Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC084364.2-201ENST00000546924 395 ntBASIC1.65□□□□□ -2.15
LMX1BO60663 AC097639.2-201ENST00000603159 172 ntBASIC1.65□□□□□ -2.15
LMX1BO60663 AC242852.1-201ENST00000612151 96 ntBASIC1.65□□□□□ -2.15
LMX1BO60663 AL591926.4-201ENST00000616895 298 ntBASIC1.65□□□□□ -2.15
LMX1BO60663 AC244015.1-201ENST00000622301 99 ntBASIC1.65□□□□□ -2.15
LMX1BO60663 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.65□□□□□ -2.15
LMX1BO60663 MTND1P7-201ENST00000632801 297 ntBASIC1.65□□□□□ -2.15
LMX1BO60663 U2.22-201ENST00000636441 106 ntBASIC1.65□□□□□ -2.15
LMX1BO60663 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.65□□□□□ -2.15
LMX1BO60663 Y_RNA.91-201ENST00000363042 107 ntBASIC1.64□□□□□ -2.15
LMX1BO60663 RNU6-978P-201ENST00000364371 103 ntBASIC1.64□□□□□ -2.15
LMX1BO60663 RNU6-1138P-201ENST00000365359 106 ntBASIC1.64□□□□□ -2.15
LMX1BO60663 RNU11-3P-201ENST00000391111 133 ntBASIC1.64□□□□□ -2.15
LMX1BO60663 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.64□□□□□ -2.15
LMX1BO60663 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.64□□□□□ -2.15
LMX1BO60663 AC108667.1-201ENST00000428618 249 ntBASIC1.64□□□□□ -2.15
LMX1BO60663 AC003989.2-201ENST00000440224 169 ntBASIC1.64□□□□□ -2.15
LMX1BO60663 HMGN1P7-201ENST00000491722 313 ntBASIC1.64□□□□□ -2.15
LMX1BO60663 RPL23AP63-201ENST00000498752 471 ntBASIC1.64□□□□□ -2.15
LMX1BO60663 AC107027.2-201ENST00000512197 115 ntBASIC1.64□□□□□ -2.15
LMX1BO60663 RNA5SP272-201ENST00000516095 111 ntBASIC1.64□□□□□ -2.15
LMX1BO60663 SNORA31.10-201ENST00000516482 106 ntBASIC1.64□□□□□ -2.15
LMX1BO60663 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.64□□□□□ -2.15
LMX1BO60663 AL160236.1-201ENST00000556317 195 ntBASIC1.64□□□□□ -2.15
LMX1BO60663 MIR2681-201ENST00000581814 105 ntBASIC1.64□□□□□ -2.15
LMX1BO60663 DNAJC19P2-201ENST00000593340 302 ntBASIC1.64□□□□□ -2.15
LMX1BO60663 uc_338.20-201ENST00000621563 178 ntBASIC1.64□□□□□ -2.15
LMX1BO60663 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.63□□□□□ -2.15
LMX1BO60663 Y_RNA.486-201ENST00000384398 107 ntBASIC1.63□□□□□ -2.15
LMX1BO60663 Y_RNA.568-201ENST00000384742 113 ntBASIC1.63□□□□□ -2.15
LMX1BO60663 MIR522-201ENST00000385071 87 ntBASIC1.63□□□□□ -2.15
LMX1BO60663 RNA5SP323-201ENST00000391094 133 ntBASIC1.63□□□□□ -2.15
LMX1BO60663 HMGN2P19-201ENST00000425149 265 ntBASIC1.63□□□□□ -2.15
LMX1BO60663 RNU6-197P-201ENST00000516680 100 ntBASIC1.63□□□□□ -2.15
LMX1BO60663 RNU7-149P-201ENST00000516739 59 ntBASIC1.63□□□□□ -2.15
LMX1BO60663 RNU6-789P-201ENST00000517105 102 ntBASIC1.63□□□□□ -2.15
LMX1BO60663 SNORA31.25-201ENST00000517242 134 ntBASIC1.63□□□□□ -2.15
LMX1BO60663 SUB1P4-201ENST00000566062 339 ntBASIC1.63□□□□□ -2.15
LMX1BO60663 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.63□□□□□ -2.15
LMX1BO60663 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
LMX1BO60663 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.63□□□□□ -2.15
LMX1BO60663 Y_RNA.66-201ENST00000362862 102 ntBASIC1.62□□□□□ -2.15
LMX1BO60663 SNORA63D-201ENST00000364359 132 ntBASIC1.62□□□□□ -2.15
LMX1BO60663 Y_RNA.251-201ENST00000364551 99 ntBASIC1.62□□□□□ -2.15
LMX1BO60663 Y_RNA.634-201ENST00000364811 113 ntBASIC1.62□□□□□ -2.15
LMX1BO60663 RNU4-11P-201ENST00000365287 132 ntBASIC1.62□□□□□ -2.15
LMX1BO60663 Y_RNA.337-201ENST00000365312 102 ntBASIC1.62□□□□□ -2.15
LMX1BO60663 RNU6-81P-201ENST00000365608 104 ntBASIC1.62□□□□□ -2.15
LMX1BO60663 RNU6-1336P-201ENST00000383886 109 ntBASIC1.62□□□□□ -2.15
LMX1BO60663 SNORA48.1-201ENST00000390879 135 ntBASIC1.62□□□□□ -2.15
LMX1BO60663 SNORD72-201ENST00000390994 80 ntBASIC1.62□□□□□ -2.15
LMX1BO60663 RNA5SP501-201ENST00000410990 112 ntBASIC1.62□□□□□ -2.15
LMX1BO60663 Y_RNA.621-201ENST00000411065 96 ntBASIC1.62□□□□□ -2.15
LMX1BO60663 SNRPGP10-201ENST00000432323 225 ntBASIC1.62□□□□□ -2.15
LMX1BO60663 AL049830.1-201ENST00000468034 425 ntBASIC1.62□□□□□ -2.15
LMX1BO60663 RNU6-426P-201ENST00000516464 97 ntBASIC1.62□□□□□ -2.15
LMX1BO60663 AP002004.2-201ENST00000531656 154 ntBASIC1.62□□□□□ -2.15
LMX1BO60663 MIR5094-201ENST00000578766 85 ntBASIC1.62□□□□□ -2.15
LMX1BO60663 MIR378D2-201ENST00000580636 98 ntBASIC1.62□□□□□ -2.15
LMX1BO60663 MIR4762-201ENST00000585261 75 ntBASIC1.62□□□□□ -2.15
LMX1BO60663 AC120024.3-201ENST00000603167 156 ntBASIC1.62□□□□□ -2.15
LMX1BO60663 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
LMX1BO60663 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
LMX1BO60663 RNU6-1019P-201ENST00000364424 107 ntBASIC1.61□□□□□ -2.15
LMX1BO60663 RNU6-1082P-201ENST00000364574 107 ntBASIC1.61□□□□□ -2.15
LMX1BO60663 SNORA16.1-201ENST00000364597 132 ntBASIC1.61□□□□□ -2.15
LMX1BO60663 SNORA16B-201ENST00000364674 135 ntBASIC1.61□□□□□ -2.15
LMX1BO60663 RNU6-597P-201ENST00000365620 102 ntBASIC1.61□□□□□ -2.15
LMX1BO60663 Y_RNA.393-201ENST00000383936 102 ntBASIC1.61□□□□□ -2.15
LMX1BO60663 Y_RNA.432-201ENST00000384087 111 ntBASIC1.61□□□□□ -2.15
LMX1BO60663 RNU6-296P-201ENST00000384608 107 ntBASIC1.61□□□□□ -2.15
LMX1BO60663 RNA5SP465-201ENST00000391195 109 ntBASIC1.61□□□□□ -2.15
LMX1BO60663 FTH1P12-201ENST00000432137 551 ntBASIC1.61□□□□□ -2.15
LMX1BO60663 RNU7-94P-201ENST00000459576 63 ntBASIC1.61□□□□□ -2.15
LMX1BO60663 AC092991.1-201ENST00000477176 376 ntBASIC1.61□□□□□ -2.15
LMX1BO60663 OR9P1P-201ENST00000496431 281 ntBASIC1.61□□□□□ -2.15
LMX1BO60663 RPS29P11-201ENST00000496507 171 ntBASIC1.61□□□□□ -2.15
LMX1BO60663 MRPS17P9-201ENST00000511924 393 ntBASIC1.61□□□□□ -2.15
LMX1BO60663 RNU6-1299P-201ENST00000516316 100 ntBASIC1.61□□□□□ -2.15
LMX1BO60663 SNORA25.15-201ENST00000516487 89 ntBASIC1.61□□□□□ -2.15
LMX1BO60663 RNA5SP153-201ENST00000516498 76 ntBASIC1.61□□□□□ -2.15
LMX1BO60663 RNU7-193P-201ENST00000516723 65 ntBASIC1.61□□□□□ -2.15
LMX1BO60663 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.61□□□□□ -2.15
LMX1BO60663 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.61□□□□□ -2.15
LMX1BO60663 MIR4781-201ENST00000585250 76 ntBASIC1.61□□□□□ -2.15
LMX1BO60663 AC008507.4-201ENST00000585464 127 ntBASIC1.61□□□□□ -2.15
LMX1BO60663 Pinc.1-201ENST00000616452 154 ntBASIC1.61□□□□□ -2.15
LMX1BO60663 MIR8054-201ENST00000620877 86 ntBASIC1.61□□□□□ -2.15
LMX1BO60663 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
LMX1BO60663 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.6□□□□□ -2.15
LMX1BO60663 MIRLET7C-201ENST00000362160 84 ntBASIC1.6□□□□□ -2.15
LMX1BO60663 MIR378A-201ENST00000362177 66 ntBASIC1.6□□□□□ -2.15
LMX1BO60663 MIR126-201ENST00000362291 85 ntBASIC1.6□□□□□ -2.15
LMX1BO60663 Y_RNA.226-201ENST00000364337 114 ntBASIC1.6□□□□□ -2.15
LMX1BO60663 U8.5-201ENST00000364528 136 ntBASIC1.6□□□□□ -2.15
LMX1BO60663 SNORD50B-201ENST00000364995 70 ntBASIC1.6□□□□□ -2.15
LMX1BO60663 SNORA4.2-201ENST00000365313 147 ntBASIC1.6□□□□□ -2.15
LMX1BO60663 Y_RNA.488-201ENST00000384403 102 ntBASIC1.6□□□□□ -2.15
LMX1BO60663 SNORA19-201ENST00000384737 128 ntBASIC1.6□□□□□ -2.15
LMX1BO60663 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 116 ms