308-201ENST00000580634 81 ntBASIC1.23□□□□□ -2.21
HOXD4P09016 AL049861.1-201ENST00000603130 150 ntBASIC1.23□□□□□ -2.21
HOXD4P09016 AC090425.1-201ENST00000610007 140 ntBASIC1.23□□□□□ -2.21
HOXD4P09016 SNORD3E-202ENST00000627253 216 ntBASIC1.23□□□□□ -2.21
HOXD4P09016 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
HOXD4P09016 RNU6-1123P-201ENST00000362347 106 ntBASIC1.22□□□□□ -2.21
HOXD4P09016 Y_RNA.83-201ENST00000363005 113 ntBASIC1.22□□□□□ -2.21
HOXD4P09016 Y_RNA.257-201ENST00000364596 102 ntBASIC1.22□□□□□ -2.21
HOXD4P09016 SNORD50B-201ENST00000364995 70 ntBASIC1.22□□□□□ -2.21
HOXD4P09016 RNU6-163P-201ENST00000384396 106 ntBASIC1.22□□□□□ -2.21
HOXD4P09016 Y_RNA.515-201ENST00000384535 112 ntBASIC1.22□□□□□ -2.21
HOXD4P09016 MT-TT-201ENST00000387460 66 ntBASIC1.22□□□□□ -2.21
HOXD4P09016 RNA5SP496-201ENST00000391240 109 ntBASIC1.22□□□□□ -2.21
HOXD4P09016 AC015922.2-201ENST00000435593 184 ntBASIC1.22□□□□□ -2.21
HOXD4P09016 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.22□□□□□ -2.21
HOXD4P09016 AC093850.1-201ENST00000454121 251 ntBASIC1.22□□□□□ -2.21
HOXD4P09016 AC245047.8-201ENST00000456455 284 ntBASIC1.22□□□□□ -2.21
HOXD4P09016 AC114811.1-201ENST00000507207 168 ntBASIC1.22□□□□□ -2.21
HOXD4P09016 SCARNA8-201ENST00000515924 131 ntBASIC1.22□□□□□ -2.21
HOXD4P09016 RNU7-12P-201ENST00000516030 62 ntBASIC1.22□□□□□ -2.21
HOXD4P09016 RNA5SP220-201ENST00000516298 104 ntBASIC1.22□□□□□ -2.21
HOXD4P09016 RNU6-453P-201ENST00000516819 85 ntBASIC1.22□□□□□ -2.21
HOXD4P09016 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.22□□□□□ -2.21
HOXD4P09016 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
HOXD4P09016 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
HOXD4P09016 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
HOXD4P09016 SNORD114-22-201ENST00000365423 72 ntBASIC1.21□□□□□ -2.22
HOXD4P09016 MIR513A1-201ENST00000385138 129 ntBASIC1.21□□□□□ -2.22
HOXD4P09016 RPL30P13-201ENST00000418873 348 ntBASIC1.21□□□□□ -2.22
HOXD4P09016 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.21□□□□□ -2.22
HOXD4P09016 RNU6-138P-201ENST00000515952 107 ntBASIC1.21□□□□□ -2.22
HOXD4P09016 SNORD45.4-201ENST00000516629 73 ntBASIC1.21□□□□□ -2.22
HOXD4P09016 Y_RNA.714-201ENST00000517065 90 ntBASIC1.21□□□□□ -2.22
HOXD4P09016 SUMO2P16-201ENST00000519475 264 ntBASIC1.21□□□□□ -2.22
HOXD4P09016 MIR3671-201ENST00000580455 88 ntBASIC1.21□□□□□ -2.22
HOXD4P09016 AC008507.4-201ENST00000585464 127 ntBASIC1.21□□□□□ -2.22
HOXD4P09016 AL078603.1-201ENST00000603824 313 ntBASIC1.21□□□□□ -2.22
HOXD4P09016 uc_338.4-201ENST00000616635 176 ntBASIC1.21□□□□□ -2.22
HOXD4P09016 MIR8063-201ENST00000621930 81 ntBASIC1.21□□□□□ -2.22
HOXD4P09016 RNU6-1084P-201ENST00000362498 107 ntBASIC1.2□□□□□ -2.22
HOXD4P09016 Y_RNA.297-201ENST00000364950 91 ntBASIC1.2□□□□□ -2.22
HOXD4P09016 SNORD1A-201ENST00000364968 72 ntBASIC1.2□□□□□ -2.22
HOXD4P09016 snoU2-30.1-201ENST00000365012 70 ntBASIC1.2□□□□□ -2.22
HOXD4P09016 RNU6-1318P-201ENST00000365389 103 ntBASIC1.2□□□□□ -2.22
HOXD4P09016 MIR616-201ENST00000385293 97 ntBASIC1.2□□□□□ -2.22
HOXD4P09016 SNORD72-201ENST00000390994 80 ntBASIC1.2□□□□□ -2.22
HOXD4P09016 Y_RNA.587-201ENST00000391210 103 ntBASIC1.2□□□□□ -2.22
HOXD4P09016 MIR891A-201ENST00000401237 79 ntBASIC1.2□□□□□ -2.22
HOXD4P09016 AC027119.1-201ENST00000440877 241 ntBASIC1.2□□□□□ -2.22
HOXD4P09016 AC079140.2-201ENST00000506193 142 ntBASIC1.2□□□□□ -2.22
HOXD4P09016 RN7SKP164-201ENST00000516138 266 ntBASIC1.2□□□□□ -2.22
HOXD4P09016 RNU6-1007P-201ENST00000516586 107 ntBASIC1.2□□□□□ -2.22
HOXD4P09016 RNU7-149P-201ENST00000516739 59 ntBASIC1.2□□□□□ -2.22
HOXD4P09016 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.2□□□□□ -2.22
HOXD4P09016 AC015688.6-201ENST00000577737 104 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 168.5 ms