Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 Y_RNA.92-201ENST00000363043 102 ntBASIC1.51□□□□□ -2.17
COL28A1Q2UY09 Y_RNA.235-201ENST00000364412 102 ntBASIC1.51□□□□□ -2.17
COL28A1Q2UY09 Y_RNA.306-201ENST00000365015 102 ntBASIC1.51□□□□□ -2.17
COL28A1Q2UY09 Y_RNA.312-201ENST00000365089 102 ntBASIC1.51□□□□□ -2.17
COL28A1Q2UY09 Y_RNA.322-201ENST00000365151 102 ntBASIC1.51□□□□□ -2.17
COL28A1Q2UY09 RNA5SP259-201ENST00000365541 109 ntBASIC1.51□□□□□ -2.17
COL28A1Q2UY09 RNU6-662P-201ENST00000384253 104 ntBASIC1.51□□□□□ -2.17
COL28A1Q2UY09 MIR568-201ENST00000385036 95 ntBASIC1.51□□□□□ -2.17
COL28A1Q2UY09 MIR653-201ENST00000385279 96 ntBASIC1.51□□□□□ -2.17
COL28A1Q2UY09 MIR891A-201ENST00000401237 79 ntBASIC1.51□□□□□ -2.17
COL28A1Q2UY09 SNRPGP10-201ENST00000432323 225 ntBASIC1.51□□□□□ -2.17
COL28A1Q2UY09 Y_RNA.650-201ENST00000459002 102 ntBASIC1.51□□□□□ -2.17
COL28A1Q2UY09 RPL39P38-201ENST00000467018 153 ntBASIC1.51□□□□□ -2.17
COL28A1Q2UY09 RNU7-12P-201ENST00000516030 62 ntBASIC1.51□□□□□ -2.17
COL28A1Q2UY09 Y_RNA.777-201ENST00000516982 102 ntBASIC1.51□□□□□ -2.17
COL28A1Q2UY09 SUMO2P16-201ENST00000519475 264 ntBASIC1.51□□□□□ -2.17
COL28A1Q2UY09 Y_RNA.771-201ENST00000598668 102 ntBASIC1.51□□□□□ -2.17
COL28A1Q2UY09 MIR6078-201ENST00000611069 100 ntBASIC1.51□□□□□ -2.17
COL28A1Q2UY09 Y_RNA.789-201ENST00000622480 102 ntBASIC1.51□□□□□ -2.17
COL28A1Q2UY09 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.51□□□□□ -2.17
COL28A1Q2UY09 AC134026.1-201ENST00000623249 2239 ntBASIC1.51□□□□□ -2.17
COL28A1Q2UY09 RNU6-1205P-201ENST00000363625 106 ntBASIC1.5□□□□□ -2.17
COL28A1Q2UY09 Y_RNA.288-201ENST00000364854 92 ntBASIC1.5□□□□□ -2.17
COL28A1Q2UY09 RNU6-1065P-201ENST00000384513 106 ntBASIC1.5□□□□□ -2.17
COL28A1Q2UY09 MIR520E-201ENST00000384867 87 ntBASIC1.5□□□□□ -2.17
COL28A1Q2UY09 RNU6-131P-201ENST00000391144 107 ntBASIC1.5□□□□□ -2.17
COL28A1Q2UY09 BTF3P11-201ENST00000426582 477 ntBASIC1.5□□□□□ -2.17
COL28A1Q2UY09 SNORD2.1-201ENST00000458762 69 ntBASIC1.5□□□□□ -2.17
COL28A1Q2UY09 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.5□□□□□ -2.17
COL28A1Q2UY09 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.5□□□□□ -2.17
COL28A1Q2UY09 Y_RNA.668-201ENST00000516233 93 ntBASIC1.5□□□□□ -2.17
COL28A1Q2UY09 RNU6-902P-201ENST00000517212 91 ntBASIC1.5□□□□□ -2.17
COL28A1Q2UY09 AL008718.3-201ENST00000610217 321 ntBASIC1.5□□□□□ -2.17
COL28A1Q2UY09 JPX_2.1-201ENST00000614161 69 ntBASIC1.5□□□□□ -2.17
COL28A1Q2UY09 snoU18.1-201ENST00000629629 71 ntBASIC1.5□□□□□ -2.17
COL28A1Q2UY09 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.5□□□□□ -2.17
COL28A1Q2UY09 RNU6-1209P-201ENST00000363655 107 ntBASIC1.49□□□□□ -2.17
COL28A1Q2UY09 Y_RNA.352-201ENST00000365439 102 ntBASIC1.49□□□□□ -2.17
COL28A1Q2UY09 RNU6-1289P-201ENST00000384431 106 ntBASIC1.49□□□□□ -2.17
COL28A1Q2UY09 Y_RNA.562-201ENST00000384695 113 ntBASIC1.49□□□□□ -2.17
COL28A1Q2UY09 MIR526A2-201ENST00000390198 65 ntBASIC1.49□□□□□ -2.17
COL28A1Q2UY09 SNX2P2-201ENST00000424553 323 ntBASIC1.49□□□□□ -2.17
COL28A1Q2UY09 SNORD127-201ENST00000458892 86 ntBASIC1.49□□□□□ -2.17
COL28A1Q2UY09 AL513534.2-201ENST00000603836 250 ntBASIC1.49□□□□□ -2.17
COL28A1Q2UY09 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.49□□□□□ -2.17
COL28A1Q2UY09 RNU1-93P-201ENST00000364704 169 ntBASIC1.48□□□□□ -2.17
COL28A1Q2UY09 SNORA2.2-201ENST00000365473 135 ntBASIC1.48□□□□□ -2.17
COL28A1Q2UY09 RNU6-163P-201ENST00000384396 106 ntBASIC1.48□□□□□ -2.17
COL28A1Q2UY09 RN7SKP101-201ENST00000411376 320 ntBASIC1.48□□□□□ -2.17
COL28A1Q2UY09 HMGN2P32-201ENST00000444648 269 ntBASIC1.48□□□□□ -2.17
COL28A1Q2UY09 AC114811.1-201ENST00000507207 168 ntBASIC1.48□□□□□ -2.17
COL28A1Q2UY09 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.48□□□□□ -2.17
COL28A1Q2UY09 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.48□□□□□ -2.17
COL28A1Q2UY09 MIR4778-201ENST00000577635 80 ntBASIC1.48□□□□□ -2.17
COL28A1Q2UY09 MIR151B-201ENST00000584249 96 ntBASIC1.48□□□□□ -2.17
COL28A1Q2UY09 FAM106DP-201ENST00000586416 501 ntBASIC1.48□□□□□ -2.17
COL28A1Q2UY09 AL365434.2-201ENST00000607979 234 ntBASIC1.48□□□□□ -2.17
COL28A1Q2UY09 AL442644.1-201ENST00000454390 3105 ntBASIC1.47□□□□□ -2.17
COL28A1Q2UY09 Y_RNA.242-201ENST00000364473 110 ntBASIC1.47□□□□□ -2.17
COL28A1Q2UY09 RNU6-740P-201ENST00000364734 105 ntBASIC1.47□□□□□ -2.17
COL28A1Q2UY09 snoU2-30.1-201ENST00000365012 70 ntBASIC1.47□□□□□ -2.17
COL28A1Q2UY09 Y_RNA.336-201ENST00000365307 109 ntBASIC1.47□□□□□ -2.17
COL28A1Q2UY09 Y_RNA.393-201ENST00000383936 102 ntBASIC1.47□□□□□ -2.17
COL28A1Q2UY09 RNU6-211P-201ENST00000384047 107 ntBASIC1.47□□□□□ -2.17
COL28A1Q2UY09 RNA5SP496-201ENST00000391240 109 ntBASIC1.47□□□□□ -2.17
COL28A1Q2UY09 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.47□□□□□ -2.17
COL28A1Q2UY09 MIR548H3-201ENST00000408771 118 ntBASIC1.47□□□□□ -2.17
COL28A1Q2UY09 RN7SKP51-201ENST00000410781 304 ntBASIC1.47□□□□□ -2.17
COL28A1Q2UY09 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.47□□□□□ -2.17
COL28A1Q2UY09 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.47□□□□□ -2.17
COL28A1Q2UY09 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.47□□□□□ -2.17
COL28A1Q2UY09 SNORD11-201ENST00000459124 84 ntBASIC1.47□□□□□ -2.17
COL28A1Q2UY09 RNU6-1007P-201ENST00000516586 107 ntBASIC1.47□□□□□ -2.17
COL28A1Q2UY09 SNORD45.4-201ENST00000516629 73 ntBASIC1.47□□□□□ -2.17
COL28A1Q2UY09 RNU6-1116P-201ENST00000517269 99 ntBASIC1.47□□□□□ -2.17
COL28A1Q2UY09 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.47□□□□□ -2.17
COL28A1Q2UY09 AC090049.2-201ENST00000550377 109 ntBASIC1.47□□□□□ -2.17
COL28A1Q2UY09 MIR3937-201ENST00000580135 106 ntBASIC1.47□□□□□ -2.17
COL28A1Q2UY09 MIR4282-201ENST00000583613 67 ntBASIC1.47□□□□□ -2.17
COL28A1Q2UY09 AL162730.1-201ENST00000605734 292 ntBASIC1.47□□□□□ -2.17
COL28A1Q2UY09 U4.1-201ENST00000620349 87 ntBASIC1.47□□□□□ -2.17
COL28A1Q2UY09 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.46□□□□□ -2.18
COL28A1Q2UY09 MIR452-201ENST00000385020 85 ntBASIC1.46□□□□□ -2.18
COL28A1Q2UY09 MIR1323-201ENST00000408090 73 ntBASIC1.46□□□□□ -2.18
COL28A1Q2UY09 RPS27P16-201ENST00000425758 201 ntBASIC1.46□□□□□ -2.18
COL28A1Q2UY09 RPL30P7-201ENST00000479312 323 ntBASIC1.46□□□□□ -2.18
COL28A1Q2UY09 NDUFA4P2-201ENST00000489989 244 ntBASIC1.46□□□□□ -2.18
COL28A1Q2UY09 SNORA31.24-201ENST00000517232 57 ntBASIC1.46□□□□□ -2.18
COL28A1Q2UY09 AC012433.1-201ENST00000588916 398 ntBASIC1.46□□□□□ -2.18
COL28A1Q2UY09 AL021707.8-201ENST00000609428 183 ntBASIC1.46□□□□□ -2.18
COL28A1Q2UY09 MIR6788-201ENST00000618842 66 ntBASIC1.46□□□□□ -2.18
COL28A1Q2UY09 AL121890.5-201ENST00000620848 304 ntBASIC1.46□□□□□ -2.18
COL28A1Q2UY09 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
COL28A1Q2UY09 Y_RNA.14-201ENST00000362415 103 ntBASIC1.45□□□□□ -2.18
COL28A1Q2UY09 RNU6-1084P-201ENST00000362498 107 ntBASIC1.45□□□□□ -2.18
COL28A1Q2UY09 SNORD50B-201ENST00000364995 70 ntBASIC1.45□□□□□ -2.18
COL28A1Q2UY09 MIR517C-201ENST00000385103 95 ntBASIC1.45□□□□□ -2.18
COL28A1Q2UY09 MLLT10P1-201ENST00000418346 262 ntBASIC1.45□□□□□ -2.18
COL28A1Q2UY09 PIGPP3-201ENST00000425307 415 ntBASIC1.45□□□□□ -2.18
COL28A1Q2UY09 AC093850.1-201ENST00000454121 251 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 1581.1 ms