Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 RNU6-537P-201ENST00000517277 103 ntBASIC3.29□□□□□ -1.88
CHMP3Q9Y3E7 AC087685.1-201ENST00000587507 141 ntBASIC3.29□□□□□ -1.88
CHMP3Q9Y3E7 MIR6817-201ENST00000615588 66 ntBASIC3.29□□□□□ -1.88
CHMP3Q9Y3E7 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
CHMP3Q9Y3E7 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CHMP3Q9Y3E7 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CHMP3Q9Y3E7 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CHMP3Q9Y3E7 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CHMP3Q9Y3E7 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CHMP3Q9Y3E7 RNU4-82P-201ENST00000362443 140 ntBASIC3.28□□□□□ -1.88
CHMP3Q9Y3E7 Y_RNA.85-201ENST00000363014 111 ntBASIC3.28□□□□□ -1.88
CHMP3Q9Y3E7 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
CHMP3Q9Y3E7 RNA5SP136-201ENST00000410906 107 ntBASIC3.28□□□□□ -1.88
CHMP3Q9Y3E7 AC099677.2-201ENST00000436385 175 ntBASIC3.28□□□□□ -1.88
CHMP3Q9Y3E7 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC3.28□□□□□ -1.88
CHMP3Q9Y3E7 RNU1-131P-201ENST00000458943 161 ntBASIC3.28□□□□□ -1.88
CHMP3Q9Y3E7 RPS29P24-201ENST00000486345 171 ntBASIC3.28□□□□□ -1.88
CHMP3Q9Y3E7 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CHMP3Q9Y3E7 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CHMP3Q9Y3E7 RNA5SP68-201ENST00000363885 119 ntBASIC3.27□□□□□ -1.89
CHMP3Q9Y3E7 SNORA26.7-201ENST00000391288 122 ntBASIC3.27□□□□□ -1.89
CHMP3Q9Y3E7 RNY4P30-201ENST00000410216 95 ntBASIC3.27□□□□□ -1.89
CHMP3Q9Y3E7 AC092427.1-202ENST00000430569 476 ntBASIC3.27□□□□□ -1.89
CHMP3Q9Y3E7 SNRPGP14-201ENST00000435400 219 ntBASIC3.27□□□□□ -1.89
CHMP3Q9Y3E7 COX6CP6-201ENST00000490840 228 ntBASIC3.27□□□□□ -1.89
CHMP3Q9Y3E7 RN7SL636P-201ENST00000497504 294 ntBASIC3.27□□□□□ -1.89
CHMP3Q9Y3E7 RNU6-412P-201ENST00000516434 106 ntBASIC3.27□□□□□ -1.89
CHMP3Q9Y3E7 Y_RNA.694-201ENST00000516677 117 ntBASIC3.27□□□□□ -1.89
CHMP3Q9Y3E7 Y_RNA.714-201ENST00000517065 90 ntBASIC3.27□□□□□ -1.89
CHMP3Q9Y3E7 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.27□□□□□ -1.89
CHMP3Q9Y3E7 AC009831.4-201ENST00000620744 325 ntBASIC3.27□□□□□ -1.89
CHMP3Q9Y3E7 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.27□□□□□ -1.89
CHMP3Q9Y3E7 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.27□□□□□ -1.89
CHMP3Q9Y3E7 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CHMP3Q9Y3E7 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.27□□□□□ -1.89
CHMP3Q9Y3E7 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CHMP3Q9Y3E7 RNA5SP493-201ENST00000364115 91 ntBASIC3.26□□□□□ -1.89
CHMP3Q9Y3E7 RNU6-268P-201ENST00000364174 107 ntBASIC3.26□□□□□ -1.89
CHMP3Q9Y3E7 SNORA2.2-201ENST00000365473 135 ntBASIC3.26□□□□□ -1.89
CHMP3Q9Y3E7 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.26□□□□□ -1.89
CHMP3Q9Y3E7 SNORD36C-201ENST00000516733 66 ntBASIC3.26□□□□□ -1.89
CHMP3Q9Y3E7 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
CHMP3Q9Y3E7 AC006441.5-201ENST00000612680 209 ntBASIC3.26□□□□□ -1.89
CHMP3Q9Y3E7 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CHMP3Q9Y3E7 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CHMP3Q9Y3E7 RNU6-1084P-201ENST00000362498 107 ntBASIC3.25□□□□□ -1.89
CHMP3Q9Y3E7 RNU6-442P-201ENST00000383968 104 ntBASIC3.25□□□□□ -1.89
CHMP3Q9Y3E7 Y_RNA.547-201ENST00000384654 119 ntBASIC3.25□□□□□ -1.89
CHMP3Q9Y3E7 SNORD88.1-201ENST00000408684 91 ntBASIC3.25□□□□□ -1.89
CHMP3Q9Y3E7 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC3.25□□□□□ -1.89
CHMP3Q9Y3E7 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.25□□□□□ -1.89
CHMP3Q9Y3E7 CST2P1-201ENST00000425770 87 ntBASIC3.25□□□□□ -1.89
CHMP3Q9Y3E7 RNY4P20-201ENST00000516678 93 ntBASIC3.25□□□□□ -1.89
CHMP3Q9Y3E7 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.25□□□□□ -1.89
CHMP3Q9Y3E7 MIR4762-201ENST00000585261 75 ntBASIC3.25□□□□□ -1.89
CHMP3Q9Y3E7 AC134878.1-201ENST00000619901 243 ntBASIC3.25□□□□□ -1.89
CHMP3Q9Y3E7 AC106754.2-201ENST00000623006 233 ntBASIC3.25□□□□□ -1.89
CHMP3Q9Y3E7 CTSLP2-204ENST00000629029 392 ntBASIC3.25□□□□□ -1.89
CHMP3Q9Y3E7 AGL-204ENST00000370161 6923 ntTSL 5 BASIC3.25□□□□□ -1.89
CHMP3Q9Y3E7 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.24□□□□□ -1.89
CHMP3Q9Y3E7 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CHMP3Q9Y3E7 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
CHMP3Q9Y3E7 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
CHMP3Q9Y3E7 Y_RNA.37-201ENST00000362606 108 ntBASIC3.24□□□□□ -1.89
CHMP3Q9Y3E7 SNORA63.5-201ENST00000363548 123 ntBASIC3.24□□□□□ -1.89
CHMP3Q9Y3E7 SNORD14E-201ENST00000364009 85 ntBASIC3.24□□□□□ -1.89
CHMP3Q9Y3E7 U8.5-201ENST00000364528 136 ntBASIC3.24□□□□□ -1.89
CHMP3Q9Y3E7 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
CHMP3Q9Y3E7 MT-TI-201ENST00000387365 69 ntBASIC3.24□□□□□ -1.89
CHMP3Q9Y3E7 AC009238.1-201ENST00000442165 424 ntBASIC3.24□□□□□ -1.89
CHMP3Q9Y3E7 AC009237.6-201ENST00000446969 424 ntBASIC3.24□□□□□ -1.89
CHMP3Q9Y3E7 RNU7-94P-201ENST00000459576 63 ntBASIC3.24□□□□□ -1.89
CHMP3Q9Y3E7 RPS26P48-201ENST00000491713 339 ntBASIC3.24□□□□□ -1.89
CHMP3Q9Y3E7 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC3.24□□□□□ -1.89
CHMP3Q9Y3E7 SNORA72.7-201ENST00000516349 94 ntBASIC3.24□□□□□ -1.89
CHMP3Q9Y3E7 SNORD45.4-201ENST00000516629 73 ntBASIC3.24□□□□□ -1.89
CHMP3Q9Y3E7 AC024995.1-201ENST00000523014 93 ntBASIC3.24□□□□□ -1.89
CHMP3Q9Y3E7 AC004486.1-201ENST00000546846 233 ntBASIC3.24□□□□□ -1.89
CHMP3Q9Y3E7 MIR3169-201ENST00000578032 83 ntBASIC3.24□□□□□ -1.89
CHMP3Q9Y3E7 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.24□□□□□ -1.89
CHMP3Q9Y3E7 AC002984.1-201ENST00000591692 448 ntBASIC3.24□□□□□ -1.89
CHMP3Q9Y3E7 AC022513.1-201ENST00000624512 117 ntBASIC3.24□□□□□ -1.89
CHMP3Q9Y3E7 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CHMP3Q9Y3E7 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CHMP3Q9Y3E7 SNORD115-3-201ENST00000363100 82 ntBASIC3.23□□□□□ -1.89
CHMP3Q9Y3E7 Y_RNA.163-201ENST00000363702 113 ntBASIC3.23□□□□□ -1.89
CHMP3Q9Y3E7 SNORD115-28-201ENST00000363931 81 ntBASIC3.23□□□□□ -1.89
CHMP3Q9Y3E7 Y_RNA.242-201ENST00000364473 110 ntBASIC3.23□□□□□ -1.89
CHMP3Q9Y3E7 RNU6-690P-201ENST00000365242 106 ntBASIC3.23□□□□□ -1.89
CHMP3Q9Y3E7 RNU6-1189P-201ENST00000383958 107 ntBASIC3.23□□□□□ -1.89
CHMP3Q9Y3E7 RNU6-905P-201ENST00000384434 107 ntBASIC3.23□□□□□ -1.89
CHMP3Q9Y3E7 RNA5SP109-201ENST00000391010 116 ntBASIC3.23□□□□□ -1.89
CHMP3Q9Y3E7 RNA5SP210-201ENST00000391034 120 ntBASIC3.23□□□□□ -1.89
CHMP3Q9Y3E7 RNU6-938P-201ENST00000411285 103 ntBASIC3.23□□□□□ -1.89
CHMP3Q9Y3E7 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.23□□□□□ -1.89
CHMP3Q9Y3E7 HMGN2P32-201ENST00000444648 269 ntBASIC3.23□□□□□ -1.89
CHMP3Q9Y3E7 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC3.23□□□□□ -1.89
CHMP3Q9Y3E7 RPPH1-2P-201ENST00000516688 293 ntBASIC3.23□□□□□ -1.89
CHMP3Q9Y3E7 AC022202.1-201ENST00000613515 211 ntBASIC3.23□□□□□ -1.89
CHMP3Q9Y3E7 Clostridiales-1.3-201ENST00000637703 147 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms