Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SEPT14P17-201ENST00000617978 177 ntBASIC0.91□□□□□ -2.26
SIX3O95343 MIR4251-201ENST00000635819 61 ntBASIC0.91□□□□□ -2.26
SIX3O95343 Y_RNA.286-201ENST00000364813 102 ntBASIC0.9□□□□□ -2.27
SIX3O95343 SNORA63.7-201ENST00000365579 123 ntBASIC0.9□□□□□ -2.27
SIX3O95343 MIR1197-201ENST00000408818 88 ntBASIC0.9□□□□□ -2.27
SIX3O95343 RNU2-64P-201ENST00000411315 191 ntBASIC0.9□□□□□ -2.27
SIX3O95343 RNA5SP285-201ENST00000516619 119 ntBASIC0.9□□□□□ -2.27
SIX3O95343 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.9□□□□□ -2.27
SIX3O95343 AC037487.3-201ENST00000606668 112 ntBASIC0.9□□□□□ -2.27
SIX3O95343 PART1_1.1-201ENST00000611761 217 ntBASIC0.9□□□□□ -2.27
SIX3O95343 AC015726.2-201ENST00000620112 122 ntBASIC0.9□□□□□ -2.27
SIX3O95343 Y_RNA.412-201ENST00000384001 104 ntBASIC0.89□□□□□ -2.27
SIX3O95343 MIR1278-201ENST00000408753 81 ntBASIC0.89□□□□□ -2.27
SIX3O95343 MTND4P19-201ENST00000446659 478 ntBASIC0.89□□□□□ -2.27
SIX3O95343 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.89□□□□□ -2.27
SIX3O95343 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.89□□□□□ -2.27
SIX3O95343 SNORA40.15-201ENST00000516884 107 ntBASIC0.89□□□□□ -2.27
SIX3O95343 Pinc.1-201ENST00000616452 154 ntBASIC0.89□□□□□ -2.27
SIX3O95343 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.89□□□□□ -2.27
SIX3O95343 AC134026.1-201ENST00000623249 2239 ntBASIC0.89□□□□□ -2.27
SIX3O95343 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.88□□□□□ -2.27
SIX3O95343 RNU4-90P-201ENST00000362773 141 ntBASIC0.88□□□□□ -2.27
SIX3O95343 RNU6-450P-201ENST00000364654 107 ntBASIC0.88□□□□□ -2.27
SIX3O95343 SNORA72.4-201ENST00000384174 132 ntBASIC0.88□□□□□ -2.27
SIX3O95343 RNU6-514P-201ENST00000384208 107 ntBASIC0.88□□□□□ -2.27
SIX3O95343 MIR936-201ENST00000401264 98 ntBASIC0.88□□□□□ -2.27
SIX3O95343 RNU6-130P-201ENST00000411112 103 ntBASIC0.88□□□□□ -2.27
SIX3O95343 snoU13.25-201ENST00000458945 104 ntBASIC0.88□□□□□ -2.27
SIX3O95343 RNU6-988P-201ENST00000519081 107 ntBASIC0.88□□□□□ -2.27
SIX3O95343 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.88□□□□□ -2.27
SIX3O95343 AL512605.2-201ENST00000592972 256 ntBASIC0.88□□□□□ -2.27
SIX3O95343 RNU6-1205P-201ENST00000363625 106 ntBASIC0.87□□□□□ -2.27
SIX3O95343 RNU6-899P-201ENST00000363947 107 ntBASIC0.87□□□□□ -2.27
SIX3O95343 RNU1-36P-201ENST00000365130 165 ntBASIC0.87□□□□□ -2.27
SIX3O95343 Y_RNA.569-201ENST00000384749 103 ntBASIC0.87□□□□□ -2.27
SIX3O95343 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.87□□□□□ -2.27
SIX3O95343 snoU13.19-201ENST00000459148 104 ntBASIC0.87□□□□□ -2.27
SIX3O95343 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.87□□□□□ -2.27
SIX3O95343 PSMC1P5-201ENST00000512850 177 ntBASIC0.87□□□□□ -2.27
SIX3O95343 Y_RNA.715-201ENST00000517082 110 ntBASIC0.87□□□□□ -2.27
SIX3O95343 Y_RNA.721-201ENST00000517207 102 ntBASIC0.87□□□□□ -2.27
SIX3O95343 MIR4714-201ENST00000580728 77 ntBASIC0.87□□□□□ -2.27
SIX3O95343 AC005357.1-201ENST00000588399 301 ntBASIC0.87□□□□□ -2.27
SIX3O95343 MIR2909-201ENST00000617113 69 ntBASIC0.87□□□□□ -2.27
SIX3O95343 Y_RNA.183-201ENST00000363882 113 ntBASIC0.86□□□□□ -2.27
SIX3O95343 RNU2-14P-201ENST00000411053 191 ntBASIC0.86□□□□□ -2.27
SIX3O95343 MTATP6P23-201ENST00000440153 476 ntBASIC0.86□□□□□ -2.27
SIX3O95343 SCARNA8-201ENST00000515924 131 ntBASIC0.86□□□□□ -2.27
SIX3O95343 AC109810.1-201ENST00000534066 224 ntBASIC0.86□□□□□ -2.27
SIX3O95343 MIR4300-201ENST00000581016 96 ntBASIC0.86□□□□□ -2.27
SIX3O95343 MIR548AR-201ENST00000582191 57 ntBASIC0.86□□□□□ -2.27
SIX3O95343 AC131055.1-201ENST00000584626 316 ntBASIC0.86□□□□□ -2.27
SIX3O95343 Y_RNA.14-201ENST00000362415 103 ntBASIC0.85□□□□□ -2.27
SIX3O95343 RNU6-1187P-201ENST00000364771 110 ntBASIC0.85□□□□□ -2.27
SIX3O95343 SNORA1.2-201ENST00000365189 134 ntBASIC0.85□□□□□ -2.27
SIX3O95343 Y_RNA.395-201ENST00000383945 109 ntBASIC0.85□□□□□ -2.27
SIX3O95343 SNORA51.10-201ENST00000384418 136 ntBASIC0.85□□□□□ -2.27
SIX3O95343 SNORD89-201ENST00000390981 114 ntBASIC0.85□□□□□ -2.27
SIX3O95343 U8.17-201ENST00000391292 132 ntBASIC0.85□□□□□ -2.27
SIX3O95343 MIR1185-1-201ENST00000408598 86 ntBASIC0.85□□□□□ -2.27
SIX3O95343 AC010655.3-201ENST00000478818 450 ntBASIC0.85□□□□□ -2.27
SIX3O95343 NDUFA4P2-201ENST00000489989 244 ntBASIC0.85□□□□□ -2.27
SIX3O95343 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.85□□□□□ -2.27
SIX3O95343 RNU6-191P-201ENST00000516295 94 ntBASIC0.85□□□□□ -2.27
SIX3O95343 RNU6-197P-201ENST00000516680 100 ntBASIC0.85□□□□□ -2.27
SIX3O95343 AC008507.4-201ENST00000585464 127 ntBASIC0.85□□□□□ -2.27
SIX3O95343 AC012433.1-201ENST00000588916 398 ntBASIC0.85□□□□□ -2.27
SIX3O95343 7SK.10-201ENST00000621414 298 ntBASIC0.85□□□□□ -2.27
SIX3O95343 RNU6-674P-201ENST00000363831 107 ntBASIC0.84□□□□□ -2.27
SIX3O95343 RNU6-801P-201ENST00000364087 105 ntBASIC0.84□□□□□ -2.27
SIX3O95343 RNU6-268P-201ENST00000364174 107 ntBASIC0.84□□□□□ -2.27
SIX3O95343 Y_RNA.370-201ENST00000365589 108 ntBASIC0.84□□□□□ -2.27
SIX3O95343 Y_RNA.460-201ENST00000384255 102 ntBASIC0.84□□□□□ -2.27
SIX3O95343 SNORA2B-201ENST00000384583 137 ntBASIC0.84□□□□□ -2.27
SIX3O95343 MIR608-201ENST00000384820 100 ntBASIC0.84□□□□□ -2.27
SIX3O95343 MIR570-201ENST00000384917 97 ntBASIC0.84□□□□□ -2.27
SIX3O95343 SNORD28B-201ENST00000390993 75 ntBASIC0.84□□□□□ -2.27
SIX3O95343 SNORA53-201ENST00000391141 249 ntBASIC0.84□□□□□ -2.27
SIX3O95343 RNA5SP255-201ENST00000516370 107 ntBASIC0.84□□□□□ -2.27
SIX3O95343 RNU6-897P-201ENST00000517135 105 ntBASIC0.84□□□□□ -2.27
SIX3O95343 MIR4698-201ENST00000577795 80 ntBASIC0.84□□□□□ -2.27
SIX3O95343 FAM71BP1-201ENST00000604431 523 ntBASIC0.84□□□□□ -2.27
SIX3O95343 LARP7P1-201ENST00000605576 316 ntBASIC0.84□□□□□ -2.27
SIX3O95343 AL136317.1-201ENST00000612653 226 ntBASIC0.84□□□□□ -2.27
SIX3O95343 MIR6857-201ENST00000613267 93 ntBASIC0.84□□□□□ -2.27
SIX3O95343 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
SIX3O95343 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.83□□□□□ -2.28
SIX3O95343 MIR367-201ENST00000362299 68 ntBASIC0.83□□□□□ -2.28
SIX3O95343 SNORA25.1-201ENST00000362326 128 ntBASIC0.83□□□□□ -2.28
SIX3O95343 Y_RNA.31-201ENST00000362574 102 ntBASIC0.83□□□□□ -2.28
SIX3O95343 MIR532-201ENST00000385025 91 ntBASIC0.83□□□□□ -2.28
SIX3O95343 SNORD72-201ENST00000390994 80 ntBASIC0.83□□□□□ -2.28
SIX3O95343 RNU6-823P-201ENST00000391042 103 ntBASIC0.83□□□□□ -2.28
SIX3O95343 SNORA26.5-201ENST00000391215 123 ntBASIC0.83□□□□□ -2.28
SIX3O95343 MTND4LP30-201ENST00000454092 297 ntBASIC0.83□□□□□ -2.28
SIX3O95343 MRPS35P2-201ENST00000508242 191 ntBASIC0.83□□□□□ -2.28
SIX3O95343 RNU7-181P-201ENST00000517234 74 ntBASIC0.83□□□□□ -2.28
SIX3O95343 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.83□□□□□ -2.28
SIX3O95343 Y_RNA.293-201ENST00000364908 93 ntBASIC0.82□□□□□ -2.28
SIX3O95343 SNORD42.2-201ENST00000365570 69 ntBASIC0.82□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 118.7 ms