Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RNU6-589P-201ENST00000516485 107 ntBASIC2.77□□□□□ -1.97
USHBP1Q8N6Y0 MIR4446-201ENST00000578505 67 ntBASIC2.77□□□□□ -1.97
USHBP1Q8N6Y0 MIR3129-201ENST00000581095 76 ntBASIC2.77□□□□□ -1.97
USHBP1Q8N6Y0 AL670379.3-201ENST00000605040 251 ntBASIC2.77□□□□□ -1.97
USHBP1Q8N6Y0 AL022345.2-201ENST00000606307 135 ntBASIC2.77□□□□□ -1.97
USHBP1Q8N6Y0 MIR126-201ENST00000362291 85 ntBASIC2.76□□□□□ -1.97
USHBP1Q8N6Y0 SNORD24-201ENST00000383884 75 ntBASIC2.76□□□□□ -1.97
USHBP1Q8N6Y0 SNORD61-201ENST00000384252 73 ntBASIC2.76□□□□□ -1.97
USHBP1Q8N6Y0 MIR515-2-201ENST00000384883 83 ntBASIC2.76□□□□□ -1.97
USHBP1Q8N6Y0 MIR515-1-201ENST00000384884 83 ntBASIC2.76□□□□□ -1.97
USHBP1Q8N6Y0 RNA5SP323-201ENST00000391094 133 ntBASIC2.76□□□□□ -1.97
USHBP1Q8N6Y0 AF228730.3-201ENST00000436691 102 ntBASIC2.76□□□□□ -1.97
USHBP1Q8N6Y0 ATP5J2P3-201ENST00000451550 258 ntBASIC2.76□□□□□ -1.97
USHBP1Q8N6Y0 AC008507.4-201ENST00000585464 127 ntBASIC2.76□□□□□ -1.97
USHBP1Q8N6Y0 AC087685.1-201ENST00000587507 141 ntBASIC2.76□□□□□ -1.97
USHBP1Q8N6Y0 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.76□□□□□ -1.97
USHBP1Q8N6Y0 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC2.76□□□□□ -1.97
USHBP1Q8N6Y0 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.75□□□□□ -1.97
USHBP1Q8N6Y0 RNU6-888P-201ENST00000363010 101 ntBASIC2.75□□□□□ -1.97
USHBP1Q8N6Y0 RNU6-755P-201ENST00000364400 103 ntBASIC2.75□□□□□ -1.97
USHBP1Q8N6Y0 RNU6-160P-201ENST00000384591 107 ntBASIC2.75□□□□□ -1.97
USHBP1Q8N6Y0 RNU6-1072P-201ENST00000384703 107 ntBASIC2.75□□□□□ -1.97
USHBP1Q8N6Y0 RNU6-443P-201ENST00000384780 107 ntBASIC2.75□□□□□ -1.97
USHBP1Q8N6Y0 SNORD72-201ENST00000390994 80 ntBASIC2.75□□□□□ -1.97
USHBP1Q8N6Y0 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.75□□□□□ -1.97
USHBP1Q8N6Y0 FTH1P12-201ENST00000432137 551 ntBASIC2.75□□□□□ -1.97
USHBP1Q8N6Y0 AL049830.1-201ENST00000468034 425 ntBASIC2.75□□□□□ -1.97
USHBP1Q8N6Y0 RPL23AP42-201ENST00000471152 471 ntBASIC2.75□□□□□ -1.97
USHBP1Q8N6Y0 RN7SKP19-201ENST00000516016 252 ntBASIC2.75□□□□□ -1.97
USHBP1Q8N6Y0 Y_RNA.346-201ENST00000365385 112 ntBASIC2.74□□□□□ -1.97
USHBP1Q8N6Y0 SNORA8-201ENST00000384574 139 ntBASIC2.74□□□□□ -1.97
USHBP1Q8N6Y0 MIR548A3-201ENST00000385297 97 ntBASIC2.74□□□□□ -1.97
USHBP1Q8N6Y0 AL117342.1-201ENST00000404861 406 ntBASIC2.74□□□□□ -1.97
USHBP1Q8N6Y0 AC009238.1-201ENST00000442165 424 ntBASIC2.74□□□□□ -1.97
USHBP1Q8N6Y0 AC009237.6-201ENST00000446969 424 ntBASIC2.74□□□□□ -1.97
USHBP1Q8N6Y0 CYCTP-201ENST00000504253 315 ntBASIC2.74□□□□□ -1.97
USHBP1Q8N6Y0 RNU6-693P-201ENST00000516134 107 ntBASIC2.74□□□□□ -1.97
USHBP1Q8N6Y0 Y_RNA.666-201ENST00000516187 112 ntBASIC2.74□□□□□ -1.97
USHBP1Q8N6Y0 AC024995.1-201ENST00000523014 93 ntBASIC2.74□□□□□ -1.97
USHBP1Q8N6Y0 AP002004.2-201ENST00000531656 154 ntBASIC2.74□□□□□ -1.97
USHBP1Q8N6Y0 MIR3670-2-201ENST00000582974 65 ntBASIC2.74□□□□□ -1.97
USHBP1Q8N6Y0 MIR3670-1-201ENST00000584160 65 ntBASIC2.74□□□□□ -1.97
USHBP1Q8N6Y0 MIR3670-3-201ENST00000584855 65 ntBASIC2.74□□□□□ -1.97
USHBP1Q8N6Y0 MIR3670-4-201ENST00000612260 65 ntBASIC2.74□□□□□ -1.97
USHBP1Q8N6Y0 AL591926.4-201ENST00000616895 298 ntBASIC2.74□□□□□ -1.97
USHBP1Q8N6Y0 AL449363.1-201ENST00000617815 186 ntBASIC2.74□□□□□ -1.97
USHBP1Q8N6Y0 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
USHBP1Q8N6Y0 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
USHBP1Q8N6Y0 AL021397.1-201ENST00000451806 248 ntBASIC2.73□□□□□ -1.97
USHBP1Q8N6Y0 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.73□□□□□ -1.97
USHBP1Q8N6Y0 SNORD33.1-201ENST00000516213 88 ntBASIC2.73□□□□□ -1.97
USHBP1Q8N6Y0 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
USHBP1Q8N6Y0 MTND5P32-201ENST00000560711 1802 ntBASIC2.72□□□□□ -1.97
USHBP1Q8N6Y0 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.72□□□□□ -1.97
USHBP1Q8N6Y0 Y_RNA.140-201ENST00000363474 103 ntBASIC2.72□□□□□ -1.97
USHBP1Q8N6Y0 SNORD116-21-201ENST00000384507 92 ntBASIC2.72□□□□□ -1.97
USHBP1Q8N6Y0 MIR522-201ENST00000385071 87 ntBASIC2.72□□□□□ -1.97
USHBP1Q8N6Y0 CST2P1-201ENST00000425770 87 ntBASIC2.72□□□□□ -1.97
USHBP1Q8N6Y0 RNU7-26P-201ENST00000458980 63 ntBASIC2.72□□□□□ -1.97
USHBP1Q8N6Y0 Y_RNA.651-201ENST00000459380 103 ntBASIC2.72□□□□□ -1.97
USHBP1Q8N6Y0 RNU6-781P-201ENST00000516377 101 ntBASIC2.72□□□□□ -1.97
USHBP1Q8N6Y0 RNU6-1270P-201ENST00000517128 108 ntBASIC2.72□□□□□ -1.97
USHBP1Q8N6Y0 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.72□□□□□ -1.97
USHBP1Q8N6Y0 U4atac.1-201ENST00000618345 95 ntBASIC2.72□□□□□ -1.97
USHBP1Q8N6Y0 AL121890.5-201ENST00000620848 304 ntBASIC2.72□□□□□ -1.97
USHBP1Q8N6Y0 AC092881.1-201ENST00000638218 2733 ntBASIC2.72□□□□□ -1.97
USHBP1Q8N6Y0 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
USHBP1Q8N6Y0 AC245060.5-201ENST00000610778 3293 ntBASIC2.71□□□□□ -1.98
USHBP1Q8N6Y0 SNORA1B-201ENST00000362535 133 ntBASIC2.71□□□□□ -1.98
USHBP1Q8N6Y0 RNU1-17P-201ENST00000363022 152 ntBASIC2.71□□□□□ -1.98
USHBP1Q8N6Y0 MIRLET7F2-201ENST00000385277 83 ntBASIC2.71□□□□□ -1.98
USHBP1Q8N6Y0 MIR1262-201ENST00000408276 93 ntBASIC2.71□□□□□ -1.98
USHBP1Q8N6Y0 AC063976.4-201ENST00000421971 163 ntBASIC2.71□□□□□ -1.98
USHBP1Q8N6Y0 AC003989.2-201ENST00000440224 169 ntBASIC2.71□□□□□ -1.98
USHBP1Q8N6Y0 SNRPGP13-201ENST00000442212 177 ntBASIC2.71□□□□□ -1.98
USHBP1Q8N6Y0 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC2.71□□□□□ -1.98
USHBP1Q8N6Y0 AL163195.1-201ENST00000496941 348 ntBASIC2.71□□□□□ -1.98
USHBP1Q8N6Y0 RPPH1-2P-201ENST00000516688 293 ntBASIC2.71□□□□□ -1.98
USHBP1Q8N6Y0 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.71□□□□□ -1.98
USHBP1Q8N6Y0 AC022217.4-201ENST00000604389 163 ntBASIC2.71□□□□□ -1.98
USHBP1Q8N6Y0 AL137847.3-201ENST00000611521 109 ntBASIC2.71□□□□□ -1.98
USHBP1Q8N6Y0 AC025166.1-201ENST00000612411 163 ntBASIC2.71□□□□□ -1.98
USHBP1Q8N6Y0 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC2.71□□□□□ -1.98
USHBP1Q8N6Y0 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.7□□□□□ -1.98
USHBP1Q8N6Y0 SNORA33-201ENST00000363664 130 ntBASIC2.7□□□□□ -1.98
USHBP1Q8N6Y0 SNORD77.3-201ENST00000391113 65 ntBASIC2.7□□□□□ -1.98
USHBP1Q8N6Y0 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.7□□□□□ -1.98
USHBP1Q8N6Y0 RNA5SP236-201ENST00000516169 116 ntBASIC2.7□□□□□ -1.98
USHBP1Q8N6Y0 RNA5SP458-201ENST00000516188 119 ntBASIC2.7□□□□□ -1.98
USHBP1Q8N6Y0 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.7□□□□□ -1.98
USHBP1Q8N6Y0 UGP2-230ENST00000626380 276 ntTSL 5 BASIC2.7□□□□□ -1.98
USHBP1Q8N6Y0 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.7□□□□□ -1.98
USHBP1Q8N6Y0 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.69□□□□□ -1.98
USHBP1Q8N6Y0 MIR6073-201ENST00000352083 89 ntBASIC2.69□□□□□ -1.98
USHBP1Q8N6Y0 RNU6-862P-201ENST00000362804 105 ntBASIC2.69□□□□□ -1.98
USHBP1Q8N6Y0 MIR802-201ENST00000390235 94 ntBASIC2.69□□□□□ -1.98
USHBP1Q8N6Y0 SNORA48.3-201ENST00000391081 134 ntBASIC2.69□□□□□ -1.98
USHBP1Q8N6Y0 SNORA40.18-201ENST00000391200 128 ntBASIC2.69□□□□□ -1.98
USHBP1Q8N6Y0 RNA5SP181-201ENST00000410246 98 ntBASIC2.69□□□□□ -1.98
USHBP1Q8N6Y0 Y_RNA.649-201ENST00000459077 103 ntBASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms