Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 uc_338.4-201ENST00000616635 176 ntBASIC1.19□□□□□ -2.22
CHMP1AQ9HD42 U6.104-201ENST00000637979 90 ntBASIC1.19□□□□□ -2.22
CHMP1AQ9HD42 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.19□□□□□ -2.22
CHMP1AQ9HD42 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 Y_RNA.14-201ENST00000362415 103 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 Y_RNA.82-201ENST00000363000 102 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 Y_RNA.92-201ENST00000363043 102 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 Y_RNA.235-201ENST00000364412 102 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 Y_RNA.306-201ENST00000365015 102 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 Y_RNA.312-201ENST00000365089 102 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 Y_RNA.322-201ENST00000365151 102 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 SNORD38C-201ENST00000384381 69 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 MIR520C-201ENST00000385005 87 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 MIR15B-201ENST00000385045 98 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 RNU6-910P-201ENST00000390844 107 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 Y_RNA.650-201ENST00000459002 102 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 MTCO2P24-201ENST00000515611 426 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 RNU1-41P-201ENST00000516161 162 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 RNU6-830P-201ENST00000516353 107 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 RNU1-48P-201ENST00000516400 162 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 RNU6-1007P-201ENST00000516586 107 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 RNU7-149P-201ENST00000516739 59 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 Y_RNA.777-201ENST00000516982 102 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 MIR4764-201ENST00000580680 88 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 MIR3683-201ENST00000580847 82 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 Y_RNA.771-201ENST00000598668 102 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 Y_RNA.789-201ENST00000622480 102 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 AC027335.2-201ENST00000624030 375 ntBASIC1.18□□□□□ -2.22
CHMP1AQ9HD42 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.17□□□□□ -2.22
CHMP1AQ9HD42 Y_RNA.24-201ENST00000362508 103 ntBASIC1.17□□□□□ -2.22
CHMP1AQ9HD42 RNU6-60P-201ENST00000364792 103 ntBASIC1.17□□□□□ -2.22
CHMP1AQ9HD42 SNORA25-201ENST00000384384 134 ntBASIC1.17□□□□□ -2.22
CHMP1AQ9HD42 SNORD13-201ENST00000459299 104 ntBASIC1.17□□□□□ -2.22
CHMP1AQ9HD42 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.17□□□□□ -2.22
CHMP1AQ9HD42 RPL23AP94-201ENST00000512518 302 ntBASIC1.17□□□□□ -2.22
CHMP1AQ9HD42 RN7SKP164-201ENST00000516138 266 ntBASIC1.17□□□□□ -2.22
CHMP1AQ9HD42 RNU1-92P-201ENST00000517017 135 ntBASIC1.17□□□□□ -2.22
CHMP1AQ9HD42 MIR4643-201ENST00000577473 78 ntBASIC1.17□□□□□ -2.22
CHMP1AQ9HD42 MIR548AR-201ENST00000582191 57 ntBASIC1.17□□□□□ -2.22
CHMP1AQ9HD42 AC012433.1-201ENST00000588916 398 ntBASIC1.17□□□□□ -2.22
CHMP1AQ9HD42 AL391903.3-201ENST00000612158 163 ntBASIC1.17□□□□□ -2.22
CHMP1AQ9HD42 Pinc.1-201ENST00000616452 154 ntBASIC1.17□□□□□ -2.22
CHMP1AQ9HD42 U8.1-201ENST00000362843 134 ntBASIC1.16□□□□□ -2.22
CHMP1AQ9HD42 RNU6-939P-201ENST00000384634 107 ntBASIC1.16□□□□□ -2.22
CHMP1AQ9HD42 MIR626-201ENST00000385032 94 ntBASIC1.16□□□□□ -2.22
CHMP1AQ9HD42 MIR758-201ENST00000390227 88 ntBASIC1.16□□□□□ -2.22
CHMP1AQ9HD42 SNORD28B-201ENST00000390993 75 ntBASIC1.16□□□□□ -2.22
CHMP1AQ9HD42 MTCYBP9-201ENST00000431021 303 ntBASIC1.16□□□□□ -2.22
CHMP1AQ9HD42 RPS26P48-201ENST00000491713 339 ntBASIC1.16□□□□□ -2.22
CHMP1AQ9HD42 SNORA31.4-201ENST00000516049 129 ntBASIC1.16□□□□□ -2.22
CHMP1AQ9HD42 RNU6-1045P-201ENST00000516321 107 ntBASIC1.16□□□□□ -2.22
CHMP1AQ9HD42 SNORA70.22-201ENST00000517160 124 ntBASIC1.16□□□□□ -2.22
CHMP1AQ9HD42 AC100767.1-201ENST00000528178 123 ntBASIC1.16□□□□□ -2.22
CHMP1AQ9HD42 MIR5688-201ENST00000580619 83 ntBASIC1.16□□□□□ -2.22
CHMP1AQ9HD42 MIR4282-201ENST00000583613 67 ntBASIC1.16□□□□□ -2.22
CHMP1AQ9HD42 AC006006.1-201ENST00000603082 144 ntBASIC1.16□□□□□ -2.22
CHMP1AQ9HD42 PRELID3BP2-201ENST00000605362 201 ntBASIC1.16□□□□□ -2.22
CHMP1AQ9HD42 BX284668.6-201ENST00000606899 438 ntBASIC1.16□□□□□ -2.22
CHMP1AQ9HD42 Y_RNA.122-201ENST00000363331 96 ntBASIC1.15□□□□□ -2.23
CHMP1AQ9HD42 Y_RNA.229-201ENST00000364347 113 ntBASIC1.15□□□□□ -2.23
CHMP1AQ9HD42 RNU6-1138P-201ENST00000365359 106 ntBASIC1.15□□□□□ -2.23
CHMP1AQ9HD42 SNORA8.3-201ENST00000384679 139 ntBASIC1.15□□□□□ -2.23
CHMP1AQ9HD42 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
CHMP1AQ9HD42 RNU2-38P-201ENST00000410856 79 ntBASIC1.15□□□□□ -2.23
CHMP1AQ9HD42 AC023449.1-201ENST00000454464 154 ntBASIC1.15□□□□□ -2.23
CHMP1AQ9HD42 SNORD127-201ENST00000458892 86 ntBASIC1.15□□□□□ -2.23
CHMP1AQ9HD42 SNORD77.4-201ENST00000516158 81 ntBASIC1.15□□□□□ -2.23
CHMP1AQ9HD42 RNU7-43P-201ENST00000516554 64 ntBASIC1.15□□□□□ -2.23
CHMP1AQ9HD42 AP003716.2-201ENST00000528260 108 ntBASIC1.15□□□□□ -2.23
CHMP1AQ9HD42 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.15□□□□□ -2.23
CHMP1AQ9HD42 MIR7843-201ENST00000622274 79 ntBASIC1.15□□□□□ -2.23
CHMP1AQ9HD42 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.15□□□□□ -2.23
CHMP1AQ9HD42 Y_RNA.242-201ENST00000364473 110 ntBASIC1.14□□□□□ -2.23
CHMP1AQ9HD42 MIR618-201ENST00000385287 98 ntBASIC1.14□□□□□ -2.23
CHMP1AQ9HD42 Y_RNA.590-201ENST00000410140 107 ntBASIC1.14□□□□□ -2.23
CHMP1AQ9HD42 CYCSP49-201ENST00000420810 319 ntBASIC1.14□□□□□ -2.23
CHMP1AQ9HD42 SNORD79.1-201ENST00000516069 84 ntBASIC1.14□□□□□ -2.23
CHMP1AQ9HD42 SNORD116-28-201ENST00000516123 91 ntBASIC1.14□□□□□ -2.23
CHMP1AQ9HD42 RN7SKP179-201ENST00000516126 217 ntBASIC1.14□□□□□ -2.23
CHMP1AQ9HD42 RNA5SP404-201ENST00000517118 132 ntBASIC1.14□□□□□ -2.23
CHMP1AQ9HD42 AL353621.2-201ENST00000605340 133 ntBASIC1.14□□□□□ -2.23
CHMP1AQ9HD42 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.14□□□□□ -2.23
CHMP1AQ9HD42 AC015726.2-201ENST00000620112 122 ntBASIC1.14□□□□□ -2.23
CHMP1AQ9HD42 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.14□□□□□ -2.23
CHMP1AQ9HD42 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
CHMP1AQ9HD42 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.13□□□□□ -2.23
CHMP1AQ9HD42 SNORA25.8-201ENST00000364831 128 ntBASIC1.13□□□□□ -2.23
CHMP1AQ9HD42 Y_RNA.352-201ENST00000365439 102 ntBASIC1.13□□□□□ -2.23
CHMP1AQ9HD42 Y_RNA.486-201ENST00000384398 107 ntBASIC1.13□□□□□ -2.23
CHMP1AQ9HD42 Y_RNA.587-201ENST00000391210 103 ntBASIC1.13□□□□□ -2.23
CHMP1AQ9HD42 U8.17-201ENST00000391292 132 ntBASIC1.13□□□□□ -2.23
CHMP1AQ9HD42 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.13□□□□□ -2.23
CHMP1AQ9HD42 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.13□□□□□ -2.23
CHMP1AQ9HD42 RNU4-57P-201ENST00000515980 135 ntBASIC1.13□□□□□ -2.23
CHMP1AQ9HD42 RNU7-25P-201ENST00000516544 62 ntBASIC1.13□□□□□ -2.23
CHMP1AQ9HD42 RNU6-548P-201ENST00000517083 115 ntBASIC1.13□□□□□ -2.23
CHMP1AQ9HD42 RNU7-181P-201ENST00000517234 74 ntBASIC1.13□□□□□ -2.23
CHMP1AQ9HD42 AL645939.4-201ENST00000604495 135 ntBASIC1.13□□□□□ -2.23
CHMP1AQ9HD42 SNORA25.3-201ENST00000363205 127 ntBASIC1.12□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 148.6 ms