Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 SNORD111-201ENST00000408139 94 ntBASIC0.75□□□□□ -2.29
FOXA2Q9Y261 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.75□□□□□ -2.29
FOXA2Q9Y261 MTND4P19-201ENST00000446659 478 ntBASIC0.75□□□□□ -2.29
FOXA2Q9Y261 RNU6-191P-201ENST00000516295 94 ntBASIC0.75□□□□□ -2.29
FOXA2Q9Y261 RNU6-830P-201ENST00000516353 107 ntBASIC0.75□□□□□ -2.29
FOXA2Q9Y261 AC025627.3-201ENST00000582078 182 ntBASIC0.75□□□□□ -2.29
FOXA2Q9Y261 AC106800.4-201ENST00000614905 153 ntBASIC0.75□□□□□ -2.29
FOXA2Q9Y261 Y_RNA.4-201ENST00000362333 112 ntBASIC0.74□□□□□ -2.29
FOXA2Q9Y261 RNU6-899P-201ENST00000363947 107 ntBASIC0.74□□□□□ -2.29
FOXA2Q9Y261 SNORA1.2-201ENST00000365189 134 ntBASIC0.74□□□□□ -2.29
FOXA2Q9Y261 Y_RNA.419-201ENST00000384041 102 ntBASIC0.74□□□□□ -2.29
FOXA2Q9Y261 SNORA51.10-201ENST00000384418 136 ntBASIC0.74□□□□□ -2.29
FOXA2Q9Y261 MIR570-201ENST00000384917 97 ntBASIC0.74□□□□□ -2.29
FOXA2Q9Y261 MIR605-201ENST00000385078 83 ntBASIC0.74□□□□□ -2.29
FOXA2Q9Y261 RNU6-308P-201ENST00000390957 107 ntBASIC0.74□□□□□ -2.29
FOXA2Q9Y261 SNORD72-201ENST00000390994 80 ntBASIC0.74□□□□□ -2.29
FOXA2Q9Y261 SNORA26.5-201ENST00000391215 123 ntBASIC0.74□□□□□ -2.29
FOXA2Q9Y261 SNRPGP14-201ENST00000435400 219 ntBASIC0.74□□□□□ -2.29
FOXA2Q9Y261 U7.7-201ENST00000459276 60 ntBASIC0.74□□□□□ -2.29
FOXA2Q9Y261 RNA5SP102-201ENST00000516865 106 ntBASIC0.74□□□□□ -2.29
FOXA2Q9Y261 Y_RNA.715-201ENST00000517082 110 ntBASIC0.74□□□□□ -2.29
FOXA2Q9Y261 MIR4300-201ENST00000581016 96 ntBASIC0.74□□□□□ -2.29
FOXA2Q9Y261 AL353765.1-201ENST00000605514 183 ntBASIC0.74□□□□□ -2.29
FOXA2Q9Y261 RNU6-94P-201ENST00000607728 107 ntBASIC0.74□□□□□ -2.29
FOXA2Q9Y261 AL136317.1-201ENST00000612653 226 ntBASIC0.74□□□□□ -2.29
FOXA2Q9Y261 7SK.10-201ENST00000621414 298 ntBASIC0.74□□□□□ -2.29
FOXA2Q9Y261 RNU4-90P-201ENST00000362773 141 ntBASIC0.73□□□□□ -2.29
FOXA2Q9Y261 RNU6-1205P-201ENST00000363625 106 ntBASIC0.73□□□□□ -2.29
FOXA2Q9Y261 Y_RNA.183-201ENST00000363882 113 ntBASIC0.73□□□□□ -2.29
FOXA2Q9Y261 Y_RNA.222-201ENST00000364264 102 ntBASIC0.73□□□□□ -2.29
FOXA2Q9Y261 SNORD113.3-201ENST00000364630 78 ntBASIC0.73□□□□□ -2.29
FOXA2Q9Y261 SNORD42.2-201ENST00000365570 69 ntBASIC0.73□□□□□ -2.29
FOXA2Q9Y261 Y_RNA.569-201ENST00000384749 103 ntBASIC0.73□□□□□ -2.29
FOXA2Q9Y261 MIR532-201ENST00000385025 91 ntBASIC0.73□□□□□ -2.29
FOXA2Q9Y261 RNU6-101P-201ENST00000410323 104 ntBASIC0.73□□□□□ -2.29
FOXA2Q9Y261 MTND4LP11-201ENST00000422184 280 ntBASIC0.73□□□□□ -2.29
FOXA2Q9Y261 AL035398.1-201ENST00000430869 322 ntBASIC0.73□□□□□ -2.29
FOXA2Q9Y261 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.73□□□□□ -2.29
FOXA2Q9Y261 AL392103.1-201ENST00000447000 198 ntBASIC0.73□□□□□ -2.29
FOXA2Q9Y261 SCARNA8-201ENST00000515924 131 ntBASIC0.73□□□□□ -2.29
FOXA2Q9Y261 MIR2115-201ENST00000516657 100 ntBASIC0.73□□□□□ -2.29
FOXA2Q9Y261 RNU7-181P-201ENST00000517234 74 ntBASIC0.73□□□□□ -2.29
FOXA2Q9Y261 AC036111.3-201ENST00000526389 112 ntBASIC0.73□□□□□ -2.29
FOXA2Q9Y261 AC012433.1-201ENST00000588916 398 ntBASIC0.73□□□□□ -2.29
FOXA2Q9Y261 AC104465.1-201ENST00000611365 139 ntBASIC0.73□□□□□ -2.29
FOXA2Q9Y261 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.73□□□□□ -2.29
FOXA2Q9Y261 AL442644.1-201ENST00000454390 3105 ntBASIC0.73□□□□□ -2.29
FOXA2Q9Y261 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.72□□□□□ -2.29
FOXA2Q9Y261 Y_RNA.164-201ENST00000363709 102 ntBASIC0.72□□□□□ -2.29
FOXA2Q9Y261 SNORD114-27-201ENST00000363766 70 ntBASIC0.72□□□□□ -2.29
FOXA2Q9Y261 RNU6-654P-201ENST00000364373 107 ntBASIC0.72□□□□□ -2.29
FOXA2Q9Y261 Y_RNA.389-201ENST00000383924 113 ntBASIC0.72□□□□□ -2.29
FOXA2Q9Y261 Y_RNA.418-201ENST00000384029 102 ntBASIC0.72□□□□□ -2.29
FOXA2Q9Y261 SNORA2B-201ENST00000384583 137 ntBASIC0.72□□□□□ -2.29
FOXA2Q9Y261 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.72□□□□□ -2.29
FOXA2Q9Y261 Y_RNA.639-201ENST00000458981 102 ntBASIC0.72□□□□□ -2.29
FOXA2Q9Y261 SNORD11-201ENST00000459124 84 ntBASIC0.72□□□□□ -2.29
FOXA2Q9Y261 RNU6-764P-201ENST00000516396 105 ntBASIC0.72□□□□□ -2.29
FOXA2Q9Y261 RNU6-113P-201ENST00000516653 101 ntBASIC0.72□□□□□ -2.29
FOXA2Q9Y261 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.72□□□□□ -2.29
FOXA2Q9Y261 AC136443.5-201ENST00000603741 370 ntBASIC0.72□□□□□ -2.29
FOXA2Q9Y261 AC006441.5-201ENST00000612680 209 ntBASIC0.72□□□□□ -2.29
FOXA2Q9Y261 MIR6857-201ENST00000613267 93 ntBASIC0.72□□□□□ -2.29
FOXA2Q9Y261 MIR6516-201ENST00000630554 81 ntBASIC0.72□□□□□ -2.29
FOXA2Q9Y261 Y_RNA.31-201ENST00000362574 102 ntBASIC0.71□□□□□ -2.3
FOXA2Q9Y261 RNU6-450P-201ENST00000364654 107 ntBASIC0.71□□□□□ -2.3
FOXA2Q9Y261 RNU6-1335P-201ENST00000365426 107 ntBASIC0.71□□□□□ -2.3
FOXA2Q9Y261 RNU6-144P-201ENST00000383951 107 ntBASIC0.71□□□□□ -2.3
FOXA2Q9Y261 RNU6-102P-201ENST00000384485 104 ntBASIC0.71□□□□□ -2.3
FOXA2Q9Y261 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.71□□□□□ -2.3
FOXA2Q9Y261 AC006461.1-201ENST00000412637 326 ntBASIC0.71□□□□□ -2.3
FOXA2Q9Y261 RPS26P5-201ENST00000418544 335 ntBASIC0.71□□□□□ -2.3
FOXA2Q9Y261 AL606490.4-201ENST00000423117 127 ntBASIC0.71□□□□□ -2.3
FOXA2Q9Y261 HSPE1P25-201ENST00000455484 251 ntBASIC0.71□□□□□ -2.3
FOXA2Q9Y261 AC113410.1-201ENST00000505029 247 ntBASIC0.71□□□□□ -2.3
FOXA2Q9Y261 MRPS35P2-201ENST00000508242 191 ntBASIC0.71□□□□□ -2.3
FOXA2Q9Y261 RNU6-1110P-201ENST00000516462 101 ntBASIC0.71□□□□□ -2.3
FOXA2Q9Y261 RNU6-897P-201ENST00000517135 105 ntBASIC0.71□□□□□ -2.3
FOXA2Q9Y261 Y_RNA.721-201ENST00000517207 102 ntBASIC0.71□□□□□ -2.3
FOXA2Q9Y261 MIR4653-201ENST00000585107 83 ntBASIC0.71□□□□□ -2.3
FOXA2Q9Y261 AC023934.1-201ENST00000574529 2389 ntBASIC0.71□□□□□ -2.3
FOXA2Q9Y261 Y_RNA.136-201ENST00000363444 102 ntBASIC0.7□□□□□ -2.3
FOXA2Q9Y261 SNORD114-2-201ENST00000363953 78 ntBASIC0.7□□□□□ -2.3
FOXA2Q9Y261 RNU6-396P-201ENST00000365369 105 ntBASIC0.7□□□□□ -2.3
FOXA2Q9Y261 Y_RNA.509-201ENST00000384506 99 ntBASIC0.7□□□□□ -2.3
FOXA2Q9Y261 Y_RNA.537-201ENST00000384626 109 ntBASIC0.7□□□□□ -2.3
FOXA2Q9Y261 MIR100-201ENST00000385259 80 ntBASIC0.7□□□□□ -2.3
FOXA2Q9Y261 RNU6-763P-201ENST00000390865 106 ntBASIC0.7□□□□□ -2.3
FOXA2Q9Y261 RNU6-823P-201ENST00000391042 103 ntBASIC0.7□□□□□ -2.3
FOXA2Q9Y261 AL603910.2-201ENST00000407268 136 ntBASIC0.7□□□□□ -2.3
FOXA2Q9Y261 SNORD99-201ENST00000408612 74 ntBASIC0.7□□□□□ -2.3
FOXA2Q9Y261 MIR1302-7-201ENST00000408841 72 ntBASIC0.7□□□□□ -2.3
FOXA2Q9Y261 RNU6-496P-201ENST00000516145 99 ntBASIC0.7□□□□□ -2.3
FOXA2Q9Y261 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.7□□□□□ -2.3
FOXA2Q9Y261 AL512605.2-201ENST00000592972 256 ntBASIC0.7□□□□□ -2.3
FOXA2Q9Y261 C8orf59P2-201ENST00000603441 271 ntBASIC0.7□□□□□ -2.3
FOXA2Q9Y261 RAC1P9-201ENST00000604990 392 ntBASIC0.7□□□□□ -2.3
FOXA2Q9Y261 MIR8070-201ENST00000616510 88 ntBASIC0.7□□□□□ -2.3
FOXA2Q9Y261 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
FOXA2Q9Y261 Y_RNA.14-201ENST00000362415 103 ntBASIC0.69□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms