Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 AC022306.2-201ENST00000617563 647 ntBASIC0.38□□□□□ -2.35
RPRD1AQ96P16 AC243994.1-201ENST00000618627 109 ntBASIC0.38□□□□□ -2.35
RPRD1AQ96P16 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.37□□□□□ -2.35
RPRD1AQ96P16 SNORD114-26-201ENST00000363543 72 ntBASIC0.37□□□□□ -2.35
RPRD1AQ96P16 SNORD45.3-201ENST00000363836 72 ntBASIC0.37□□□□□ -2.35
RPRD1AQ96P16 Y_RNA.466-201ENST00000384294 113 ntBASIC0.37□□□□□ -2.35
RPRD1AQ96P16 MIR802-201ENST00000390235 94 ntBASIC0.37□□□□□ -2.35
RPRD1AQ96P16 FCF1P9-201ENST00000412546 282 ntBASIC0.37□□□□□ -2.35
RPRD1AQ96P16 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.37□□□□□ -2.35
RPRD1AQ96P16 FGF7P6-202ENST00000451282 293 ntBASIC0.37□□□□□ -2.35
RPRD1AQ96P16 RNU7-181P-201ENST00000517234 74 ntBASIC0.37□□□□□ -2.35
RPRD1AQ96P16 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.37□□□□□ -2.35
RPRD1AQ96P16 AC005730.3-201ENST00000583067 366 ntBASIC0.37□□□□□ -2.35
RPRD1AQ96P16 MTND1P7-201ENST00000632801 297 ntBASIC0.37□□□□□ -2.35
RPRD1AQ96P16 MIR377-201ENST00000362145 69 ntBASIC0.36□□□□□ -2.35
RPRD1AQ96P16 SNORD81.1-201ENST00000363064 77 ntBASIC0.36□□□□□ -2.35
RPRD1AQ96P16 U8.7-201ENST00000364940 136 ntBASIC0.36□□□□□ -2.35
RPRD1AQ96P16 SNORD81.2-201ENST00000365153 76 ntBASIC0.36□□□□□ -2.35
RPRD1AQ96P16 VTRNA1-3-201ENST00000365645 89 ntBASIC0.36□□□□□ -2.35
RPRD1AQ96P16 MIR559-201ENST00000385188 96 ntBASIC0.36□□□□□ -2.35
RPRD1AQ96P16 MTCO2P33-201ENST00000402100 465 ntBASIC0.36□□□□□ -2.35
RPRD1AQ96P16 NDUFAF4P4-201ENST00000454883 502 ntBASIC0.36□□□□□ -2.35
RPRD1AQ96P16 RNU7-115P-201ENST00000516433 55 ntBASIC0.36□□□□□ -2.35
RPRD1AQ96P16 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC0.36□□□□□ -2.35
RPRD1AQ96P16 MIR5188-201ENST00000583467 113 ntBASIC0.36□□□□□ -2.35
RPRD1AQ96P16 AC008507.4-201ENST00000585464 127 ntBASIC0.36□□□□□ -2.35
RPRD1AQ96P16 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.36□□□□□ -2.35
RPRD1AQ96P16 RNU6-580P-201ENST00000365159 107 ntBASIC0.35□□□□□ -2.35
RPRD1AQ96P16 Y_RNA.474-201ENST00000384341 102 ntBASIC0.35□□□□□ -2.35
RPRD1AQ96P16 Y_RNA.537-201ENST00000384626 109 ntBASIC0.35□□□□□ -2.35
RPRD1AQ96P16 MT-TN-201ENST00000387400 73 ntBASIC0.35□□□□□ -2.35
RPRD1AQ96P16 MIR4791-201ENST00000607666 84 ntBASIC0.35□□□□□ -2.35
RPRD1AQ96P16 MIR548AY-201ENST00000617669 107 ntBASIC0.35□□□□□ -2.35
RPRD1AQ96P16 AC010487.4-201ENST00000637027 61 ntBASIC0.35□□□□□ -2.35
RPRD1AQ96P16 Y_RNA.331-201ENST00000365267 102 ntBASIC0.34□□□□□ -2.36
RPRD1AQ96P16 Y_RNA.376-201ENST00000365638 108 ntBASIC0.34□□□□□ -2.36
RPRD1AQ96P16 MIR520H-201ENST00000385126 88 ntBASIC0.34□□□□□ -2.36
RPRD1AQ96P16 RNU6-205P-201ENST00000390858 107 ntBASIC0.34□□□□□ -2.36
RPRD1AQ96P16 SNORD72-201ENST00000390994 80 ntBASIC0.34□□□□□ -2.36
RPRD1AQ96P16 MIR1278-201ENST00000408753 81 ntBASIC0.34□□□□□ -2.36
RPRD1AQ96P16 AC015818.7-201ENST00000428754 109 ntBASIC0.34□□□□□ -2.36
RPRD1AQ96P16 AC087499.7-201ENST00000441958 109 ntBASIC0.34□□□□□ -2.36
RPRD1AQ96P16 Y_RNA.653-201ENST00000459091 95 ntBASIC0.34□□□□□ -2.36
RPRD1AQ96P16 AC015726.2-201ENST00000620112 122 ntBASIC0.34□□□□□ -2.36
RPRD1AQ96P16 MIRLET7D-201ENST00000362263 87 ntBASIC0.33□□□□□ -2.36
RPRD1AQ96P16 MIR520F-201ENST00000384824 87 ntBASIC0.33□□□□□ -2.36
RPRD1AQ96P16 MIR193B-201ENST00000384907 83 ntBASIC0.33□□□□□ -2.36
RPRD1AQ96P16 SNORD83.1-201ENST00000411362 77 ntBASIC0.33□□□□□ -2.36
RPRD1AQ96P16 AC099799.1-201ENST00000439809 192 ntBASIC0.33□□□□□ -2.36
RPRD1AQ96P16 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC0.33□□□□□ -2.36
RPRD1AQ96P16 RNU6-559P-201ENST00000516151 98 ntBASIC0.33□□□□□ -2.36
RPRD1AQ96P16 AC006600.1-201ENST00000572529 153 ntBASIC0.33□□□□□ -2.36
RPRD1AQ96P16 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.33□□□□□ -2.36
RPRD1AQ96P16 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.33□□□□□ -2.36
RPRD1AQ96P16 MIR18A-201ENST00000362310 71 ntBASIC0.32□□□□□ -2.36
RPRD1AQ96P16 RNU6-125P-201ENST00000384505 107 ntBASIC0.32□□□□□ -2.36
RPRD1AQ96P16 AL603910.2-201ENST00000407268 136 ntBASIC0.32□□□□□ -2.36
RPRD1AQ96P16 RNU2-13P-201ENST00000515909 113 ntBASIC0.32□□□□□ -2.36
RPRD1AQ96P16 RNU6-699P-201ENST00000517081 110 ntBASIC0.32□□□□□ -2.36
RPRD1AQ96P16 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.32□□□□□ -2.36
RPRD1AQ96P16 MIR3145-201ENST00000580727 82 ntBASIC0.32□□□□□ -2.36
RPRD1AQ96P16 VN1R91P-201ENST00000594377 169 ntBASIC0.32□□□□□ -2.36
RPRD1AQ96P16 AC090625.1-201ENST00000357130 210 ntBASIC0.31□□□□□ -2.36
RPRD1AQ96P16 RNU6-490P-201ENST00000362985 107 ntBASIC0.31□□□□□ -2.36
RPRD1AQ96P16 RNU6-934P-201ENST00000365154 107 ntBASIC0.31□□□□□ -2.36
RPRD1AQ96P16 MT-TL1-201ENST00000386347 75 ntBASIC0.31□□□□□ -2.36
RPRD1AQ96P16 RNU6-876P-201ENST00000391295 104 ntBASIC0.31□□□□□ -2.36
RPRD1AQ96P16 RNU6-977P-201ENST00000516411 103 ntBASIC0.31□□□□□ -2.36
RPRD1AQ96P16 RPL23AP91-201ENST00000569211 455 ntBASIC0.31□□□□□ -2.36
RPRD1AQ96P16 MIR4771-2-201ENST00000577758 74 ntBASIC0.31□□□□□ -2.36
RPRD1AQ96P16 MIR3612-201ENST00000579753 87 ntBASIC0.31□□□□□ -2.36
RPRD1AQ96P16 MIR4771-1-201ENST00000582617 74 ntBASIC0.31□□□□□ -2.36
RPRD1AQ96P16 AP000753.3-201ENST00000604083 169 ntBASIC0.31□□□□□ -2.36
RPRD1AQ96P16 AC006441.5-201ENST00000612680 209 ntBASIC0.31□□□□□ -2.36
RPRD1AQ96P16 AC010205.1-201ENST00000616668 449 ntBASIC0.31□□□□□ -2.36
RPRD1AQ96P16 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.31□□□□□ -2.36
RPRD1AQ96P16 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.3□□□□□ -2.36
RPRD1AQ96P16 SNORA1.2-201ENST00000365189 134 ntBASIC0.3□□□□□ -2.36
RPRD1AQ96P16 AC024067.1-201ENST00000426199 223 ntBASIC0.3□□□□□ -2.36
RPRD1AQ96P16 AC002350.1-201ENST00000490759 375 ntBASIC0.3□□□□□ -2.36
RPRD1AQ96P16 RNA5SP134-201ENST00000516492 96 ntBASIC0.3□□□□□ -2.36
RPRD1AQ96P16 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.3□□□□□ -2.36
RPRD1AQ96P16 AC113139.1-201ENST00000605049 239 ntBASIC0.3□□□□□ -2.36
RPRD1AQ96P16 MIR4272-201ENST00000635924 64 ntBASIC0.3□□□□□ -2.36
RPRD1AQ96P16 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.29□□□□□ -2.36
RPRD1AQ96P16 RNU6-1048P-201ENST00000364054 107 ntBASIC0.29□□□□□ -2.36
RPRD1AQ96P16 Y_RNA.462-201ENST00000384268 102 ntBASIC0.29□□□□□ -2.36
RPRD1AQ96P16 MIR7-2-201ENST00000384970 110 ntBASIC0.29□□□□□ -2.36
RPRD1AQ96P16 RNU6-847P-201ENST00000411115 108 ntBASIC0.29□□□□□ -2.36
RPRD1AQ96P16 AC090844.1-201ENST00000422019 156 ntBASIC0.29□□□□□ -2.36
RPRD1AQ96P16 SNORD11-201ENST00000459124 84 ntBASIC0.29□□□□□ -2.36
RPRD1AQ96P16 RNU6-437P-201ENST00000459408 95 ntBASIC0.29□□□□□ -2.36
RPRD1AQ96P16 MIR2681-201ENST00000581814 105 ntBASIC0.29□□□□□ -2.36
RPRD1AQ96P16 MIR4264-201ENST00000583520 66 ntBASIC0.29□□□□□ -2.36
RPRD1AQ96P16 AL080274.1-201ENST00000605565 220 ntBASIC0.29□□□□□ -2.36
RPRD1AQ96P16 LARP7P1-201ENST00000605576 316 ntBASIC0.29□□□□□ -2.36
RPRD1AQ96P16 AL162730.1-201ENST00000605734 292 ntBASIC0.29□□□□□ -2.36
RPRD1AQ96P16 AC133104.2-201ENST00000615272 193 ntBASIC0.29□□□□□ -2.36
RPRD1AQ96P16 MIR6779-201ENST00000617283 64 ntBASIC0.29□□□□□ -2.36
RPRD1AQ96P16 RNU6-674P-201ENST00000363831 107 ntBASIC0.28□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 185.7 ms