Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 SNORA18.4-201ENST00000516440 124 ntBASIC2□□□□□ -2.09
VSX1Q9NZR4 SNORA31.10-201ENST00000516482 106 ntBASIC2□□□□□ -2.09
VSX1Q9NZR4 MIR4709-201ENST00000577272 72 ntBASIC2□□□□□ -2.09
VSX1Q9NZR4 MIR4448-201ENST00000584360 86 ntBASIC2□□□□□ -2.09
VSX1Q9NZR4 AC131055.1-201ENST00000584626 316 ntBASIC2□□□□□ -2.09
VSX1Q9NZR4 AC009831.4-201ENST00000620744 325 ntBASIC2□□□□□ -2.09
VSX1Q9NZR4 ZNF720P1-201ENST00000562403 1939 ntBASIC1.99□□□□□ -2.09
VSX1Q9NZR4 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
VSX1Q9NZR4 RNU6-833P-201ENST00000363486 107 ntBASIC1.99□□□□□ -2.09
VSX1Q9NZR4 Y_RNA.410-201ENST00000383992 113 ntBASIC1.99□□□□□ -2.09
VSX1Q9NZR4 SNORD72-201ENST00000390994 80 ntBASIC1.99□□□□□ -2.09
VSX1Q9NZR4 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.99□□□□□ -2.09
VSX1Q9NZR4 RNU7-197P-201ENST00000458836 62 ntBASIC1.99□□□□□ -2.09
VSX1Q9NZR4 SNORA25.12-201ENST00000516202 82 ntBASIC1.99□□□□□ -2.09
VSX1Q9NZR4 AL513423.1-201ENST00000621695 132 ntBASIC1.99□□□□□ -2.09
VSX1Q9NZR4 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
VSX1Q9NZR4 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
VSX1Q9NZR4 AL157777.2-201ENST00000258070 137 ntBASIC1.98□□□□□ -2.09
VSX1Q9NZR4 Y_RNA.120-201ENST00000363304 110 ntBASIC1.98□□□□□ -2.09
VSX1Q9NZR4 SNORD18B-201ENST00000365659 72 ntBASIC1.98□□□□□ -2.09
VSX1Q9NZR4 SNORD38C-201ENST00000384381 69 ntBASIC1.98□□□□□ -2.09
VSX1Q9NZR4 RNU6-163P-201ENST00000384396 106 ntBASIC1.98□□□□□ -2.09
VSX1Q9NZR4 Y_RNA.586-201ENST00000391146 98 ntBASIC1.98□□□□□ -2.09
VSX1Q9NZR4 RNU6-588P-201ENST00000410281 105 ntBASIC1.98□□□□□ -2.09
VSX1Q9NZR4 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.98□□□□□ -2.09
VSX1Q9NZR4 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.98□□□□□ -2.09
VSX1Q9NZR4 PGBD4P5-201ENST00000445958 426 ntBASIC1.98□□□□□ -2.09
VSX1Q9NZR4 snoU13.27-201ENST00000459278 104 ntBASIC1.98□□□□□ -2.09
VSX1Q9NZR4 UBE2DNL-203ENST00000474922 222 ntBASIC1.98□□□□□ -2.09
VSX1Q9NZR4 RPL23AP63-201ENST00000498752 471 ntBASIC1.98□□□□□ -2.09
VSX1Q9NZR4 RNU6-426P-201ENST00000516464 97 ntBASIC1.98□□□□□ -2.09
VSX1Q9NZR4 AC134878.1-201ENST00000619901 243 ntBASIC1.98□□□□□ -2.09
VSX1Q9NZR4 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
VSX1Q9NZR4 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
VSX1Q9NZR4 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.97□□□□□ -2.09
VSX1Q9NZR4 Y_RNA.251-201ENST00000364551 99 ntBASIC1.97□□□□□ -2.09
VSX1Q9NZR4 SNORD61-201ENST00000384252 73 ntBASIC1.97□□□□□ -2.09
VSX1Q9NZR4 RNU6-1117P-201ENST00000384525 104 ntBASIC1.97□□□□□ -2.09
VSX1Q9NZR4 SNORA48.3-201ENST00000391081 134 ntBASIC1.97□□□□□ -2.09
VSX1Q9NZR4 MIR891A-201ENST00000401237 79 ntBASIC1.97□□□□□ -2.09
VSX1Q9NZR4 RNA5SP100-201ENST00000410903 110 ntBASIC1.97□□□□□ -2.09
VSX1Q9NZR4 RNA5SP59-201ENST00000410922 110 ntBASIC1.97□□□□□ -2.09
VSX1Q9NZR4 AL158823.1-201ENST00000418441 478 ntBASIC1.97□□□□□ -2.09
VSX1Q9NZR4 MTATP6P21-201ENST00000440681 189 ntBASIC1.97□□□□□ -2.09
VSX1Q9NZR4 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.97□□□□□ -2.09
VSX1Q9NZR4 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.97□□□□□ -2.09
VSX1Q9NZR4 AC092991.1-201ENST00000477176 376 ntBASIC1.97□□□□□ -2.09
VSX1Q9NZR4 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC1.97□□□□□ -2.09
VSX1Q9NZR4 AC008413.1-201ENST00000511864 177 ntBASIC1.97□□□□□ -2.09
VSX1Q9NZR4 RNU6-693P-201ENST00000516134 107 ntBASIC1.97□□□□□ -2.09
VSX1Q9NZR4 RNU6-830P-201ENST00000516353 107 ntBASIC1.97□□□□□ -2.09
VSX1Q9NZR4 RNA5SP200-201ENST00000516360 103 ntBASIC1.97□□□□□ -2.09
VSX1Q9NZR4 RNA5SP281-201ENST00000516504 135 ntBASIC1.97□□□□□ -2.09
VSX1Q9NZR4 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.97□□□□□ -2.09
VSX1Q9NZR4 AP001328.1-201ENST00000528550 176 ntBASIC1.97□□□□□ -2.09
VSX1Q9NZR4 AL096840.1-201ENST00000603287 93 ntBASIC1.97□□□□□ -2.09
VSX1Q9NZR4 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.97□□□□□ -2.09
VSX1Q9NZR4 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.97□□□□□ -2.09
VSX1Q9NZR4 MIRLET7C-201ENST00000362160 84 ntBASIC1.96□□□□□ -2.1
VSX1Q9NZR4 RNU4-82P-201ENST00000362443 140 ntBASIC1.96□□□□□ -2.1
VSX1Q9NZR4 RNU6-268P-201ENST00000364174 107 ntBASIC1.96□□□□□ -2.1
VSX1Q9NZR4 RNU6-424P-201ENST00000384367 105 ntBASIC1.96□□□□□ -2.1
VSX1Q9NZR4 MIR221-201ENST00000385135 110 ntBASIC1.96□□□□□ -2.1
VSX1Q9NZR4 MIR634-201ENST00000385208 97 ntBASIC1.96□□□□□ -2.1
VSX1Q9NZR4 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC1.96□□□□□ -2.1
VSX1Q9NZR4 SNRPGP14-201ENST00000435400 219 ntBASIC1.96□□□□□ -2.1
VSX1Q9NZR4 AC087499.4-201ENST00000448505 178 ntBASIC1.96□□□□□ -2.1
VSX1Q9NZR4 RNU6-62P-201ENST00000516526 102 ntBASIC1.96□□□□□ -2.1
VSX1Q9NZR4 SCARNA16.3-201ENST00000516595 184 ntBASIC1.96□□□□□ -2.1
VSX1Q9NZR4 Y_RNA.757-201ENST00000578934 114 ntBASIC1.96□□□□□ -2.1
VSX1Q9NZR4 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.96□□□□□ -2.1
VSX1Q9NZR4 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
VSX1Q9NZR4 RNU6-1082P-201ENST00000364574 107 ntBASIC1.95□□□□□ -2.1
VSX1Q9NZR4 Y_RNA.420-201ENST00000384043 110 ntBASIC1.95□□□□□ -2.1
VSX1Q9NZR4 RNU6-959P-201ENST00000384671 107 ntBASIC1.95□□□□□ -2.1
VSX1Q9NZR4 SNORA19-201ENST00000384737 128 ntBASIC1.95□□□□□ -2.1
VSX1Q9NZR4 MIR23A-201ENST00000385245 73 ntBASIC1.95□□□□□ -2.1
VSX1Q9NZR4 MIR548I2-201ENST00000408348 149 ntBASIC1.95□□□□□ -2.1
VSX1Q9NZR4 RNU6-257P-201ENST00000410238 98 ntBASIC1.95□□□□□ -2.1
VSX1Q9NZR4 AL606753.1-201ENST00000427435 87 ntBASIC1.95□□□□□ -2.1
VSX1Q9NZR4 HSPE1P9-201ENST00000440046 311 ntBASIC1.95□□□□□ -2.1
VSX1Q9NZR4 AC114811.1-201ENST00000507207 168 ntBASIC1.95□□□□□ -2.1
VSX1Q9NZR4 Y_RNA.666-201ENST00000516187 112 ntBASIC1.95□□□□□ -2.1
VSX1Q9NZR4 RNA5SP168-201ENST00000516642 112 ntBASIC1.95□□□□□ -2.1
VSX1Q9NZR4 RNA5SP437-201ENST00000517249 129 ntBASIC1.95□□□□□ -2.1
VSX1Q9NZR4 AC007751.1-201ENST00000529260 376 ntBASIC1.95□□□□□ -2.1
VSX1Q9NZR4 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.95□□□□□ -2.1
VSX1Q9NZR4 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.95□□□□□ -2.1
VSX1Q9NZR4 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.95□□□□□ -2.1
VSX1Q9NZR4 U7.2-201ENST00000607576 63 ntBASIC1.95□□□□□ -2.1
VSX1Q9NZR4 MIR6132-201ENST00000622083 109 ntBASIC1.95□□□□□ -2.1
VSX1Q9NZR4 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.95□□□□□ -2.1
VSX1Q9NZR4 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
VSX1Q9NZR4 RNU6-1081P-201ENST00000384537 107 ntBASIC1.94□□□□□ -2.1
VSX1Q9NZR4 MIR452-201ENST00000385020 85 ntBASIC1.94□□□□□ -2.1
VSX1Q9NZR4 MIR548O-201ENST00000408583 114 ntBASIC1.94□□□□□ -2.1
VSX1Q9NZR4 SNORA59A-201ENST00000459326 152 ntBASIC1.94□□□□□ -2.1
VSX1Q9NZR4 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.94□□□□□ -2.1
VSX1Q9NZR4 MIR548AI-201ENST00000579940 88 ntBASIC1.94□□□□□ -2.1
VSX1Q9NZR4 MIR5002-201ENST00000584713 97 ntBASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 186.1 ms