Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RNU4-75P-201ENST00000364621 146 ntBASIC-2.31□□□□□ -2.78
LINC00643Q86TS7 RNU6-154P-201ENST00000384306 106 ntBASIC-2.31□□□□□ -2.78
LINC00643Q86TS7 RNU6-541P-201ENST00000384709 110 ntBASIC-2.31□□□□□ -2.78
LINC00643Q86TS7 Y_RNA.583-201ENST00000391033 113 ntBASIC-2.31□□□□□ -2.78
LINC00643Q86TS7 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC-2.31□□□□□ -2.78
LINC00643Q86TS7 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC-2.31□□□□□ -2.78
LINC00643Q86TS7 HLA-S-202ENST00000425174 53 ntBASIC-2.31□□□□□ -2.78
LINC00643Q86TS7 UBE2D3P4-201ENST00000441973 436 ntBASIC-2.31□□□□□ -2.78
LINC00643Q86TS7 snoU13.11-201ENST00000459219 104 ntBASIC-2.31□□□□□ -2.78
LINC00643Q86TS7 RNU6-1028P-201ENST00000517164 93 ntBASIC-2.31□□□□□ -2.78
LINC00643Q86TS7 SNORA40.17-201ENST00000517256 115 ntBASIC-2.31□□□□□ -2.78
LINC00643Q86TS7 AC009248.2-201ENST00000619826 254 ntBASIC-2.31□□□□□ -2.78
LINC00643Q86TS7 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC-2.31□□□□□ -2.78
LINC00643Q86TS7 RNU6-1062P-201ENST00000383908 107 ntBASIC-2.32□□□□□ -2.78
LINC00643Q86TS7 RNU6-1127P-201ENST00000384580 107 ntBASIC-2.32□□□□□ -2.78
LINC00643Q86TS7 RNU6-325P-201ENST00000411132 105 ntBASIC-2.32□□□□□ -2.78
LINC00643Q86TS7 Y_RNA.683-201ENST00000516508 93 ntBASIC-2.32□□□□□ -2.78
LINC00643Q86TS7 MTND4LP18-201ENST00000526864 291 ntBASIC-2.32□□□□□ -2.78
LINC00643Q86TS7 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC-2.32□□□□□ -2.78
LINC00643Q86TS7 PIGPP4-201ENST00000584447 307 ntBASIC-2.32□□□□□ -2.78
LINC00643Q86TS7 RNU6-973P-201ENST00000364690 107 ntBASIC-2.33□□□□□ -2.78
LINC00643Q86TS7 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC-2.33□□□□□ -2.78
LINC00643Q86TS7 Y_RNA.598-201ENST00000410480 95 ntBASIC-2.33□□□□□ -2.78
LINC00643Q86TS7 RNU4-55P-201ENST00000410731 137 ntBASIC-2.33□□□□□ -2.78
LINC00643Q86TS7 MTND3P8-201ENST00000412909 339 ntBASIC-2.33□□□□□ -2.78
LINC00643Q86TS7 MTND1P11-201ENST00000456661 876 ntBASIC-2.33□□□□□ -2.78
LINC00643Q86TS7 RNU7-138P-201ENST00000459479 64 ntBASIC-2.33□□□□□ -2.78
LINC00643Q86TS7 AC105417.1-201ENST00000514691 285 ntBASIC-2.33□□□□□ -2.78
LINC00643Q86TS7 MIR5704-201ENST00000584029 77 ntBASIC-2.33□□□□□ -2.78
LINC00643Q86TS7 TUSC7.1-201ENST00000610969 165 ntBASIC-2.33□□□□□ -2.78
LINC00643Q86TS7 AC069503.3-201ENST00000618674 145 ntBASIC-2.33□□□□□ -2.78
LINC00643Q86TS7 RNU6-809P-201ENST00000384461 107 ntBASIC-2.34□□□□□ -2.78
LINC00643Q86TS7 RNU7-74P-201ENST00000459104 62 ntBASIC-2.34□□□□□ -2.78
LINC00643Q86TS7 SERF1AP1-201ENST00000514575 187 ntBASIC-2.34□□□□□ -2.78
LINC00643Q86TS7 Y_RNA.681-201ENST00000516445 113 ntBASIC-2.34□□□□□ -2.78
LINC00643Q86TS7 SCARNA24.1-201ENST00000516465 137 ntBASIC-2.34□□□□□ -2.78
LINC00643Q86TS7 AP003733.2-201ENST00000529409 171 ntBASIC-2.34□□□□□ -2.78
LINC00643Q86TS7 YWHAEP2-201ENST00000580066 112 ntBASIC-2.34□□□□□ -2.78
LINC00643Q86TS7 MIR548AE1-201ENST00000583292 70 ntBASIC-2.34□□□□□ -2.78
LINC00643Q86TS7 Y_RNA.365-201ENST00000365537 102 ntBASIC-2.35□□□□□ -2.79
LINC00643Q86TS7 Y_RNA.452-201ENST00000384202 108 ntBASIC-2.35□□□□□ -2.79
LINC00643Q86TS7 SNORA72-201ENST00000384339 132 ntBASIC-2.35□□□□□ -2.79
LINC00643Q86TS7 MIR626-201ENST00000385032 94 ntBASIC-2.35□□□□□ -2.79
LINC00643Q86TS7 RNU2-9P-201ENST00000410194 145 ntBASIC-2.35□□□□□ -2.79
LINC00643Q86TS7 RNU6-1190P-201ENST00000410811 104 ntBASIC-2.35□□□□□ -2.79
LINC00643Q86TS7 RNU6-531P-201ENST00000516694 104 ntBASIC-2.35□□□□□ -2.79
LINC00643Q86TS7 SCOCP1-201ENST00000554676 349 ntBASIC-2.35□□□□□ -2.79
LINC00643Q86TS7 AC141846.1-201ENST00000568348 142 ntBASIC-2.35□□□□□ -2.79
LINC00643Q86TS7 AC011603.4-201ENST00000611325 277 ntBASIC-2.35□□□□□ -2.79
LINC00643Q86TS7 AC006386.1-201ENST00000619436 415 ntBASIC-2.35□□□□□ -2.79
LINC00643Q86TS7 AC091931.1-201ENST00000623488 728 ntBASIC-2.35□□□□□ -2.79
LINC00643Q86TS7 AC007671.2-201ENST00000637344 619 ntBASIC-2.35□□□□□ -2.79
LINC00643Q86TS7 Y_RNA.56-201ENST00000362798 112 ntBASIC-2.36□□□□□ -2.79
LINC00643Q86TS7 Y_RNA.150-201ENST00000363562 102 ntBASIC-2.36□□□□□ -2.79
LINC00643Q86TS7 MRPL42P2-201ENST00000403169 426 ntBASIC-2.36□□□□□ -2.79
LINC00643Q86TS7 USP9YP21-201ENST00000420603 432 ntBASIC-2.36□□□□□ -2.79
LINC00643Q86TS7 Z82188.1-201ENST00000436709 154 ntBASIC-2.36□□□□□ -2.79
LINC00643Q86TS7 AL031667.1-201ENST00000440222 725 ntBASIC-2.36□□□□□ -2.79
LINC00643Q86TS7 AP003181.2-201ENST00000528941 181 ntBASIC-2.36□□□□□ -2.79
LINC00643Q86TS7 MIR20A-201ENST00000362279 71 ntBASIC-2.37□□□□□ -2.79
LINC00643Q86TS7 RNU4-58P-201ENST00000363192 141 ntBASIC-2.37□□□□□ -2.79
LINC00643Q86TS7 Y_RNA.399-201ENST00000383955 105 ntBASIC-2.37□□□□□ -2.79
LINC00643Q86TS7 Y_RNA.466-201ENST00000384294 113 ntBASIC-2.37□□□□□ -2.79
LINC00643Q86TS7 USMG5P1-201ENST00000425964 177 ntBASIC-2.37□□□□□ -2.79
LINC00643Q86TS7 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC-2.37□□□□□ -2.79
LINC00643Q86TS7 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC-2.37□□□□□ -2.79
LINC00643Q86TS7 MTND1P27-201ENST00000451117 902 ntBASIC-2.37□□□□□ -2.79
LINC00643Q86TS7 AC008507.4-201ENST00000585464 127 ntBASIC-2.37□□□□□ -2.79
LINC00643Q86TS7 MIR6854-201ENST00000614935 69 ntBASIC-2.37□□□□□ -2.79
LINC00643Q86TS7 AC027807.2-201ENST00000616099 408 ntBASIC-2.37□□□□□ -2.79
LINC00643Q86TS7 SNORD115-25-201ENST00000362619 82 ntBASIC-2.38□□□□□ -2.79
LINC00643Q86TS7 Y_RNA.221-201ENST00000364248 96 ntBASIC-2.38□□□□□ -2.79
LINC00643Q86TS7 RNY1P12-201ENST00000364251 105 ntBASIC-2.38□□□□□ -2.79
LINC00643Q86TS7 SNORD115-35-201ENST00000365122 82 ntBASIC-2.38□□□□□ -2.79
LINC00643Q86TS7 Y_RNA.498-201ENST00000384460 102 ntBASIC-2.38□□□□□ -2.79
LINC00643Q86TS7 MIR521-1-201ENST00000384902 87 ntBASIC-2.38□□□□□ -2.79
LINC00643Q86TS7 SNORD115.1-201ENST00000391109 76 ntBASIC-2.38□□□□□ -2.79
LINC00643Q86TS7 RNU7-167P-201ENST00000459160 62 ntBASIC-2.38□□□□□ -2.79
LINC00643Q86TS7 RNU6-1220P-201ENST00000517126 108 ntBASIC-2.38□□□□□ -2.79
LINC00643Q86TS7 AC064836.2-201ENST00000609491 462 ntBASIC-2.38□□□□□ -2.79
LINC00643Q86TS7 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC-2.38□□□□□ -2.79
LINC00643Q86TS7 Y_RNA.6-201ENST00000362350 114 ntBASIC-2.39□□□□□ -2.79
LINC00643Q86TS7 Y_RNA.220-201ENST00000364244 109 ntBASIC-2.39□□□□□ -2.79
LINC00643Q86TS7 Y_RNA.367-201ENST00000365544 101 ntBASIC-2.39□□□□□ -2.79
LINC00643Q86TS7 RNU6-949P-201ENST00000384040 107 ntBASIC-2.39□□□□□ -2.79
LINC00643Q86TS7 RNU5E-9P-201ENST00000411164 104 ntBASIC-2.39□□□□□ -2.79
LINC00643Q86TS7 RPS29P24-201ENST00000486345 171 ntBASIC-2.39□□□□□ -2.79
LINC00643Q86TS7 MTCO1P29-201ENST00000496868 288 ntBASIC-2.39□□□□□ -2.79
LINC00643Q86TS7 AC112204.1-201ENST00000502591 103 ntBASIC-2.39□□□□□ -2.79
LINC00643Q86TS7 AC116353.3-201ENST00000511215 249 ntBASIC-2.39□□□□□ -2.79
LINC00643Q86TS7 MIR4775-201ENST00000581168 75 ntBASIC-2.39□□□□□ -2.79
LINC00643Q86TS7 AC245014.2-201ENST00000603689 287 ntBASIC-2.39□□□□□ -2.79
LINC00643Q86TS7 JPX_2.1-201ENST00000614161 69 ntBASIC-2.39□□□□□ -2.79
LINC00643Q86TS7 Y_RNA.243-201ENST00000364481 109 ntBASIC-2.4□□□□□ -2.79
LINC00643Q86TS7 RNY4P3-201ENST00000365254 95 ntBASIC-2.4□□□□□ -2.79
LINC00643Q86TS7 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC-2.4□□□□□ -2.79
LINC00643Q86TS7 RNU6-479P-201ENST00000516348 105 ntBASIC-2.4□□□□□ -2.79
LINC00643Q86TS7 CLPTM1LP1-201ENST00000604519 484 ntBASIC-2.4□□□□□ -2.79
LINC00643Q86TS7 AC022441.3-201ENST00000605737 136 ntBASIC-2.4□□□□□ -2.79
LINC00643Q86TS7 Y_RNA.361-201ENST00000365515 120 ntBASIC-2.41□□□□□ -2.8
Retrieved 100 of 98,524 protein–RNA pairs in 211 ms