Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SNORD116-3-201ENST00000384287 95 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 SNORD116-8-201ENST00000384365 95 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 SNORD116-7-201ENST00000384404 95 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 SNORD116-5-201ENST00000384462 95 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 Y_RNA.524-201ENST00000384564 100 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 Y_RNA.561-201ENST00000384694 100 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 MIR760-201ENST00000390220 80 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 FCF1P4-201ENST00000448326 183 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 RNU7-62P-201ENST00000458856 62 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 AC008608.1-201ENST00000603910 127 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 Z94722.1-201ENST00000604328 474 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 AC022441.3-201ENST00000605737 136 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 SNORD114-5-201ENST00000362928 70 ntBASIC-0.32□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-1085P-201ENST00000363576 107 ntBASIC-0.32□□□□□ -2.46
CCDC88AQ3V6T2 SNORD14C-201ENST00000365382 88 ntBASIC-0.32□□□□□ -2.46
CCDC88AQ3V6T2 RNU4-20P-201ENST00000365601 151 ntBASIC-0.32□□□□□ -2.46
CCDC88AQ3V6T2 RNY3P4-201ENST00000384428 101 ntBASIC-0.32□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-601P-201ENST00000384540 107 ntBASIC-0.32□□□□□ -2.46
CCDC88AQ3V6T2 AL031003.1-201ENST00000404229 172 ntBASIC-0.32□□□□□ -2.46
CCDC88AQ3V6T2 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC-0.32□□□□□ -2.46
CCDC88AQ3V6T2 SNRPGP10-201ENST00000432323 225 ntBASIC-0.32□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-329P-201ENST00000459618 107 ntBASIC-0.32□□□□□ -2.46
CCDC88AQ3V6T2 AC019235.1-201ENST00000503847 207 ntBASIC-0.32□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-469P-201ENST00000516253 101 ntBASIC-0.32□□□□□ -2.46
CCDC88AQ3V6T2 AC060788.1-201ENST00000521318 469 ntBASIC-0.33□□□□□ -2.46
CCDC88AQ3V6T2 AC119751.7-201ENST00000600494 245 ntBASIC-0.33□□□□□ -2.46
CCDC88AQ3V6T2 Y_RNA.77-201ENST00000362962 107 ntBASIC-0.33□□□□□ -2.46
CCDC88AQ3V6T2 Y_RNA.212-201ENST00000364177 102 ntBASIC-0.33□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-929P-201ENST00000384429 107 ntBASIC-0.33□□□□□ -2.46
CCDC88AQ3V6T2 Y_RNA.498-201ENST00000384460 102 ntBASIC-0.33□□□□□ -2.46
CCDC88AQ3V6T2 Y_RNA.557-201ENST00000384680 107 ntBASIC-0.33□□□□□ -2.46
CCDC88AQ3V6T2 MIR224-201ENST00000384889 81 ntBASIC-0.33□□□□□ -2.46
CCDC88AQ3V6T2 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC-0.33□□□□□ -2.46
CCDC88AQ3V6T2 RNA5SP266-201ENST00000410273 108 ntBASIC-0.33□□□□□ -2.46
CCDC88AQ3V6T2 SNORD12B-201ENST00000410433 91 ntBASIC-0.33□□□□□ -2.46
CCDC88AQ3V6T2 AC074198.2-201ENST00000508153 258 ntBASIC-0.33□□□□□ -2.46
CCDC88AQ3V6T2 RN7SKP298-201ENST00000515950 94 ntBASIC-0.33□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-320P-201ENST00000516511 106 ntBASIC-0.33□□□□□ -2.46
CCDC88AQ3V6T2 MTATP6P24-201ENST00000576835 677 ntBASIC-0.33□□□□□ -2.46
CCDC88AQ3V6T2 MIR5706-201ENST00000579841 80 ntBASIC-0.33□□□□□ -2.46
CCDC88AQ3V6T2 AC018638.8-201ENST00000588755 281 ntBASIC-0.33□□□□□ -2.46
CCDC88AQ3V6T2 AC060780.3-201ENST00000589464 80 ntBASIC-0.33□□□□□ -2.46
CCDC88AQ3V6T2 MIR8064-201ENST00000612863 90 ntBASIC-0.33□□□□□ -2.46
CCDC88AQ3V6T2 AL050303.3-201ENST00000613704 284 ntBASIC-0.33□□□□□ -2.46
CCDC88AQ3V6T2 AC004467.1-201ENST00000615678 330 ntBASIC-0.33□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-268P-201ENST00000364174 107 ntBASIC-0.34□□□□□ -2.46
CCDC88AQ3V6T2 Y_RNA.310-201ENST00000365063 113 ntBASIC-0.34□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-756P-201ENST00000383997 107 ntBASIC-0.34□□□□□ -2.46
CCDC88AQ3V6T2 MIR563-201ENST00000385080 79 ntBASIC-0.34□□□□□ -2.46
CCDC88AQ3V6T2 MIR802-201ENST00000390235 94 ntBASIC-0.34□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-192P-201ENST00000391253 100 ntBASIC-0.34□□□□□ -2.46
CCDC88AQ3V6T2 MTND4LP11-201ENST00000422184 280 ntBASIC-0.34□□□□□ -2.46
CCDC88AQ3V6T2 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC-0.34□□□□□ -2.46
CCDC88AQ3V6T2 POLR2KP2-201ENST00000438155 177 ntBASIC-0.34□□□□□ -2.46
CCDC88AQ3V6T2 SNORD4A-201ENST00000459174 72 ntBASIC-0.34□□□□□ -2.46
CCDC88AQ3V6T2 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.34□□□□□ -2.46
CCDC88AQ3V6T2 MIR2681-201ENST00000581814 105 ntBASIC-0.34□□□□□ -2.46
CCDC88AQ3V6T2 AP000942.4-201ENST00000604811 241 ntBASIC-0.34□□□□□ -2.46
CCDC88AQ3V6T2 AC090517.2-201ENST00000614966 680 ntBASIC-0.34□□□□□ -2.46
CCDC88AQ3V6T2 Y_RNA.373-201ENST00000365600 103 ntBASIC-0.35□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-95P-201ENST00000384697 107 ntBASIC-0.35□□□□□ -2.46
CCDC88AQ3V6T2 MIR644A-201ENST00000385262 94 ntBASIC-0.35□□□□□ -2.46
CCDC88AQ3V6T2 Y_RNA.587-201ENST00000391210 103 ntBASIC-0.35□□□□□ -2.46
CCDC88AQ3V6T2 ATP6V0E1P1-201ENST00000412537 226 ntBASIC-0.35□□□□□ -2.46
CCDC88AQ3V6T2 MTCO1P5-201ENST00000433573 344 ntBASIC-0.35□□□□□ -2.46
CCDC88AQ3V6T2 NBR2-204ENST00000587322 63 ntBASIC-0.35□□□□□ -2.46
CCDC88AQ3V6T2 AC022140.2-201ENST00000623500 188 ntBASIC-0.35□□□□□ -2.46
CCDC88AQ3V6T2 Y_RNA.172-201ENST00000363765 102 ntBASIC-0.35□□□□□ -2.47
CCDC88AQ3V6T2 RNU6-593P-201ENST00000364716 112 ntBASIC-0.35□□□□□ -2.47
CCDC88AQ3V6T2 RNA5SP118-201ENST00000410385 109 ntBASIC-0.35□□□□□ -2.47
CCDC88AQ3V6T2 RNU6-1199P-201ENST00000411249 104 ntBASIC-0.35□□□□□ -2.47
CCDC88AQ3V6T2 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC-0.35□□□□□ -2.47
CCDC88AQ3V6T2 RNU7-115P-201ENST00000516433 55 ntBASIC-0.35□□□□□ -2.47
CCDC88AQ3V6T2 MIR548AD-201ENST00000584780 82 ntBASIC-0.35□□□□□ -2.47
CCDC88AQ3V6T2 RNU6-259P-201ENST00000383999 107 ntBASIC-0.36□□□□□ -2.47
CCDC88AQ3V6T2 Y_RNA.414-201ENST00000384011 101 ntBASIC-0.36□□□□□ -2.47
CCDC88AQ3V6T2 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC-0.36□□□□□ -2.47
CCDC88AQ3V6T2 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC-0.36□□□□□ -2.47
CCDC88AQ3V6T2 RNA5SP67-201ENST00000516422 131 ntBASIC-0.36□□□□□ -2.47
CCDC88AQ3V6T2 SNORA31.14-201ENST00000516728 116 ntBASIC-0.36□□□□□ -2.47
CCDC88AQ3V6T2 AC133485.4-201ENST00000561835 220 ntBASIC-0.36□□□□□ -2.47
CCDC88AQ3V6T2 MIR4676-201ENST00000583078 72 ntBASIC-0.36□□□□□ -2.47
CCDC88AQ3V6T2 AC124312.5-201ENST00000604451 268 ntBASIC-0.36□□□□□ -2.47
CCDC88AQ3V6T2 AC020891.4-201ENST00000605745 93 ntBASIC-0.36□□□□□ -2.47
CCDC88AQ3V6T2 AC092794.2-201ENST00000620933 563 ntBASIC-0.36□□□□□ -2.47
CCDC88AQ3V6T2 MIR6828-201ENST00000636181 60 ntBASIC-0.36□□□□□ -2.47
CCDC88AQ3V6T2 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC-0.37□□□□□ -2.47
CCDC88AQ3V6T2 RNU6-1264P-201ENST00000383891 107 ntBASIC-0.37□□□□□ -2.47
CCDC88AQ3V6T2 RNU6-1323P-201ENST00000384025 107 ntBASIC-0.37□□□□□ -2.47
CCDC88AQ3V6T2 Y_RNA.568-201ENST00000384742 113 ntBASIC-0.37□□□□□ -2.47
CCDC88AQ3V6T2 RNA5SP451-201ENST00000410588 110 ntBASIC-0.37□□□□□ -2.47
CCDC88AQ3V6T2 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC-0.37□□□□□ -2.47
CCDC88AQ3V6T2 USP9YP30-201ENST00000430729 455 ntBASIC-0.37□□□□□ -2.47
CCDC88AQ3V6T2 MIR4639-201ENST00000584938 69 ntBASIC-0.37□□□□□ -2.47
CCDC88AQ3V6T2 AC087685.1-201ENST00000587507 141 ntBASIC-0.37□□□□□ -2.47
CCDC88AQ3V6T2 AC018462.2-201ENST00000605375 395 ntBASIC-0.37□□□□□ -2.47
CCDC88AQ3V6T2 AL359880.1-201ENST00000621879 266 ntBASIC-0.37□□□□□ -2.47
CCDC88AQ3V6T2 Z97988.1-201ENST00000637697 135 ntBASIC-0.37□□□□□ -2.47
CCDC88AQ3V6T2 MTND5P32-201ENST00000560711 1802 ntBASIC-0.37□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 187.5 ms