Protein–RNA interactions for Protein: P49917

LIG4, DNA ligase 4, humanhuman

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4P49917 RNU7-21P-201ENST00000459430 62 ntBASIC1.09□□□□□ -2.23
LIG4P49917 AC098869.1-201ENST00000481627 292 ntBASIC1.09□□□□□ -2.23
LIG4P49917 RNY3P15-201ENST00000516297 97 ntBASIC1.09□□□□□ -2.23
LIG4P49917 RNU7-43P-201ENST00000516554 64 ntBASIC1.09□□□□□ -2.23
LIG4P49917 MIR4680-201ENST00000580906 66 ntBASIC1.09□□□□□ -2.23
LIG4P49917 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC1.09□□□□□ -2.23
LIG4P49917 AC008163.1-202ENST00000636004 2889 ntBASIC1.09□□□□□ -2.24
LIG4P49917 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.09□□□□□ -2.24
LIG4P49917 AL442644.1-201ENST00000454390 3105 ntBASIC1.09□□□□□ -2.24
LIG4P49917 RNA5SP264-201ENST00000363115 107 ntBASIC1.08□□□□□ -2.24
LIG4P49917 Y_RNA.210-201ENST00000364161 110 ntBASIC1.08□□□□□ -2.24
LIG4P49917 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.08□□□□□ -2.24
LIG4P49917 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.08□□□□□ -2.24
LIG4P49917 AC008507.4-201ENST00000585464 127 ntBASIC1.08□□□□□ -2.24
LIG4P49917 MIR8070-201ENST00000616510 88 ntBASIC1.08□□□□□ -2.24
LIG4P49917 Y_RNA.19-201ENST00000362462 99 ntBASIC1.07□□□□□ -2.24
LIG4P49917 snoU2_19.2-201ENST00000363024 80 ntBASIC1.07□□□□□ -2.24
LIG4P49917 Y_RNA.276-201ENST00000364732 109 ntBASIC1.07□□□□□ -2.24
LIG4P49917 Y_RNA.541-201ENST00000384640 113 ntBASIC1.07□□□□□ -2.24
LIG4P49917 SNORD11-201ENST00000459124 84 ntBASIC1.07□□□□□ -2.24
LIG4P49917 RNU2-31P-201ENST00000516954 155 ntBASIC1.07□□□□□ -2.24
LIG4P49917 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.07□□□□□ -2.24
LIG4P49917 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC1.07□□□□□ -2.24
LIG4P49917 AL512605.2-201ENST00000592972 256 ntBASIC1.07□□□□□ -2.24
LIG4P49917 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.07□□□□□ -2.24
LIG4P49917 SNORA25.3-201ENST00000363205 127 ntBASIC1.06□□□□□ -2.24
LIG4P49917 RNU6-1205P-201ENST00000363625 106 ntBASIC1.06□□□□□ -2.24
LIG4P49917 Y_RNA.202-201ENST00000364083 110 ntBASIC1.06□□□□□ -2.24
LIG4P49917 RNU6-268P-201ENST00000364174 107 ntBASIC1.06□□□□□ -2.24
LIG4P49917 RNU6-806P-201ENST00000365147 105 ntBASIC1.06□□□□□ -2.24
LIG4P49917 MIR215-201ENST00000384858 110 ntBASIC1.06□□□□□ -2.24
LIG4P49917 SNORD72-201ENST00000390994 80 ntBASIC1.06□□□□□ -2.24
LIG4P49917 RPL21P38-201ENST00000418090 167 ntBASIC1.06□□□□□ -2.24
LIG4P49917 SNRPGP14-201ENST00000435400 219 ntBASIC1.06□□□□□ -2.24
LIG4P49917 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.06□□□□□ -2.24
LIG4P49917 MTND4LP30-201ENST00000454092 297 ntBASIC1.06□□□□□ -2.24
LIG4P49917 SNORD124-201ENST00000459577 104 ntBASIC1.06□□□□□ -2.24
LIG4P49917 RNU6-1007P-201ENST00000516586 107 ntBASIC1.06□□□□□ -2.24
LIG4P49917 AL356055.1-201ENST00000602528 446 ntBASIC1.06□□□□□ -2.24
LIG4P49917 AC136443.5-201ENST00000603741 370 ntBASIC1.06□□□□□ -2.24
LIG4P49917 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.06□□□□□ -2.24
LIG4P49917 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
LIG4P49917 MIR103A2-201ENST00000362154 78 ntBASIC1.05□□□□□ -2.24
LIG4P49917 SNORA25.1-201ENST00000362326 128 ntBASIC1.05□□□□□ -2.24
LIG4P49917 Y_RNA.152-201ENST00000363578 100 ntBASIC1.05□□□□□ -2.24
LIG4P49917 RNA5SP48-201ENST00000363969 126 ntBASIC1.05□□□□□ -2.24
LIG4P49917 SNORA22-201ENST00000383907 134 ntBASIC1.05□□□□□ -2.24
LIG4P49917 RNU6-144P-201ENST00000383951 107 ntBASIC1.05□□□□□ -2.24
LIG4P49917 RNU6-514P-201ENST00000384208 107 ntBASIC1.05□□□□□ -2.24
LIG4P49917 SNORA22C-201ENST00000384614 134 ntBASIC1.05□□□□□ -2.24
LIG4P49917 SNORA53-201ENST00000391141 249 ntBASIC1.05□□□□□ -2.24
LIG4P49917 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.05□□□□□ -2.24
LIG4P49917 RNU7-90P-201ENST00000459216 62 ntBASIC1.05□□□□□ -2.24
LIG4P49917 Y_RNA.637-201ENST00000459424 114 ntBASIC1.05□□□□□ -2.24
LIG4P49917 AP003716.2-201ENST00000528260 108 ntBASIC1.05□□□□□ -2.24
LIG4P49917 HSPE1P19-201ENST00000603327 295 ntBASIC1.05□□□□□ -2.24
LIG4P49917 AC037487.3-201ENST00000606668 112 ntBASIC1.05□□□□□ -2.24
LIG4P49917 Pinc.1-201ENST00000616452 154 ntBASIC1.05□□□□□ -2.24
LIG4P49917 AC013791.1-201ENST00000616619 62 ntBASIC1.05□□□□□ -2.24
LIG4P49917 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.05□□□□□ -2.24
LIG4P49917 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.05□□□□□ -2.24
LIG4P49917 AL391516.1-201ENST00000554380 2449 ntBASIC1.05□□□□□ -2.24
LIG4P49917 MIR96-201ENST00000362288 78 ntBASIC1.04□□□□□ -2.24
LIG4P49917 Y_RNA.26-201ENST00000362539 101 ntBASIC1.04□□□□□ -2.24
LIG4P49917 RNU6-326P-201ENST00000365480 107 ntBASIC1.04□□□□□ -2.24
LIG4P49917 AL603910.2-201ENST00000407268 136 ntBASIC1.04□□□□□ -2.24
LIG4P49917 MIR1276-201ENST00000408707 83 ntBASIC1.04□□□□□ -2.24
LIG4P49917 MRPL35P3-201ENST00000421557 364 ntBASIC1.04□□□□□ -2.24
LIG4P49917 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.04□□□□□ -2.24
LIG4P49917 RNU6-830P-201ENST00000516353 107 ntBASIC1.04□□□□□ -2.24
LIG4P49917 Y_RNA.701-201ENST00000516812 110 ntBASIC1.04□□□□□ -2.24
LIG4P49917 MIR548AR-201ENST00000582191 57 ntBASIC1.04□□□□□ -2.24
LIG4P49917 AC012676.2-201ENST00000619258 186 ntBASIC1.04□□□□□ -2.24
LIG4P49917 RNU6-1272P-201ENST00000362776 107 ntBASIC1.03□□□□□ -2.24
LIG4P49917 Y_RNA.64-201ENST00000362845 102 ntBASIC1.03□□□□□ -2.24
LIG4P49917 Y_RNA.153-201ENST00000363615 91 ntBASIC1.03□□□□□ -2.24
LIG4P49917 SNORD114-24-201ENST00000365029 72 ntBASIC1.03□□□□□ -2.24
LIG4P49917 Y_RNA.330-201ENST00000365230 109 ntBASIC1.03□□□□□ -2.24
LIG4P49917 SNORD28B-201ENST00000390993 75 ntBASIC1.03□□□□□ -2.24
LIG4P49917 MIR1185-1-201ENST00000408598 86 ntBASIC1.03□□□□□ -2.24
LIG4P49917 AC091959.1-201ENST00000495857 238 ntBASIC1.03□□□□□ -2.24
LIG4P49917 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.03□□□□□ -2.24
LIG4P49917 UBL5P1-201ENST00000507979 193 ntBASIC1.03□□□□□ -2.24
LIG4P49917 RNU6-1143P-201ENST00000516125 104 ntBASIC1.03□□□□□ -2.24
LIG4P49917 RNU6-1137P-201ENST00000517073 99 ntBASIC1.03□□□□□ -2.24
LIG4P49917 AP003733.2-201ENST00000529409 171 ntBASIC1.03□□□□□ -2.24
LIG4P49917 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.03□□□□□ -2.24
LIG4P49917 AC008133.2-201ENST00000624540 351 ntBASIC1.03□□□□□ -2.24
LIG4P49917 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.03□□□□□ -2.25
LIG4P49917 Y_RNA.238-201ENST00000364441 102 ntBASIC1.02□□□□□ -2.25
LIG4P49917 Y_RNA.242-201ENST00000364473 110 ntBASIC1.02□□□□□ -2.25
LIG4P49917 MIR200A-201ENST00000384875 90 ntBASIC1.02□□□□□ -2.25
LIG4P49917 RNU6-383P-201ENST00000410864 94 ntBASIC1.02□□□□□ -2.25
LIG4P49917 MTCYBP6-201ENST00000441810 138 ntBASIC1.02□□□□□ -2.25
LIG4P49917 RN7SKP164-201ENST00000516138 266 ntBASIC1.02□□□□□ -2.25
LIG4P49917 SEPT14P17-201ENST00000617978 177 ntBASIC1.02□□□□□ -2.25
LIG4P49917 AC015726.2-201ENST00000620112 122 ntBASIC1.02□□□□□ -2.25
LIG4P49917 SNORA25.9-201ENST00000365087 128 ntBASIC1.01□□□□□ -2.25
LIG4P49917 SNORA33.2-201ENST00000365413 134 ntBASIC1.01□□□□□ -2.25
LIG4P49917 RNU6-662P-201ENST00000384253 104 ntBASIC1.01□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 238 ms