Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 NDUFA4P2-201ENST00000489989 244 ntBASIC0.85□□□□□ -2.27
LHX3Q9UBR4 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.85□□□□□ -2.27
LHX3Q9UBR4 PDCD5P2-201ENST00000507570 312 ntBASIC0.85□□□□□ -2.27
LHX3Q9UBR4 RNU7-43P-201ENST00000516554 64 ntBASIC0.85□□□□□ -2.27
LHX3Q9UBR4 RNU6-897P-201ENST00000517135 105 ntBASIC0.85□□□□□ -2.27
LHX3Q9UBR4 AC136628.3-201ENST00000521868 290 ntBASIC0.85□□□□□ -2.27
LHX3Q9UBR4 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.85□□□□□ -2.27
LHX3Q9UBR4 MIR4764-201ENST00000580680 88 ntBASIC0.85□□□□□ -2.27
LHX3Q9UBR4 AL020996.3-201ENST00000606617 222 ntBASIC0.85□□□□□ -2.27
LHX3Q9UBR4 AL160413.1-201ENST00000622780 310 ntBASIC0.85□□□□□ -2.27
LHX3Q9UBR4 AC090574.1-201ENST00000623186 233 ntBASIC0.85□□□□□ -2.27
LHX3Q9UBR4 Y_RNA.418-201ENST00000384029 102 ntBASIC0.84□□□□□ -2.27
LHX3Q9UBR4 SNORA72.4-201ENST00000384174 132 ntBASIC0.84□□□□□ -2.27
LHX3Q9UBR4 MIR802-201ENST00000390235 94 ntBASIC0.84□□□□□ -2.27
LHX3Q9UBR4 SNORA26.5-201ENST00000391215 123 ntBASIC0.84□□□□□ -2.27
LHX3Q9UBR4 MTCO2P33-201ENST00000402100 465 ntBASIC0.84□□□□□ -2.27
LHX3Q9UBR4 RNU6-101P-201ENST00000410323 104 ntBASIC0.84□□□□□ -2.27
LHX3Q9UBR4 HSPE1P25-201ENST00000455484 251 ntBASIC0.84□□□□□ -2.27
LHX3Q9UBR4 RNU6-437P-201ENST00000459408 95 ntBASIC0.84□□□□□ -2.27
LHX3Q9UBR4 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.84□□□□□ -2.27
LHX3Q9UBR4 SNORA4-201ENST00000584302 138 ntBASIC0.84□□□□□ -2.27
LHX3Q9UBR4 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
LHX3Q9UBR4 MIR103A2-201ENST00000362154 78 ntBASIC0.83□□□□□ -2.28
LHX3Q9UBR4 Y_RNA.28-201ENST00000362554 111 ntBASIC0.83□□□□□ -2.28
LHX3Q9UBR4 Y_RNA.183-201ENST00000363882 113 ntBASIC0.83□□□□□ -2.28
LHX3Q9UBR4 RNU1-36P-201ENST00000365130 165 ntBASIC0.83□□□□□ -2.28
LHX3Q9UBR4 SNORA63.7-201ENST00000365579 123 ntBASIC0.83□□□□□ -2.28
LHX3Q9UBR4 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.83□□□□□ -2.28
LHX3Q9UBR4 RPS29P1-201ENST00000465274 159 ntBASIC0.83□□□□□ -2.28
LHX3Q9UBR4 RNU6-191P-201ENST00000516295 94 ntBASIC0.83□□□□□ -2.28
LHX3Q9UBR4 RPL23AP91-201ENST00000569211 455 ntBASIC0.83□□□□□ -2.28
LHX3Q9UBR4 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.83□□□□□ -2.28
LHX3Q9UBR4 AC087685.1-201ENST00000587507 141 ntBASIC0.83□□□□□ -2.28
LHX3Q9UBR4 AC005357.1-201ENST00000588399 301 ntBASIC0.83□□□□□ -2.28
LHX3Q9UBR4 Y_RNA.105-201ENST00000363182 111 ntBASIC0.82□□□□□ -2.28
LHX3Q9UBR4 SNORD114-2-201ENST00000363953 78 ntBASIC0.82□□□□□ -2.28
LHX3Q9UBR4 Y_RNA.222-201ENST00000364264 102 ntBASIC0.82□□□□□ -2.28
LHX3Q9UBR4 RNU6-442P-201ENST00000383968 104 ntBASIC0.82□□□□□ -2.28
LHX3Q9UBR4 Y_RNA.460-201ENST00000384255 102 ntBASIC0.82□□□□□ -2.28
LHX3Q9UBR4 SNORD38C-201ENST00000384381 69 ntBASIC0.82□□□□□ -2.28
LHX3Q9UBR4 SNORD28B-201ENST00000390993 75 ntBASIC0.82□□□□□ -2.28
LHX3Q9UBR4 RNU6-1248P-201ENST00000391096 64 ntBASIC0.82□□□□□ -2.28
LHX3Q9UBR4 MIR1252-201ENST00000408861 65 ntBASIC0.82□□□□□ -2.28
LHX3Q9UBR4 Y_RNA.631-201ENST00000459607 101 ntBASIC0.82□□□□□ -2.28
LHX3Q9UBR4 MRPS35P2-201ENST00000508242 191 ntBASIC0.82□□□□□ -2.28
LHX3Q9UBR4 RNU6-764P-201ENST00000516396 105 ntBASIC0.82□□□□□ -2.28
LHX3Q9UBR4 RNU6-988P-201ENST00000519081 107 ntBASIC0.82□□□□□ -2.28
LHX3Q9UBR4 AP003716.2-201ENST00000528260 108 ntBASIC0.82□□□□□ -2.28
LHX3Q9UBR4 MIR7111-201ENST00000619751 72 ntBASIC0.82□□□□□ -2.28
LHX3Q9UBR4 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.82□□□□□ -2.28
LHX3Q9UBR4 Y_RNA.138-201ENST00000363462 102 ntBASIC0.81□□□□□ -2.28
LHX3Q9UBR4 RNA5SP48-201ENST00000363969 126 ntBASIC0.81□□□□□ -2.28
LHX3Q9UBR4 SNORA22B-201ENST00000383876 138 ntBASIC0.81□□□□□ -2.28
LHX3Q9UBR4 Y_RNA.569-201ENST00000384749 103 ntBASIC0.81□□□□□ -2.28
LHX3Q9UBR4 SNORD115-46-201ENST00000390982 71 ntBASIC0.81□□□□□ -2.28
LHX3Q9UBR4 SNORD72-201ENST00000390994 80 ntBASIC0.81□□□□□ -2.28
LHX3Q9UBR4 MIR1185-1-201ENST00000408598 86 ntBASIC0.81□□□□□ -2.28
LHX3Q9UBR4 RNU6-351P-201ENST00000516097 100 ntBASIC0.81□□□□□ -2.28
LHX3Q9UBR4 RNU6-496P-201ENST00000516145 99 ntBASIC0.81□□□□□ -2.28
LHX3Q9UBR4 ACA64.5-201ENST00000516207 127 ntBASIC0.81□□□□□ -2.28
LHX3Q9UBR4 AC023827.1-201ENST00000569247 97 ntBASIC0.81□□□□□ -2.28
LHX3Q9UBR4 MIR2681-201ENST00000581814 105 ntBASIC0.81□□□□□ -2.28
LHX3Q9UBR4 MIR548AR-201ENST00000582191 57 ntBASIC0.81□□□□□ -2.28
LHX3Q9UBR4 AC108706.1-201ENST00000611053 297 ntBASIC0.81□□□□□ -2.28
LHX3Q9UBR4 SEPT14P17-201ENST00000617978 177 ntBASIC0.81□□□□□ -2.28
LHX3Q9UBR4 RNU4-90P-201ENST00000362773 141 ntBASIC0.8□□□□□ -2.28
LHX3Q9UBR4 MIR570-201ENST00000384917 97 ntBASIC0.8□□□□□ -2.28
LHX3Q9UBR4 RNU6-763P-201ENST00000390865 106 ntBASIC0.8□□□□□ -2.28
LHX3Q9UBR4 RNU6-121P-201ENST00000410525 99 ntBASIC0.8□□□□□ -2.28
LHX3Q9UBR4 SNRPGP14-201ENST00000435400 219 ntBASIC0.8□□□□□ -2.28
LHX3Q9UBR4 FABP5P4-201ENST00000437203 171 ntBASIC0.8□□□□□ -2.28
LHX3Q9UBR4 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.8□□□□□ -2.28
LHX3Q9UBR4 Y_RNA.721-201ENST00000517207 102 ntBASIC0.8□□□□□ -2.28
LHX3Q9UBR4 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.8□□□□□ -2.28
LHX3Q9UBR4 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.8□□□□□ -2.28
LHX3Q9UBR4 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.8□□□□□ -2.28
LHX3Q9UBR4 AL442644.1-201ENST00000454390 3105 ntBASIC0.8□□□□□ -2.28
LHX3Q9UBR4 Y_RNA.61-201ENST00000362835 102 ntBASIC0.79□□□□□ -2.28
LHX3Q9UBR4 Y_RNA.128-201ENST00000363391 112 ntBASIC0.79□□□□□ -2.28
LHX3Q9UBR4 Y_RNA.136-201ENST00000363444 102 ntBASIC0.79□□□□□ -2.28
LHX3Q9UBR4 RNU6-674P-201ENST00000363831 107 ntBASIC0.79□□□□□ -2.28
LHX3Q9UBR4 RNU6-268P-201ENST00000364174 107 ntBASIC0.79□□□□□ -2.28
LHX3Q9UBR4 Y_RNA.216-201ENST00000364205 93 ntBASIC0.79□□□□□ -2.28
LHX3Q9UBR4 RNU6-1187P-201ENST00000364771 110 ntBASIC0.79□□□□□ -2.28
LHX3Q9UBR4 Y_RNA.535-201ENST00000384612 99 ntBASIC0.79□□□□□ -2.28
LHX3Q9UBR4 RPS3AP1-201ENST00000413190 320 ntBASIC0.79□□□□□ -2.28
LHX3Q9UBR4 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.79□□□□□ -2.28
LHX3Q9UBR4 MTCO1P5-201ENST00000433573 344 ntBASIC0.79□□□□□ -2.28
LHX3Q9UBR4 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.79□□□□□ -2.28
LHX3Q9UBR4 AC098869.1-201ENST00000481627 292 ntBASIC0.79□□□□□ -2.28
LHX3Q9UBR4 SNORA40.15-201ENST00000516884 107 ntBASIC0.79□□□□□ -2.28
LHX3Q9UBR4 DEFB108E-201ENST00000524692 240 ntBASIC0.79□□□□□ -2.28
LHX3Q9UBR4 AC008507.4-201ENST00000585464 127 ntBASIC0.79□□□□□ -2.28
LHX3Q9UBR4 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.79□□□□□ -2.28
LHX3Q9UBR4 RNU6-899P-201ENST00000363947 107 ntBASIC0.78□□□□□ -2.28
LHX3Q9UBR4 Y_RNA.527-201ENST00000384573 102 ntBASIC0.78□□□□□ -2.28
LHX3Q9UBR4 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.78□□□□□ -2.28
LHX3Q9UBR4 AC004941.2-201ENST00000427009 228 ntBASIC0.78□□□□□ -2.28
LHX3Q9UBR4 MTCO2P12-201ENST00000427426 682 ntBASIC0.78□□□□□ -2.28
LHX3Q9UBR4 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms