Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 SERF1AP1-201ENST00000514575 187 ntBASIC1.38□□□□□ -2.19
HOXC11O43248 Y_RNA.673-201ENST00000516306 88 ntBASIC1.38□□□□□ -2.19
HOXC11O43248 RNU6-635P-201ENST00000516651 102 ntBASIC1.38□□□□□ -2.19
HOXC11O43248 SCARNA24.2-201ENST00000516968 130 ntBASIC1.38□□□□□ -2.19
HOXC11O43248 SNORA70.22-201ENST00000517160 124 ntBASIC1.38□□□□□ -2.19
HOXC11O43248 AC008269.2-201ENST00000561915 1105 ntBASIC1.38□□□□□ -2.19
HOXC11O43248 MIR3660-201ENST00000584845 100 ntBASIC1.38□□□□□ -2.19
HOXC11O43248 AC022140.2-201ENST00000623500 188 ntBASIC1.38□□□□□ -2.19
HOXC11O43248 MIR367-201ENST00000362299 68 ntBASIC1.37□□□□□ -2.19
HOXC11O43248 Y_RNA.293-201ENST00000364908 93 ntBASIC1.37□□□□□ -2.19
HOXC11O43248 RNU6-662P-201ENST00000384253 104 ntBASIC1.37□□□□□ -2.19
HOXC11O43248 MIR499A-201ENST00000384903 122 ntBASIC1.37□□□□□ -2.19
HOXC11O43248 MIR1287-201ENST00000408492 90 ntBASIC1.37□□□□□ -2.19
HOXC11O43248 RNU6-1203P-201ENST00000410703 110 ntBASIC1.37□□□□□ -2.19
HOXC11O43248 RNU6-1054P-201ENST00000411293 104 ntBASIC1.37□□□□□ -2.19
HOXC11O43248 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.37□□□□□ -2.19
HOXC11O43248 MTND5P22-201ENST00000458380 195 ntBASIC1.37□□□□□ -2.19
HOXC11O43248 Y_RNA.637-201ENST00000459424 114 ntBASIC1.37□□□□□ -2.19
HOXC11O43248 RNU6-1338P-201ENST00000516328 91 ntBASIC1.37□□□□□ -2.19
HOXC11O43248 RNU7-40P-201ENST00000516397 64 ntBASIC1.37□□□□□ -2.19
HOXC11O43248 SNORA18.7-201ENST00000516910 131 ntBASIC1.37□□□□□ -2.19
HOXC11O43248 MIR5692C2-201ENST00000577959 77 ntBASIC1.37□□□□□ -2.19
HOXC11O43248 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.37□□□□□ -2.19
HOXC11O43248 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.37□□□□□ -2.19
HOXC11O43248 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.36□□□□□ -2.19
HOXC11O43248 SNORA25-201ENST00000384384 134 ntBASIC1.36□□□□□ -2.19
HOXC11O43248 MIR606-201ENST00000384851 96 ntBASIC1.36□□□□□ -2.19
HOXC11O43248 AC245047.7-201ENST00000440265 293 ntBASIC1.36□□□□□ -2.19
HOXC11O43248 TRBVB-201ENST00000477100 408 ntBASIC1.36□□□□□ -2.19
HOXC11O43248 AC048334.1-201ENST00000477975 159 ntBASIC1.36□□□□□ -2.19
HOXC11O43248 NDUFA4P2-201ENST00000489989 244 ntBASIC1.36□□□□□ -2.19
HOXC11O43248 SNORA74.3-201ENST00000517108 154 ntBASIC1.36□□□□□ -2.19
HOXC11O43248 DEFB108E-201ENST00000524692 240 ntBASIC1.36□□□□□ -2.19
HOXC11O43248 MIR4724-201ENST00000579485 89 ntBASIC1.36□□□□□ -2.19
HOXC11O43248 AL022345.2-201ENST00000606307 135 ntBASIC1.36□□□□□ -2.19
HOXC11O43248 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.36□□□□□ -2.19
HOXC11O43248 RNU6-238P-201ENST00000363313 106 ntBASIC1.35□□□□□ -2.19
HOXC11O43248 SNORA25.9-201ENST00000365087 128 ntBASIC1.35□□□□□ -2.19
HOXC11O43248 MIR520C-201ENST00000385005 87 ntBASIC1.35□□□□□ -2.19
HOXC11O43248 MIR618-201ENST00000385287 98 ntBASIC1.35□□□□□ -2.19
HOXC11O43248 SNORA40.6-201ENST00000391153 128 ntBASIC1.35□□□□□ -2.19
HOXC11O43248 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.35□□□□□ -2.19
HOXC11O43248 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.35□□□□□ -2.19
HOXC11O43248 RNA5SP61-201ENST00000516453 100 ntBASIC1.35□□□□□ -2.19
HOXC11O43248 BX284668.6-201ENST00000606899 438 ntBASIC1.35□□□□□ -2.19
HOXC11O43248 MIR6078-201ENST00000611069 100 ntBASIC1.35□□□□□ -2.19
HOXC11O43248 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.35□□□□□ -2.19
HOXC11O43248 RNU6-694P-201ENST00000364071 147 ntBASIC1.34□□□□□ -2.19
HOXC11O43248 RNU6-53P-201ENST00000365367 106 ntBASIC1.34□□□□□ -2.19
HOXC11O43248 RNU6-910P-201ENST00000390844 107 ntBASIC1.34□□□□□ -2.19
HOXC11O43248 RNA5SP496-201ENST00000391240 109 ntBASIC1.34□□□□□ -2.19
HOXC11O43248 MIR1302-6-201ENST00000408466 90 ntBASIC1.34□□□□□ -2.19
HOXC11O43248 MIR1276-201ENST00000408707 83 ntBASIC1.34□□□□□ -2.19
HOXC11O43248 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.34□□□□□ -2.19
HOXC11O43248 AC008507.4-201ENST00000585464 127 ntBASIC1.34□□□□□ -2.19
HOXC11O43248 UBE2WP1-201ENST00000362030 340 ntBASIC1.33□□□□□ -2.2
HOXC11O43248 Y_RNA.217-201ENST00000364214 105 ntBASIC1.33□□□□□ -2.2
HOXC11O43248 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.33□□□□□ -2.2
HOXC11O43248 SNORD11-201ENST00000459124 84 ntBASIC1.33□□□□□ -2.2
HOXC11O43248 Y_RNA.641-201ENST00000459414 105 ntBASIC1.33□□□□□ -2.2
HOXC11O43248 MTATP8P1-201ENST00000467115 207 ntBASIC1.33□□□□□ -2.2
HOXC11O43248 RNU7-43P-201ENST00000516554 64 ntBASIC1.33□□□□□ -2.2
HOXC11O43248 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.33□□□□□ -2.2
HOXC11O43248 snoU18.1-201ENST00000629629 71 ntBASIC1.33□□□□□ -2.2
HOXC11O43248 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.33□□□□□ -2.2
HOXC11O43248 Y_RNA.145-201ENST00000363527 102 ntBASIC1.32□□□□□ -2.2
HOXC11O43248 MIR758-201ENST00000390227 88 ntBASIC1.32□□□□□ -2.2
HOXC11O43248 RNU6-383P-201ENST00000410864 94 ntBASIC1.32□□□□□ -2.2
HOXC11O43248 SNORD123-201ENST00000459473 70 ntBASIC1.32□□□□□ -2.2
HOXC11O43248 AL133373.1-201ENST00000497098 94 ntBASIC1.32□□□□□ -2.2
HOXC11O43248 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.32□□□□□ -2.2
HOXC11O43248 AC008737.2-201ENST00000599446 118 ntBASIC1.32□□□□□ -2.2
HOXC11O43248 AL096861.1-201ENST00000610899 123 ntBASIC1.32□□□□□ -2.2
HOXC11O43248 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.31□□□□□ -2.2
HOXC11O43248 Y_RNA.176-201ENST00000363815 109 ntBASIC1.31□□□□□ -2.2
HOXC11O43248 Y_RNA.376-201ENST00000365638 108 ntBASIC1.31□□□□□ -2.2
HOXC11O43248 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.31□□□□□ -2.2
HOXC11O43248 MIR4764-201ENST00000580680 88 ntBASIC1.31□□□□□ -2.2
HOXC11O43248 AC006006.1-201ENST00000603082 144 ntBASIC1.31□□□□□ -2.2
HOXC11O43248 Y_RNA.802-201ENST00000614892 130 ntBASIC1.31□□□□□ -2.2
HOXC11O43248 Pinc.1-201ENST00000616452 154 ntBASIC1.31□□□□□ -2.2
HOXC11O43248 Y_RNA.44-201ENST00000362676 108 ntBASIC1.3□□□□□ -2.2
HOXC11O43248 RNU6-1067P-201ENST00000384752 107 ntBASIC1.3□□□□□ -2.2
HOXC11O43248 SNORD72-201ENST00000390994 80 ntBASIC1.3□□□□□ -2.2
HOXC11O43248 RPS29P29-201ENST00000456396 171 ntBASIC1.3□□□□□ -2.2
HOXC11O43248 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.3□□□□□ -2.2
HOXC11O43248 RNU6-268P-201ENST00000364174 107 ntBASIC1.29□□□□□ -2.2
HOXC11O43248 Y_RNA.237-201ENST00000364439 102 ntBASIC1.29□□□□□ -2.2
HOXC11O43248 Y_RNA.275-201ENST00000364726 110 ntBASIC1.29□□□□□ -2.2
HOXC11O43248 RNU6-1289P-201ENST00000384431 106 ntBASIC1.29□□□□□ -2.2
HOXC11O43248 SNORA80D-201ENST00000384488 135 ntBASIC1.29□□□□□ -2.2
HOXC11O43248 Y_RNA.512-201ENST00000384518 102 ntBASIC1.29□□□□□ -2.2
HOXC11O43248 Y_RNA.574-201ENST00000384766 95 ntBASIC1.29□□□□□ -2.2
HOXC11O43248 AC245047.8-201ENST00000456455 284 ntBASIC1.29□□□□□ -2.2
HOXC11O43248 RNA5SP102-201ENST00000516865 106 ntBASIC1.29□□□□□ -2.2
HOXC11O43248 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.29□□□□□ -2.2
HOXC11O43248 AL008718.3-201ENST00000610217 321 ntBASIC1.29□□□□□ -2.2
HOXC11O43248 MIR6504-201ENST00000613520 61 ntBASIC1.29□□□□□ -2.2
HOXC11O43248 uc_338.4-201ENST00000616635 176 ntBASIC1.29□□□□□ -2.2
HOXC11O43248 MIR8062-201ENST00000621515 85 ntBASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms