Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 SNORA70B-201ENST00000384210 135 ntBASIC2.7□□□□□ -1.98
TRAIPQ9BWF2 SNORA3.2-201ENST00000408221 125 ntBASIC2.7□□□□□ -1.98
TRAIPQ9BWF2 MIR3144-201ENST00000579460 79 ntBASIC2.7□□□□□ -1.98
TRAIPQ9BWF2 AC103810.8-201ENST00000607347 118 ntBASIC2.7□□□□□ -1.98
TRAIPQ9BWF2 AC095038.3-201ENST00000634439 195 ntBASIC2.7□□□□□ -1.98
TRAIPQ9BWF2 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
TRAIPQ9BWF2 SNORD116-18-201ENST00000383961 92 ntBASIC2.69□□□□□ -1.98
TRAIPQ9BWF2 SNORD61-201ENST00000384252 73 ntBASIC2.69□□□□□ -1.98
TRAIPQ9BWF2 MIR516B2-201ENST00000385190 85 ntBASIC2.69□□□□□ -1.98
TRAIPQ9BWF2 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
TRAIPQ9BWF2 RNU4-53P-201ENST00000410828 140 ntBASIC2.69□□□□□ -1.98
TRAIPQ9BWF2 RPS12P2-201ENST00000439728 269 ntBASIC2.69□□□□□ -1.98
TRAIPQ9BWF2 FAM106DP-201ENST00000586416 501 ntBASIC2.69□□□□□ -1.98
TRAIPQ9BWF2 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
TRAIPQ9BWF2 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
TRAIPQ9BWF2 RNA5SP289-201ENST00000362332 137 ntBASIC2.68□□□□□ -1.98
TRAIPQ9BWF2 SNORD33-201ENST00000362761 85 ntBASIC2.68□□□□□ -1.98
TRAIPQ9BWF2 SNORA2.2-201ENST00000365473 135 ntBASIC2.68□□□□□ -1.98
TRAIPQ9BWF2 RNU6-1062P-201ENST00000383908 107 ntBASIC2.68□□□□□ -1.98
TRAIPQ9BWF2 RNU6-394P-201ENST00000410735 107 ntBASIC2.68□□□□□ -1.98
TRAIPQ9BWF2 HSPE1P24-201ENST00000450782 238 ntBASIC2.68□□□□□ -1.98
TRAIPQ9BWF2 HMGN2P23-201ENST00000456759 269 ntBASIC2.68□□□□□ -1.98
TRAIPQ9BWF2 AC008413.1-201ENST00000511864 177 ntBASIC2.68□□□□□ -1.98
TRAIPQ9BWF2 SNORA18.4-201ENST00000516440 124 ntBASIC2.68□□□□□ -1.98
TRAIPQ9BWF2 MIR3646-201ENST00000578301 84 ntBASIC2.68□□□□□ -1.98
TRAIPQ9BWF2 AC103810.6-201ENST00000606708 136 ntBASIC2.68□□□□□ -1.98
TRAIPQ9BWF2 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
TRAIPQ9BWF2 Y_RNA.66-201ENST00000362862 102 ntBASIC2.67□□□□□ -1.98
TRAIPQ9BWF2 RNU6-457P-201ENST00000363999 107 ntBASIC2.67□□□□□ -1.98
TRAIPQ9BWF2 RNU6-804P-201ENST00000384286 107 ntBASIC2.67□□□□□ -1.98
TRAIPQ9BWF2 Y_RNA.542-201ENST00000384641 111 ntBASIC2.67□□□□□ -1.98
TRAIPQ9BWF2 AL161935.2-201ENST00000414627 60 ntBASIC2.67□□□□□ -1.98
TRAIPQ9BWF2 SNRPGP14-201ENST00000435400 219 ntBASIC2.67□□□□□ -1.98
TRAIPQ9BWF2 RNU7-25P-201ENST00000516544 62 ntBASIC2.67□□□□□ -1.98
TRAIPQ9BWF2 AC090142.3-201ENST00000519012 385 ntBASIC2.67□□□□□ -1.98
TRAIPQ9BWF2 SNORA77B-201ENST00000578179 125 ntBASIC2.67□□□□□ -1.98
TRAIPQ9BWF2 AC134878.1-201ENST00000619901 243 ntBASIC2.67□□□□□ -1.98
TRAIPQ9BWF2 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.66□□□□□ -1.98
TRAIPQ9BWF2 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
TRAIPQ9BWF2 SNORD115-28-201ENST00000363931 81 ntBASIC2.66□□□□□ -1.98
TRAIPQ9BWF2 Y_RNA.580-201ENST00000391004 95 ntBASIC2.66□□□□□ -1.98
TRAIPQ9BWF2 AL445646.1-201ENST00000431784 216 ntBASIC2.66□□□□□ -1.98
TRAIPQ9BWF2 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.66□□□□□ -1.98
TRAIPQ9BWF2 AC234781.5-201ENST00000508429 271 ntBASIC2.66□□□□□ -1.98
TRAIPQ9BWF2 MIR1291-201ENST00000627649 87 ntBASIC2.66□□□□□ -1.98
TRAIPQ9BWF2 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.66□□□□□ -1.98
TRAIPQ9BWF2 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC2.66□□□□□ -1.98
TRAIPQ9BWF2 AL359851.1-201ENST00000569460 4997 ntBASIC2.66□□□□□ -1.98
TRAIPQ9BWF2 SNORA1.2-201ENST00000365189 134 ntBASIC2.65□□□□□ -1.99
TRAIPQ9BWF2 RNU6-597P-201ENST00000365620 102 ntBASIC2.65□□□□□ -1.99
TRAIPQ9BWF2 Y_RNA.547-201ENST00000384654 119 ntBASIC2.65□□□□□ -1.99
TRAIPQ9BWF2 RNU6-1067P-201ENST00000384752 107 ntBASIC2.65□□□□□ -1.99
TRAIPQ9BWF2 AL451046.2-201ENST00000403074 277 ntBASIC2.65□□□□□ -1.99
TRAIPQ9BWF2 AL356320.1-201ENST00000429616 163 ntBASIC2.65□□□□□ -1.99
TRAIPQ9BWF2 AC107297.1-201ENST00000459991 176 ntBASIC2.65□□□□□ -1.99
TRAIPQ9BWF2 RNU6-830P-201ENST00000516353 107 ntBASIC2.65□□□□□ -1.99
TRAIPQ9BWF2 RNU7-121P-201ENST00000516604 62 ntBASIC2.65□□□□□ -1.99
TRAIPQ9BWF2 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
TRAIPQ9BWF2 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
TRAIPQ9BWF2 RNU6-151P-201ENST00000364158 107 ntBASIC2.64□□□□□ -1.99
TRAIPQ9BWF2 RNU6-768P-201ENST00000384683 107 ntBASIC2.64□□□□□ -1.99
TRAIPQ9BWF2 SNORA75.5-201ENST00000391291 81 ntBASIC2.64□□□□□ -1.99
TRAIPQ9BWF2 RNA5SP181-201ENST00000410246 98 ntBASIC2.64□□□□□ -1.99
TRAIPQ9BWF2 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC2.64□□□□□ -1.99
TRAIPQ9BWF2 AC087499.4-201ENST00000448505 178 ntBASIC2.64□□□□□ -1.99
TRAIPQ9BWF2 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.64□□□□□ -1.99
TRAIPQ9BWF2 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.64□□□□□ -1.99
TRAIPQ9BWF2 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.64□□□□□ -1.99
TRAIPQ9BWF2 AC005336.3-201ENST00000623833 2679 ntBASIC2.64□□□□□ -1.99
TRAIPQ9BWF2 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
TRAIPQ9BWF2 RNU6-978P-201ENST00000364371 103 ntBASIC2.63□□□□□ -1.99
TRAIPQ9BWF2 Y_RNA.398-201ENST00000383952 99 ntBASIC2.63□□□□□ -1.99
TRAIPQ9BWF2 Y_RNA.410-201ENST00000383992 113 ntBASIC2.63□□□□□ -1.99
TRAIPQ9BWF2 SNORA67.3-201ENST00000384366 140 ntBASIC2.63□□□□□ -1.99
TRAIPQ9BWF2 RNA5SP425-201ENST00000410336 112 ntBASIC2.63□□□□□ -1.99
TRAIPQ9BWF2 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.63□□□□□ -1.99
TRAIPQ9BWF2 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2.63□□□□□ -1.99
TRAIPQ9BWF2 RNU6-1212P-201ENST00000517023 104 ntBASIC2.63□□□□□ -1.99
TRAIPQ9BWF2 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC2.63□□□□□ -1.99
TRAIPQ9BWF2 AC090049.2-201ENST00000550377 109 ntBASIC2.63□□□□□ -1.99
TRAIPQ9BWF2 MIR3129-201ENST00000581095 76 ntBASIC2.63□□□□□ -1.99
TRAIPQ9BWF2 Y_RNA.778-201ENST00000620203 90 ntBASIC2.63□□□□□ -1.99
TRAIPQ9BWF2 AC021753.1-201ENST00000635724 168 ntBASIC2.63□□□□□ -1.99
TRAIPQ9BWF2 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.63□□□□□ -1.99
TRAIPQ9BWF2 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.63□□□□□ -1.99
TRAIPQ9BWF2 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.62□□□□□ -1.99
TRAIPQ9BWF2 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
TRAIPQ9BWF2 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.62□□□□□ -1.99
TRAIPQ9BWF2 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
TRAIPQ9BWF2 RNU6-1065P-201ENST00000384513 106 ntBASIC2.62□□□□□ -1.99
TRAIPQ9BWF2 MIR513C-201ENST00000401352 84 ntBASIC2.62□□□□□ -1.99
TRAIPQ9BWF2 MIR1261-201ENST00000408659 82 ntBASIC2.62□□□□□ -1.99
TRAIPQ9BWF2 Z98742.3-201ENST00000418637 326 ntBASIC2.62□□□□□ -1.99
TRAIPQ9BWF2 AC079140.2-201ENST00000506193 142 ntBASIC2.62□□□□□ -1.99
TRAIPQ9BWF2 AC008834.1-201ENST00000511612 175 ntBASIC2.62□□□□□ -1.99
TRAIPQ9BWF2 RNA5SP402-201ENST00000517148 110 ntBASIC2.62□□□□□ -1.99
TRAIPQ9BWF2 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC2.62□□□□□ -1.99
TRAIPQ9BWF2 AC015688.6-201ENST00000577737 104 ntBASIC2.62□□□□□ -1.99
TRAIPQ9BWF2 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
TRAIPQ9BWF2 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms