Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 MIR520A-201ENST00000384862 85 ntBASIC2.11□□□□□ -2.07
HOXA3O43365 RNU2-7P-201ENST00000410794 178 ntBASIC2.11□□□□□ -2.07
HOXA3O43365 MTATP6P29-201ENST00000415057 132 ntBASIC2.11□□□□□ -2.07
HOXA3O43365 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.11□□□□□ -2.07
HOXA3O43365 MTATP6P21-201ENST00000440681 189 ntBASIC2.11□□□□□ -2.07
HOXA3O43365 SNORA9.3-201ENST00000516383 129 ntBASIC2.11□□□□□ -2.07
HOXA3O43365 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.11□□□□□ -2.07
HOXA3O43365 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
HOXA3O43365 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.1□□□□□ -2.07
HOXA3O43365 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
HOXA3O43365 RNU6-112P-201ENST00000363599 104 ntBASIC2.1□□□□□ -2.07
HOXA3O43365 SNORA3A-201ENST00000364113 130 ntBASIC2.1□□□□□ -2.07
HOXA3O43365 Y_RNA.410-201ENST00000383992 113 ntBASIC2.1□□□□□ -2.07
HOXA3O43365 RNU1-52P-201ENST00000384190 164 ntBASIC2.1□□□□□ -2.07
HOXA3O43365 SNORD20-201ENST00000384550 80 ntBASIC2.1□□□□□ -2.07
HOXA3O43365 Y_RNA.563-201ENST00000384707 108 ntBASIC2.1□□□□□ -2.07
HOXA3O43365 CALM2P4-201ENST00000430810 426 ntBASIC2.1□□□□□ -2.07
HOXA3O43365 HMGN2P32-201ENST00000444648 269 ntBASIC2.1□□□□□ -2.07
HOXA3O43365 CYCTP-201ENST00000504253 315 ntBASIC2.1□□□□□ -2.07
HOXA3O43365 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.1□□□□□ -2.07
HOXA3O43365 RNU6-1149P-201ENST00000516810 97 ntBASIC2.1□□□□□ -2.07
HOXA3O43365 Y_RNA.712-201ENST00000517011 92 ntBASIC2.1□□□□□ -2.07
HOXA3O43365 AL022345.2-201ENST00000606307 135 ntBASIC2.1□□□□□ -2.07
HOXA3O43365 AC027279.3-201ENST00000625055 122 ntBASIC2.1□□□□□ -2.07
HOXA3O43365 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.1□□□□□ -2.07
HOXA3O43365 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
HOXA3O43365 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
HOXA3O43365 SNORD115-28-201ENST00000363931 81 ntBASIC2.09□□□□□ -2.07
HOXA3O43365 RNU1-51P-201ENST00000365345 176 ntBASIC2.09□□□□□ -2.07
HOXA3O43365 RNU6-296P-201ENST00000384608 107 ntBASIC2.09□□□□□ -2.07
HOXA3O43365 RNU6-1031P-201ENST00000384773 107 ntBASIC2.09□□□□□ -2.07
HOXA3O43365 U8.16-201ENST00000391279 133 ntBASIC2.09□□□□□ -2.07
HOXA3O43365 RPS29P6-201ENST00000438196 145 ntBASIC2.09□□□□□ -2.07
HOXA3O43365 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.09□□□□□ -2.07
HOXA3O43365 Y_RNA.651-201ENST00000459380 103 ntBASIC2.09□□□□□ -2.07
HOXA3O43365 RNA5SP236-201ENST00000516169 116 ntBASIC2.09□□□□□ -2.07
HOXA3O43365 SCARNA16.3-201ENST00000516595 184 ntBASIC2.09□□□□□ -2.07
HOXA3O43365 RNA5SP168-201ENST00000516642 112 ntBASIC2.09□□□□□ -2.07
HOXA3O43365 SNORA31.15-201ENST00000516771 132 ntBASIC2.09□□□□□ -2.07
HOXA3O43365 SCARNA15-202ENST00000516881 127 ntBASIC2.09□□□□□ -2.07
HOXA3O43365 RNA5SP437-201ENST00000517249 129 ntBASIC2.09□□□□□ -2.07
HOXA3O43365 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.09□□□□□ -2.07
HOXA3O43365 AL590808.1-201ENST00000618696 141 ntBASIC2.09□□□□□ -2.07
HOXA3O43365 U1.36-201ENST00000620684 176 ntBASIC2.09□□□□□ -2.07
HOXA3O43365 MIR376A2-201ENST00000636782 80 ntBASIC2.09□□□□□ -2.07
HOXA3O43365 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.08□□□□□ -2.08
HOXA3O43365 Y_RNA.37-201ENST00000362606 108 ntBASIC2.08□□□□□ -2.08
HOXA3O43365 RNU6-647P-201ENST00000364243 107 ntBASIC2.08□□□□□ -2.08
HOXA3O43365 RNU6-1189P-201ENST00000383958 107 ntBASIC2.08□□□□□ -2.08
HOXA3O43365 MIR1261-201ENST00000408659 82 ntBASIC2.08□□□□□ -2.08
HOXA3O43365 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.08□□□□□ -2.08
HOXA3O43365 RPL23AP63-201ENST00000498752 471 ntBASIC2.08□□□□□ -2.08
HOXA3O43365 RNU6-1061P-201ENST00000516530 99 ntBASIC2.08□□□□□ -2.08
HOXA3O43365 SNORA31.25-201ENST00000517242 134 ntBASIC2.08□□□□□ -2.08
HOXA3O43365 AC133485.4-201ENST00000561835 220 ntBASIC2.08□□□□□ -2.08
HOXA3O43365 AC138907.4-201ENST00000570107 226 ntBASIC2.08□□□□□ -2.08
HOXA3O43365 MIR5197-201ENST00000583721 112 ntBASIC2.08□□□□□ -2.08
HOXA3O43365 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
HOXA3O43365 SNORD38C-201ENST00000384381 69 ntBASIC2.07□□□□□ -2.08
HOXA3O43365 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.07□□□□□ -2.08
HOXA3O43365 AL445646.1-201ENST00000431784 216 ntBASIC2.07□□□□□ -2.08
HOXA3O43365 AL021397.1-201ENST00000451806 248 ntBASIC2.07□□□□□ -2.08
HOXA3O43365 RNU6-772P-201ENST00000516042 105 ntBASIC2.07□□□□□ -2.08
HOXA3O43365 RNA5SP282-201ENST00000516355 108 ntBASIC2.07□□□□□ -2.08
HOXA3O43365 RNU7-193P-201ENST00000516723 65 ntBASIC2.07□□□□□ -2.08
HOXA3O43365 SNORD53-201ENST00000579969 78 ntBASIC2.07□□□□□ -2.08
HOXA3O43365 AC015726.2-201ENST00000620112 122 ntBASIC2.07□□□□□ -2.08
HOXA3O43365 AC064859.1-201ENST00000624741 174 ntBASIC2.07□□□□□ -2.08
HOXA3O43365 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
HOXA3O43365 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.06□□□□□ -2.08
HOXA3O43365 RNU6-834P-201ENST00000362367 110 ntBASIC2.06□□□□□ -2.08
HOXA3O43365 SNORA2.2-201ENST00000365473 135 ntBASIC2.06□□□□□ -2.08
HOXA3O43365 RNU6-424P-201ENST00000384367 105 ntBASIC2.06□□□□□ -2.08
HOXA3O43365 Y_RNA.617-201ENST00000410920 90 ntBASIC2.06□□□□□ -2.08
HOXA3O43365 RNA5SP450-201ENST00000411206 102 ntBASIC2.06□□□□□ -2.08
HOXA3O43365 RNU6-938P-201ENST00000411285 103 ntBASIC2.06□□□□□ -2.08
HOXA3O43365 AC007064.1-201ENST00000412238 351 ntBASIC2.06□□□□□ -2.08
HOXA3O43365 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.06□□□□□ -2.08
HOXA3O43365 RNU7-12P-201ENST00000516030 62 ntBASIC2.06□□□□□ -2.08
HOXA3O43365 RNA5SP320-201ENST00000516263 124 ntBASIC2.06□□□□□ -2.08
HOXA3O43365 RNA5SP24-201ENST00000516478 95 ntBASIC2.06□□□□□ -2.08
HOXA3O43365 SNORD36C-201ENST00000516733 66 ntBASIC2.06□□□□□ -2.08
HOXA3O43365 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.06□□□□□ -2.08
HOXA3O43365 MIR4529-201ENST00000578110 78 ntBASIC2.06□□□□□ -2.08
HOXA3O43365 U4.3-201ENST00000621047 82 ntBASIC2.06□□□□□ -2.08
HOXA3O43365 MIR3914-2-201ENST00000637339 95 ntBASIC2.06□□□□□ -2.08
HOXA3O43365 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.06□□□□□ -2.08
HOXA3O43365 AC007336.1-201ENST00000576365 3828 ntBASIC2.05□□□□□ -2.08
HOXA3O43365 RNU6-833P-201ENST00000363486 107 ntBASIC2.05□□□□□ -2.08
HOXA3O43365 RNU6-215P-201ENST00000365169 102 ntBASIC2.05□□□□□ -2.08
HOXA3O43365 RNU6-1056P-201ENST00000383996 107 ntBASIC2.05□□□□□ -2.08
HOXA3O43365 SNORA70B-201ENST00000384210 135 ntBASIC2.05□□□□□ -2.08
HOXA3O43365 MIR27B-201ENST00000385129 97 ntBASIC2.05□□□□□ -2.08
HOXA3O43365 Y_RNA.630-201ENST00000411370 108 ntBASIC2.05□□□□□ -2.08
HOXA3O43365 AC015922.2-201ENST00000435593 184 ntBASIC2.05□□□□□ -2.08
HOXA3O43365 RNA5SP481-201ENST00000516814 122 ntBASIC2.05□□□□□ -2.08
HOXA3O43365 AP003484.1-201ENST00000530974 250 ntBASIC2.05□□□□□ -2.08
HOXA3O43365 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC2.05□□□□□ -2.08
HOXA3O43365 AC010297.1-201ENST00000623948 149 ntBASIC2.05□□□□□ -2.08
HOXA3O43365 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 248.2 ms