Protein–RNA interactions for Protein: Q9H9Y2

RPF1, Ribosome production factor 1, humanhuman

Known RBP Predictions only

Length 349 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPF1Q9H9Y2 RNU1-93P-201ENST00000364704 169 ntBASIC1.09□□□□□ -2.23
RPF1Q9H9Y2 Y_RNA.276-201ENST00000364732 109 ntBASIC1.09□□□□□ -2.23
RPF1Q9H9Y2 snoU2-30.1-201ENST00000365012 70 ntBASIC1.09□□□□□ -2.23
RPF1Q9H9Y2 RNU6-290P-201ENST00000365212 101 ntBASIC1.09□□□□□ -2.23
RPF1Q9H9Y2 RNU6-1227P-201ENST00000383981 107 ntBASIC1.09□□□□□ -2.23
RPF1Q9H9Y2 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.09□□□□□ -2.23
RPF1Q9H9Y2 AC245047.7-201ENST00000440265 293 ntBASIC1.09□□□□□ -2.23
RPF1Q9H9Y2 U8.19-201ENST00000459095 133 ntBASIC1.09□□□□□ -2.23
RPF1Q9H9Y2 RNU6-437P-201ENST00000459408 95 ntBASIC1.09□□□□□ -2.23
RPF1Q9H9Y2 SNORA31.4-201ENST00000516049 129 ntBASIC1.09□□□□□ -2.23
RPF1Q9H9Y2 SNORD111.1-201ENST00000516421 86 ntBASIC1.09□□□□□ -2.23
RPF1Q9H9Y2 RNU6-113P-201ENST00000516653 101 ntBASIC1.09□□□□□ -2.23
RPF1Q9H9Y2 SNORA70.22-201ENST00000517160 124 ntBASIC1.09□□□□□ -2.23
RPF1Q9H9Y2 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.09□□□□□ -2.23
RPF1Q9H9Y2 SNORA4-201ENST00000584302 138 ntBASIC1.09□□□□□ -2.23
RPF1Q9H9Y2 AL357312.1-201ENST00000603879 298 ntBASIC1.09□□□□□ -2.23
RPF1Q9H9Y2 MIR6734-201ENST00000621166 68 ntBASIC1.09□□□□□ -2.23
RPF1Q9H9Y2 Y_RNA.16-201ENST00000362421 102 ntBASIC1.08□□□□□ -2.24
RPF1Q9H9Y2 RNU6-910P-201ENST00000390844 107 ntBASIC1.08□□□□□ -2.24
RPF1Q9H9Y2 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.08□□□□□ -2.24
RPF1Q9H9Y2 MTND5P22-201ENST00000458380 195 ntBASIC1.08□□□□□ -2.24
RPF1Q9H9Y2 Y_RNA.637-201ENST00000459424 114 ntBASIC1.08□□□□□ -2.24
RPF1Q9H9Y2 OR2A41P-201ENST00000473586 105 ntBASIC1.08□□□□□ -2.24
RPF1Q9H9Y2 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.08□□□□□ -2.24
RPF1Q9H9Y2 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.08□□□□□ -2.24
RPF1Q9H9Y2 AC044792.1-201ENST00000593294 196 ntBASIC1.08□□□□□ -2.24
RPF1Q9H9Y2 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
RPF1Q9H9Y2 HSPE1P19-201ENST00000603327 295 ntBASIC1.08□□□□□ -2.24
RPF1Q9H9Y2 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
RPF1Q9H9Y2 AL442644.1-201ENST00000454390 3105 ntBASIC1.07□□□□□ -2.24
RPF1Q9H9Y2 MIR520E-201ENST00000384867 87 ntBASIC1.07□□□□□ -2.24
RPF1Q9H9Y2 RNU6-1248P-201ENST00000391096 64 ntBASIC1.07□□□□□ -2.24
RPF1Q9H9Y2 RNU6-985P-201ENST00000410182 104 ntBASIC1.07□□□□□ -2.24
RPF1Q9H9Y2 AC005534.2-201ENST00000431047 433 ntBASIC1.07□□□□□ -2.24
RPF1Q9H9Y2 SNORA74.3-201ENST00000517108 154 ntBASIC1.07□□□□□ -2.24
RPF1Q9H9Y2 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.07□□□□□ -2.24
RPF1Q9H9Y2 RNU6-674P-201ENST00000363831 107 ntBASIC1.06□□□□□ -2.24
RPF1Q9H9Y2 MIR136-201ENST00000385207 82 ntBASIC1.06□□□□□ -2.24
RPF1Q9H9Y2 AC113618.1-201ENST00000416747 285 ntBASIC1.06□□□□□ -2.24
RPF1Q9H9Y2 SNRPGP14-201ENST00000435400 219 ntBASIC1.06□□□□□ -2.24
RPF1Q9H9Y2 RPS26P48-201ENST00000491713 339 ntBASIC1.06□□□□□ -2.24
RPF1Q9H9Y2 SNORA18.7-201ENST00000516910 131 ntBASIC1.06□□□□□ -2.24
RPF1Q9H9Y2 RNU2-31P-201ENST00000516954 155 ntBASIC1.06□□□□□ -2.24
RPF1Q9H9Y2 AP003733.2-201ENST00000529409 171 ntBASIC1.06□□□□□ -2.24
RPF1Q9H9Y2 RPL23AP91-201ENST00000569211 455 ntBASIC1.06□□□□□ -2.24
RPF1Q9H9Y2 JPX_2.1-201ENST00000614161 69 ntBASIC1.06□□□□□ -2.24
RPF1Q9H9Y2 MIR7111-201ENST00000619751 72 ntBASIC1.06□□□□□ -2.24
RPF1Q9H9Y2 Y_RNA.11-201ENST00000362375 109 ntBASIC1.05□□□□□ -2.24
RPF1Q9H9Y2 RNU6-899P-201ENST00000363947 107 ntBASIC1.05□□□□□ -2.24
RPF1Q9H9Y2 SNORD72-201ENST00000390994 80 ntBASIC1.05□□□□□ -2.24
RPF1Q9H9Y2 HMGN2P32-201ENST00000444648 269 ntBASIC1.05□□□□□ -2.24
RPF1Q9H9Y2 RPL39P39-201ENST00000455840 151 ntBASIC1.05□□□□□ -2.24
RPF1Q9H9Y2 SNORD11-201ENST00000459124 84 ntBASIC1.05□□□□□ -2.24
RPF1Q9H9Y2 RPS29P1-201ENST00000465274 159 ntBASIC1.05□□□□□ -2.24
RPF1Q9H9Y2 AC091959.1-201ENST00000495857 238 ntBASIC1.05□□□□□ -2.24
RPF1Q9H9Y2 Y_RNA.714-201ENST00000517065 90 ntBASIC1.05□□□□□ -2.24
RPF1Q9H9Y2 AL391516.1-201ENST00000554380 2449 ntBASIC1.04□□□□□ -2.24
RPF1Q9H9Y2 Y_RNA.84-201ENST00000363011 104 ntBASIC1.04□□□□□ -2.24
RPF1Q9H9Y2 SNORD14E-201ENST00000364009 85 ntBASIC1.04□□□□□ -2.24
RPF1Q9H9Y2 RNU6-326P-201ENST00000365480 107 ntBASIC1.04□□□□□ -2.24
RPF1Q9H9Y2 RNU6-639P-201ENST00000384074 107 ntBASIC1.04□□□□□ -2.24
RPF1Q9H9Y2 RNU6-662P-201ENST00000384253 104 ntBASIC1.04□□□□□ -2.24
RPF1Q9H9Y2 MIR19B1-201ENST00000384829 87 ntBASIC1.04□□□□□ -2.24
RPF1Q9H9Y2 SNORD12-201ENST00000391002 90 ntBASIC1.04□□□□□ -2.24
RPF1Q9H9Y2 AL603910.2-201ENST00000407268 136 ntBASIC1.04□□□□□ -2.24
RPF1Q9H9Y2 RNU7-41P-201ENST00000515917 61 ntBASIC1.04□□□□□ -2.24
RPF1Q9H9Y2 SNORD79.1-201ENST00000516069 84 ntBASIC1.04□□□□□ -2.24
RPF1Q9H9Y2 AC008507.4-201ENST00000585464 127 ntBASIC1.04□□□□□ -2.24
RPF1Q9H9Y2 AL512605.2-201ENST00000592972 256 ntBASIC1.04□□□□□ -2.24
RPF1Q9H9Y2 PRELID3BP2-201ENST00000605362 201 ntBASIC1.04□□□□□ -2.24
RPF1Q9H9Y2 AL391903.3-201ENST00000612158 163 ntBASIC1.04□□□□□ -2.24
RPF1Q9H9Y2 AC012676.2-201ENST00000619258 186 ntBASIC1.04□□□□□ -2.24
RPF1Q9H9Y2 RNU6-1272P-201ENST00000362776 107 ntBASIC1.03□□□□□ -2.24
RPF1Q9H9Y2 RNU6-383P-201ENST00000410864 94 ntBASIC1.03□□□□□ -2.24
RPF1Q9H9Y2 AL731563.1-201ENST00000442202 214 ntBASIC1.03□□□□□ -2.24
RPF1Q9H9Y2 SNORD123-201ENST00000459473 70 ntBASIC1.03□□□□□ -2.24
RPF1Q9H9Y2 AP003072.1-201ENST00000531740 145 ntBASIC1.03□□□□□ -2.24
RPF1Q9H9Y2 AC013791.1-201ENST00000616619 62 ntBASIC1.03□□□□□ -2.24
RPF1Q9H9Y2 SNORA25.1-201ENST00000362326 128 ntBASIC1.02□□□□□ -2.25
RPF1Q9H9Y2 RNU6-1205P-201ENST00000363625 106 ntBASIC1.02□□□□□ -2.25
RPF1Q9H9Y2 MIR520C-201ENST00000385005 87 ntBASIC1.02□□□□□ -2.25
RPF1Q9H9Y2 SNORA75.2-201ENST00000391138 150 ntBASIC1.02□□□□□ -2.25
RPF1Q9H9Y2 SNORA75.3-201ENST00000391231 150 ntBASIC1.02□□□□□ -2.25
RPF1Q9H9Y2 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.02□□□□□ -2.25
RPF1Q9H9Y2 AC245047.8-201ENST00000456455 284 ntBASIC1.02□□□□□ -2.25
RPF1Q9H9Y2 MIR4764-201ENST00000580680 88 ntBASIC1.02□□□□□ -2.25
RPF1Q9H9Y2 MIR2681-201ENST00000581814 105 ntBASIC1.02□□□□□ -2.25
RPF1Q9H9Y2 AC087685.1-201ENST00000587507 141 ntBASIC1.02□□□□□ -2.25
RPF1Q9H9Y2 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.02□□□□□ -2.25
RPF1Q9H9Y2 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.02□□□□□ -2.25
RPF1Q9H9Y2 MIR6767-201ENST00000637302 66 ntBASIC1.02□□□□□ -2.25
RPF1Q9H9Y2 Y_RNA.152-201ENST00000363578 100 ntBASIC1.01□□□□□ -2.25
RPF1Q9H9Y2 RNU6-268P-201ENST00000364174 107 ntBASIC1.01□□□□□ -2.25
RPF1Q9H9Y2 Y_RNA.217-201ENST00000364214 105 ntBASIC1.01□□□□□ -2.25
RPF1Q9H9Y2 Y_RNA.512-201ENST00000384518 102 ntBASIC1.01□□□□□ -2.25
RPF1Q9H9Y2 MIR532-201ENST00000385025 91 ntBASIC1.01□□□□□ -2.25
RPF1Q9H9Y2 SNORD28B-201ENST00000390993 75 ntBASIC1.01□□□□□ -2.25
RPF1Q9H9Y2 SNORA53-201ENST00000391141 249 ntBASIC1.01□□□□□ -2.25
RPF1Q9H9Y2 RNU6-1203P-201ENST00000410703 110 ntBASIC1.01□□□□□ -2.25
RPF1Q9H9Y2 BTF3P11-201ENST00000426582 477 ntBASIC1.01□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 240.2 ms