Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 RPL23AP91-201ENST00000569211 455 ntBASIC0.61□□□□□ -2.31
CCDC54Q8NEL0 RPS29P30-201ENST00000600975 111 ntBASIC0.61□□□□□ -2.31
CCDC54Q8NEL0 AL353765.1-201ENST00000605514 183 ntBASIC0.61□□□□□ -2.31
CCDC54Q8NEL0 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.6□□□□□ -2.31
CCDC54Q8NEL0 Y_RNA.26-201ENST00000362539 101 ntBASIC0.6□□□□□ -2.31
CCDC54Q8NEL0 SNORD113-8-201ENST00000363497 74 ntBASIC0.6□□□□□ -2.31
CCDC54Q8NEL0 Y_RNA.494-201ENST00000384432 111 ntBASIC0.6□□□□□ -2.31
CCDC54Q8NEL0 RNU6-763P-201ENST00000390865 106 ntBASIC0.6□□□□□ -2.31
CCDC54Q8NEL0 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.6□□□□□ -2.31
CCDC54Q8NEL0 RPS26P5-201ENST00000418544 335 ntBASIC0.6□□□□□ -2.31
CCDC54Q8NEL0 snoU13.21-201ENST00000459368 105 ntBASIC0.6□□□□□ -2.31
CCDC54Q8NEL0 RNU6-437P-201ENST00000459408 95 ntBASIC0.6□□□□□ -2.31
CCDC54Q8NEL0 Y_RNA.637-201ENST00000459424 114 ntBASIC0.6□□□□□ -2.31
CCDC54Q8NEL0 RNU2-13P-201ENST00000515909 113 ntBASIC0.6□□□□□ -2.31
CCDC54Q8NEL0 RNU6-475P-201ENST00000516073 104 ntBASIC0.6□□□□□ -2.31
CCDC54Q8NEL0 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.6□□□□□ -2.31
CCDC54Q8NEL0 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC0.6□□□□□ -2.31
CCDC54Q8NEL0 MIR3973-201ENST00000579824 107 ntBASIC0.6□□□□□ -2.31
CCDC54Q8NEL0 MIR548AO-201ENST00000579992 96 ntBASIC0.6□□□□□ -2.31
CCDC54Q8NEL0 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.6□□□□□ -2.31
CCDC54Q8NEL0 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.6□□□□□ -2.31
CCDC54Q8NEL0 AL590095.2-201ENST00000604136 117 ntBASIC0.6□□□□□ -2.31
CCDC54Q8NEL0 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.6□□□□□ -2.31
CCDC54Q8NEL0 MIR4251-201ENST00000635819 61 ntBASIC0.6□□□□□ -2.31
CCDC54Q8NEL0 SNORD14E-201ENST00000364009 85 ntBASIC0.59□□□□□ -2.31
CCDC54Q8NEL0 Y_RNA.338-201ENST00000365320 114 ntBASIC0.59□□□□□ -2.31
CCDC54Q8NEL0 SNORD115-46-201ENST00000390982 71 ntBASIC0.59□□□□□ -2.31
CCDC54Q8NEL0 RNU6-823P-201ENST00000391042 103 ntBASIC0.59□□□□□ -2.31
CCDC54Q8NEL0 U8.17-201ENST00000391292 132 ntBASIC0.59□□□□□ -2.31
CCDC54Q8NEL0 MTCO2P33-201ENST00000402100 465 ntBASIC0.59□□□□□ -2.31
CCDC54Q8NEL0 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.59□□□□□ -2.31
CCDC54Q8NEL0 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.59□□□□□ -2.31
CCDC54Q8NEL0 AC098869.1-201ENST00000481627 292 ntBASIC0.59□□□□□ -2.31
CCDC54Q8NEL0 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.59□□□□□ -2.31
CCDC54Q8NEL0 MRPS35P2-201ENST00000508242 191 ntBASIC0.59□□□□□ -2.31
CCDC54Q8NEL0 RNU6-1053P-201ENST00000515930 101 ntBASIC0.59□□□□□ -2.31
CCDC54Q8NEL0 RNU6-897P-201ENST00000517135 105 ntBASIC0.59□□□□□ -2.31
CCDC54Q8NEL0 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC0.59□□□□□ -2.31
CCDC54Q8NEL0 AL021707.8-201ENST00000609428 183 ntBASIC0.59□□□□□ -2.31
CCDC54Q8NEL0 AC006441.5-201ENST00000612680 209 ntBASIC0.59□□□□□ -2.31
CCDC54Q8NEL0 Pinc.1-201ENST00000616452 154 ntBASIC0.59□□□□□ -2.31
CCDC54Q8NEL0 Y_RNA.136-201ENST00000363444 102 ntBASIC0.58□□□□□ -2.32
CCDC54Q8NEL0 SNORD45.3-201ENST00000363836 72 ntBASIC0.58□□□□□ -2.32
CCDC54Q8NEL0 RNA5SP48-201ENST00000363969 126 ntBASIC0.58□□□□□ -2.32
CCDC54Q8NEL0 RNU6-806P-201ENST00000365147 105 ntBASIC0.58□□□□□ -2.32
CCDC54Q8NEL0 RNU6-21P-201ENST00000384710 107 ntBASIC0.58□□□□□ -2.32
CCDC54Q8NEL0 MIR215-201ENST00000384858 110 ntBASIC0.58□□□□□ -2.32
CCDC54Q8NEL0 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.58□□□□□ -2.32
CCDC54Q8NEL0 RNU6-383P-201ENST00000410864 94 ntBASIC0.58□□□□□ -2.32
CCDC54Q8NEL0 AC090844.1-201ENST00000422019 156 ntBASIC0.58□□□□□ -2.32
CCDC54Q8NEL0 MTCO1P5-201ENST00000433573 344 ntBASIC0.58□□□□□ -2.32
CCDC54Q8NEL0 POLR2KP2-201ENST00000438155 177 ntBASIC0.58□□□□□ -2.32
CCDC54Q8NEL0 AC004817.2-201ENST00000561794 651 ntBASIC0.58□□□□□ -2.32
CCDC54Q8NEL0 C8orf59P2-201ENST00000603441 271 ntBASIC0.58□□□□□ -2.32
CCDC54Q8NEL0 SNORD113-5-201ENST00000607261 78 ntBASIC0.58□□□□□ -2.32
CCDC54Q8NEL0 AL138825.1-201ENST00000618587 192 ntBASIC0.58□□□□□ -2.32
CCDC54Q8NEL0 MIR6835-201ENST00000621552 64 ntBASIC0.58□□□□□ -2.32
CCDC54Q8NEL0 MTND1P7-201ENST00000632801 297 ntBASIC0.58□□□□□ -2.32
CCDC54Q8NEL0 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.58□□□□□ -2.32
CCDC54Q8NEL0 MIR373-201ENST00000362273 69 ntBASIC0.57□□□□□ -2.32
CCDC54Q8NEL0 snoU2_19.2-201ENST00000363024 80 ntBASIC0.57□□□□□ -2.32
CCDC54Q8NEL0 RNU6-442P-201ENST00000383968 104 ntBASIC0.57□□□□□ -2.32
CCDC54Q8NEL0 MIR15B-201ENST00000385045 98 ntBASIC0.57□□□□□ -2.32
CCDC54Q8NEL0 SNORD89-201ENST00000390981 114 ntBASIC0.57□□□□□ -2.32
CCDC54Q8NEL0 Y_RNA.602-201ENST00000410535 92 ntBASIC0.57□□□□□ -2.32
CCDC54Q8NEL0 RNU6-733P-201ENST00000410759 104 ntBASIC0.57□□□□□ -2.32
CCDC54Q8NEL0 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.57□□□□□ -2.32
CCDC54Q8NEL0 AC113410.1-201ENST00000505029 247 ntBASIC0.57□□□□□ -2.32
CCDC54Q8NEL0 SEPT14P8-201ENST00000508026 178 ntBASIC0.57□□□□□ -2.32
CCDC54Q8NEL0 AC007751.1-201ENST00000529260 376 ntBASIC0.57□□□□□ -2.32
CCDC54Q8NEL0 AC087685.1-201ENST00000587507 141 ntBASIC0.57□□□□□ -2.32
CCDC54Q8NEL0 AC012433.1-201ENST00000588916 398 ntBASIC0.57□□□□□ -2.32
CCDC54Q8NEL0 AC022140.2-201ENST00000623500 188 ntBASIC0.57□□□□□ -2.32
CCDC54Q8NEL0 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.57□□□□□ -2.32
CCDC54Q8NEL0 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
CCDC54Q8NEL0 Y_RNA.138-201ENST00000363462 102 ntBASIC0.56□□□□□ -2.32
CCDC54Q8NEL0 RNU6-125P-201ENST00000384505 107 ntBASIC0.56□□□□□ -2.32
CCDC54Q8NEL0 SNORD99-201ENST00000408612 74 ntBASIC0.56□□□□□ -2.32
CCDC54Q8NEL0 RNU6-613P-201ENST00000410412 108 ntBASIC0.56□□□□□ -2.32
CCDC54Q8NEL0 RNU6-321P-201ENST00000410912 106 ntBASIC0.56□□□□□ -2.32
CCDC54Q8NEL0 ELOCP20-201ENST00000422460 345 ntBASIC0.56□□□□□ -2.32
CCDC54Q8NEL0 RNU11-2P-201ENST00000516898 142 ntBASIC0.56□□□□□ -2.32
CCDC54Q8NEL0 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.56□□□□□ -2.32
CCDC54Q8NEL0 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.56□□□□□ -2.32
CCDC54Q8NEL0 MIR4791-201ENST00000607666 84 ntBASIC0.56□□□□□ -2.32
CCDC54Q8NEL0 uc_338.6-201ENST00000613544 171 ntBASIC0.56□□□□□ -2.32
CCDC54Q8NEL0 JPX_2.1-201ENST00000614161 69 ntBASIC0.56□□□□□ -2.32
CCDC54Q8NEL0 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.56□□□□□ -2.32
CCDC54Q8NEL0 RNY1P8-201ENST00000383970 114 ntBASIC0.55□□□□□ -2.32
CCDC54Q8NEL0 Y_RNA.541-201ENST00000384640 113 ntBASIC0.55□□□□□ -2.32
CCDC54Q8NEL0 RPL21P38-201ENST00000418090 167 ntBASIC0.55□□□□□ -2.32
CCDC54Q8NEL0 AC244098.3-201ENST00000424803 96 ntBASIC0.55□□□□□ -2.32
CCDC54Q8NEL0 AL603825.1-201ENST00000438481 80 ntBASIC0.55□□□□□ -2.32
CCDC54Q8NEL0 COX6CP6-201ENST00000490840 228 ntBASIC0.55□□□□□ -2.32
CCDC54Q8NEL0 AL117351.2-201ENST00000513571 157 ntBASIC0.55□□□□□ -2.32
CCDC54Q8NEL0 RNU7-25P-201ENST00000516544 62 ntBASIC0.55□□□□□ -2.32
CCDC54Q8NEL0 AC124312.5-201ENST00000604451 268 ntBASIC0.55□□□□□ -2.32
CCDC54Q8NEL0 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.55□□□□□ -2.32
CCDC54Q8NEL0 MIR376A1-201ENST00000616574 68 ntBASIC0.55□□□□□ -2.32
CCDC54Q8NEL0 AC015726.2-201ENST00000620112 122 ntBASIC0.55□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 134.6 ms