Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 MIR4300-201ENST00000581016 96 ntBASIC0.84□□□□□ -2.27
VPS54Q9P1Q0 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.84□□□□□ -2.27
VPS54Q9P1Q0 MIR6866-201ENST00000638146 69 ntBASIC0.84□□□□□ -2.27
VPS54Q9P1Q0 Y_RNA.418-201ENST00000384029 102 ntBASIC0.83□□□□□ -2.28
VPS54Q9P1Q0 RNU6-474P-201ENST00000384243 107 ntBASIC0.83□□□□□ -2.28
VPS54Q9P1Q0 SNORD38C-201ENST00000384381 69 ntBASIC0.83□□□□□ -2.28
VPS54Q9P1Q0 MIR802-201ENST00000390235 94 ntBASIC0.83□□□□□ -2.28
VPS54Q9P1Q0 RNU2-64P-201ENST00000411315 191 ntBASIC0.83□□□□□ -2.28
VPS54Q9P1Q0 AC022028.1-201ENST00000412054 408 ntBASIC0.83□□□□□ -2.28
VPS54Q9P1Q0 RNU6-437P-201ENST00000459408 95 ntBASIC0.83□□□□□ -2.28
VPS54Q9P1Q0 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.83□□□□□ -2.28
VPS54Q9P1Q0 RNU6-897P-201ENST00000517135 105 ntBASIC0.83□□□□□ -2.28
VPS54Q9P1Q0 MIR376A1-201ENST00000616574 68 ntBASIC0.83□□□□□ -2.28
VPS54Q9P1Q0 SEPT14P17-201ENST00000617978 177 ntBASIC0.83□□□□□ -2.28
VPS54Q9P1Q0 AC007742.2-201ENST00000618226 398 ntBASIC0.83□□□□□ -2.28
VPS54Q9P1Q0 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.83□□□□□ -2.28
VPS54Q9P1Q0 Y_RNA.222-201ENST00000364264 102 ntBASIC0.82□□□□□ -2.28
VPS54Q9P1Q0 RNU6-442P-201ENST00000383968 104 ntBASIC0.82□□□□□ -2.28
VPS54Q9P1Q0 Y_RNA.445-201ENST00000384168 102 ntBASIC0.82□□□□□ -2.28
VPS54Q9P1Q0 MIR570-201ENST00000384917 97 ntBASIC0.82□□□□□ -2.28
VPS54Q9P1Q0 MIR146A-201ENST00000385201 99 ntBASIC0.82□□□□□ -2.28
VPS54Q9P1Q0 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.82□□□□□ -2.28
VPS54Q9P1Q0 SNORD72-201ENST00000390994 80 ntBASIC0.82□□□□□ -2.28
VPS54Q9P1Q0 RNU6-823P-201ENST00000391042 103 ntBASIC0.82□□□□□ -2.28
VPS54Q9P1Q0 MTCO2P33-201ENST00000402100 465 ntBASIC0.82□□□□□ -2.28
VPS54Q9P1Q0 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.82□□□□□ -2.28
VPS54Q9P1Q0 SNRPGP14-201ENST00000435400 219 ntBASIC0.82□□□□□ -2.28
VPS54Q9P1Q0 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.82□□□□□ -2.28
VPS54Q9P1Q0 RN7SKP164-201ENST00000516138 266 ntBASIC0.82□□□□□ -2.28
VPS54Q9P1Q0 Y_RNA.715-201ENST00000517082 110 ntBASIC0.82□□□□□ -2.28
VPS54Q9P1Q0 CYP3A137P-201ENST00000562436 69 ntBASIC0.82□□□□□ -2.28
VPS54Q9P1Q0 AC131055.1-201ENST00000584626 316 ntBASIC0.82□□□□□ -2.28
VPS54Q9P1Q0 RAC1P9-201ENST00000604990 392 ntBASIC0.82□□□□□ -2.28
VPS54Q9P1Q0 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.82□□□□□ -2.28
VPS54Q9P1Q0 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
VPS54Q9P1Q0 MTND4P29-201ENST00000503122 1372 ntBASIC0.82□□□□□ -2.28
VPS54Q9P1Q0 AL442644.1-201ENST00000454390 3105 ntBASIC0.81□□□□□ -2.28
VPS54Q9P1Q0 RNU6-674P-201ENST00000363831 107 ntBASIC0.81□□□□□ -2.28
VPS54Q9P1Q0 Y_RNA.183-201ENST00000363882 113 ntBASIC0.81□□□□□ -2.28
VPS54Q9P1Q0 RNU6-268P-201ENST00000364174 107 ntBASIC0.81□□□□□ -2.28
VPS54Q9P1Q0 SNORD115-46-201ENST00000390982 71 ntBASIC0.81□□□□□ -2.28
VPS54Q9P1Q0 RPS3AP1-201ENST00000413190 320 ntBASIC0.81□□□□□ -2.28
VPS54Q9P1Q0 HSPE1P25-201ENST00000455484 251 ntBASIC0.81□□□□□ -2.28
VPS54Q9P1Q0 RNU6-197P-201ENST00000516680 100 ntBASIC0.81□□□□□ -2.28
VPS54Q9P1Q0 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.81□□□□□ -2.28
VPS54Q9P1Q0 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.81□□□□□ -2.28
VPS54Q9P1Q0 AP001094.1-201ENST00000579805 193 ntBASIC0.81□□□□□ -2.28
VPS54Q9P1Q0 MIR2681-201ENST00000581814 105 ntBASIC0.81□□□□□ -2.28
VPS54Q9P1Q0 AC008507.4-201ENST00000585464 127 ntBASIC0.81□□□□□ -2.28
VPS54Q9P1Q0 AC087685.1-201ENST00000587507 141 ntBASIC0.81□□□□□ -2.28
VPS54Q9P1Q0 AC005357.1-201ENST00000588399 301 ntBASIC0.81□□□□□ -2.28
VPS54Q9P1Q0 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.81□□□□□ -2.28
VPS54Q9P1Q0 C8orf59P2-201ENST00000603441 271 ntBASIC0.81□□□□□ -2.28
VPS54Q9P1Q0 Pinc.1-201ENST00000616452 154 ntBASIC0.81□□□□□ -2.28
VPS54Q9P1Q0 AC090574.1-201ENST00000623186 233 ntBASIC0.81□□□□□ -2.28
VPS54Q9P1Q0 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.81□□□□□ -2.28
VPS54Q9P1Q0 Y_RNA.28-201ENST00000362554 111 ntBASIC0.8□□□□□ -2.28
VPS54Q9P1Q0 Y_RNA.389-201ENST00000383924 113 ntBASIC0.8□□□□□ -2.28
VPS54Q9P1Q0 MIR608-201ENST00000384820 100 ntBASIC0.8□□□□□ -2.28
VPS54Q9P1Q0 RNU6-1248P-201ENST00000391096 64 ntBASIC0.8□□□□□ -2.28
VPS54Q9P1Q0 PSMC1P5-201ENST00000512850 177 ntBASIC0.8□□□□□ -2.28
VPS54Q9P1Q0 RNU6-496P-201ENST00000516145 99 ntBASIC0.8□□□□□ -2.28
VPS54Q9P1Q0 RNU6-764P-201ENST00000516396 105 ntBASIC0.8□□□□□ -2.28
VPS54Q9P1Q0 AC109810.1-201ENST00000534066 224 ntBASIC0.8□□□□□ -2.28
VPS54Q9P1Q0 AC106800.4-201ENST00000614905 153 ntBASIC0.8□□□□□ -2.28
VPS54Q9P1Q0 MIR6835-201ENST00000621552 64 ntBASIC0.8□□□□□ -2.28
VPS54Q9P1Q0 AC008133.2-201ENST00000624540 351 ntBASIC0.8□□□□□ -2.28
VPS54Q9P1Q0 MIR4251-201ENST00000635819 61 ntBASIC0.8□□□□□ -2.28
VPS54Q9P1Q0 Y_RNA.105-201ENST00000363182 111 ntBASIC0.79□□□□□ -2.28
VPS54Q9P1Q0 Y_RNA.394-201ENST00000383942 103 ntBASIC0.79□□□□□ -2.28
VPS54Q9P1Q0 Y_RNA.569-201ENST00000384749 103 ntBASIC0.79□□□□□ -2.28
VPS54Q9P1Q0 RNU6-763P-201ENST00000390865 106 ntBASIC0.79□□□□□ -2.28
VPS54Q9P1Q0 U8.17-201ENST00000391292 132 ntBASIC0.79□□□□□ -2.28
VPS54Q9P1Q0 AL603910.2-201ENST00000407268 136 ntBASIC0.79□□□□□ -2.28
VPS54Q9P1Q0 MIR1302-7-201ENST00000408841 72 ntBASIC0.79□□□□□ -2.28
VPS54Q9P1Q0 MIR1252-201ENST00000408861 65 ntBASIC0.79□□□□□ -2.28
VPS54Q9P1Q0 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.79□□□□□ -2.28
VPS54Q9P1Q0 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.79□□□□□ -2.28
VPS54Q9P1Q0 MRPS35P2-201ENST00000508242 191 ntBASIC0.79□□□□□ -2.28
VPS54Q9P1Q0 RNA5SP255-201ENST00000516370 107 ntBASIC0.79□□□□□ -2.28
VPS54Q9P1Q0 RNU7-181P-201ENST00000517234 74 ntBASIC0.79□□□□□ -2.28
VPS54Q9P1Q0 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.79□□□□□ -2.28
VPS54Q9P1Q0 RNA5SP48-201ENST00000363969 126 ntBASIC0.78□□□□□ -2.28
VPS54Q9P1Q0 SNORA63.7-201ENST00000365579 123 ntBASIC0.78□□□□□ -2.28
VPS54Q9P1Q0 MIR508-201ENST00000384857 115 ntBASIC0.78□□□□□ -2.28
VPS54Q9P1Q0 MIR605-201ENST00000385078 83 ntBASIC0.78□□□□□ -2.28
VPS54Q9P1Q0 MIR548J-201ENST00000408833 112 ntBASIC0.78□□□□□ -2.28
VPS54Q9P1Q0 RNU6-101P-201ENST00000410323 104 ntBASIC0.78□□□□□ -2.28
VPS54Q9P1Q0 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.78□□□□□ -2.28
VPS54Q9P1Q0 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.78□□□□□ -2.28
VPS54Q9P1Q0 AL606490.4-201ENST00000423117 127 ntBASIC0.78□□□□□ -2.28
VPS54Q9P1Q0 SNORD11-201ENST00000459124 84 ntBASIC0.78□□□□□ -2.28
VPS54Q9P1Q0 AC098869.1-201ENST00000481627 292 ntBASIC0.78□□□□□ -2.28
VPS54Q9P1Q0 RNU6-830P-201ENST00000516353 107 ntBASIC0.78□□□□□ -2.28
VPS54Q9P1Q0 MIR6788-201ENST00000618842 66 ntBASIC0.78□□□□□ -2.28
VPS54Q9P1Q0 AC023934.1-201ENST00000574529 2389 ntBASIC0.77□□□□□ -2.29
VPS54Q9P1Q0 Y_RNA.136-201ENST00000363444 102 ntBASIC0.77□□□□□ -2.29
VPS54Q9P1Q0 RNU6-899P-201ENST00000363947 107 ntBASIC0.77□□□□□ -2.29
VPS54Q9P1Q0 RNU6-654P-201ENST00000364373 107 ntBASIC0.77□□□□□ -2.29
VPS54Q9P1Q0 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 129.2 ms