Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RPS26P48-201ENST00000491713 339 ntBASIC0.94□□□□□ -2.26
DDX28Q9NUL7 SEPT14P8-201ENST00000508026 178 ntBASIC0.94□□□□□ -2.26
DDX28Q9NUL7 RNU7-115P-201ENST00000516433 55 ntBASIC0.94□□□□□ -2.26
DDX28Q9NUL7 AC024405.2-202ENST00000532731 184 ntBASIC0.94□□□□□ -2.26
DDX28Q9NUL7 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.94□□□□□ -2.26
DDX28Q9NUL7 MIR151B-201ENST00000584249 96 ntBASIC0.94□□□□□ -2.26
DDX28Q9NUL7 AC007485.1-201ENST00000616755 206 ntBASIC0.94□□□□□ -2.26
DDX28Q9NUL7 Y_RNA.203-201ENST00000364106 102 ntBASIC0.93□□□□□ -2.26
DDX28Q9NUL7 U8.7-201ENST00000364940 136 ntBASIC0.93□□□□□ -2.26
DDX28Q9NUL7 Y_RNA.424-201ENST00000384063 103 ntBASIC0.93□□□□□ -2.26
DDX28Q9NUL7 RNU6-1248P-201ENST00000391096 64 ntBASIC0.93□□□□□ -2.26
DDX28Q9NUL7 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.93□□□□□ -2.26
DDX28Q9NUL7 MTATP6P23-201ENST00000440153 476 ntBASIC0.93□□□□□ -2.26
DDX28Q9NUL7 RNU7-21P-201ENST00000459430 62 ntBASIC0.93□□□□□ -2.26
DDX28Q9NUL7 AC117454.1-201ENST00000491120 168 ntBASIC0.93□□□□□ -2.26
DDX28Q9NUL7 AC127455.1-201ENST00000565496 145 ntBASIC0.93□□□□□ -2.26
DDX28Q9NUL7 SNORD113-5-201ENST00000607261 78 ntBASIC0.93□□□□□ -2.26
DDX28Q9NUL7 MIR6788-201ENST00000618842 66 ntBASIC0.93□□□□□ -2.26
DDX28Q9NUL7 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.93□□□□□ -2.26
DDX28Q9NUL7 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.93□□□□□ -2.26
DDX28Q9NUL7 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.92□□□□□ -2.26
DDX28Q9NUL7 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.92□□□□□ -2.26
DDX28Q9NUL7 Y_RNA.383-201ENST00000383855 97 ntBASIC0.92□□□□□ -2.26
DDX28Q9NUL7 MIR7-2-201ENST00000384970 110 ntBASIC0.92□□□□□ -2.26
DDX28Q9NUL7 MIR520C-201ENST00000385005 87 ntBASIC0.92□□□□□ -2.26
DDX28Q9NUL7 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.92□□□□□ -2.26
DDX28Q9NUL7 snoU13.25-201ENST00000458945 104 ntBASIC0.92□□□□□ -2.26
DDX28Q9NUL7 RPL23AP54-201ENST00000495129 419 ntBASIC0.92□□□□□ -2.26
DDX28Q9NUL7 RNU6-113P-201ENST00000516653 101 ntBASIC0.92□□□□□ -2.26
DDX28Q9NUL7 MIR3145-201ENST00000580727 82 ntBASIC0.92□□□□□ -2.26
DDX28Q9NUL7 AC087685.1-201ENST00000587507 141 ntBASIC0.92□□□□□ -2.26
DDX28Q9NUL7 SNORD114-21-201ENST00000606412 72 ntBASIC0.92□□□□□ -2.26
DDX28Q9NUL7 AL020996.3-201ENST00000606617 222 ntBASIC0.92□□□□□ -2.26
DDX28Q9NUL7 PART1_1.1-201ENST00000611761 217 ntBASIC0.92□□□□□ -2.26
DDX28Q9NUL7 AC022709.1-201ENST00000615967 87 ntBASIC0.92□□□□□ -2.26
DDX28Q9NUL7 MIR548AY-201ENST00000617669 107 ntBASIC0.92□□□□□ -2.26
DDX28Q9NUL7 AC090971.5-201ENST00000621102 293 ntBASIC0.92□□□□□ -2.26
DDX28Q9NUL7 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.91□□□□□ -2.26
DDX28Q9NUL7 AC008163.1-202ENST00000636004 2889 ntBASIC0.91□□□□□ -2.26
DDX28Q9NUL7 SNORD114-24-201ENST00000365029 72 ntBASIC0.91□□□□□ -2.26
DDX28Q9NUL7 SNORD42.2-201ENST00000365570 69 ntBASIC0.91□□□□□ -2.26
DDX28Q9NUL7 SNORA63.7-201ENST00000365579 123 ntBASIC0.91□□□□□ -2.26
DDX28Q9NUL7 RNU6-969P-201ENST00000383900 105 ntBASIC0.91□□□□□ -2.26
DDX28Q9NUL7 MIR200A-201ENST00000384875 90 ntBASIC0.91□□□□□ -2.26
DDX28Q9NUL7 RNU6-130P-201ENST00000411112 103 ntBASIC0.91□□□□□ -2.26
DDX28Q9NUL7 POLR2KP2-201ENST00000438155 177 ntBASIC0.91□□□□□ -2.26
DDX28Q9NUL7 MTND4P19-201ENST00000446659 478 ntBASIC0.91□□□□□ -2.26
DDX28Q9NUL7 Y_RNA.639-201ENST00000458981 102 ntBASIC0.91□□□□□ -2.26
DDX28Q9NUL7 RNU7-90P-201ENST00000459216 62 ntBASIC0.91□□□□□ -2.26
DDX28Q9NUL7 RNU7-43P-201ENST00000516554 64 ntBASIC0.91□□□□□ -2.26
DDX28Q9NUL7 RNA5SP480-201ENST00000516840 109 ntBASIC0.91□□□□□ -2.26
DDX28Q9NUL7 AC136628.3-201ENST00000521868 290 ntBASIC0.91□□□□□ -2.26
DDX28Q9NUL7 MIR2681-201ENST00000581814 105 ntBASIC0.91□□□□□ -2.26
DDX28Q9NUL7 MIR4661-201ENST00000582720 75 ntBASIC0.91□□□□□ -2.26
DDX28Q9NUL7 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.91□□□□□ -2.26
DDX28Q9NUL7 JPX_2.1-201ENST00000614161 69 ntBASIC0.91□□□□□ -2.26
DDX28Q9NUL7 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.9□□□□□ -2.26
DDX28Q9NUL7 RNA5SP264-201ENST00000363115 107 ntBASIC0.9□□□□□ -2.27
DDX28Q9NUL7 SNORD14E-201ENST00000364009 85 ntBASIC0.9□□□□□ -2.27
DDX28Q9NUL7 SNORA75.2-201ENST00000391138 150 ntBASIC0.9□□□□□ -2.27
DDX28Q9NUL7 SNORA75.3-201ENST00000391231 150 ntBASIC0.9□□□□□ -2.27
DDX28Q9NUL7 AC010655.3-201ENST00000478818 450 ntBASIC0.9□□□□□ -2.27
DDX28Q9NUL7 SNORA18.7-201ENST00000516910 131 ntBASIC0.9□□□□□ -2.27
DDX28Q9NUL7 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.9□□□□□ -2.27
DDX28Q9NUL7 AC136932.1-201ENST00000574771 208 ntBASIC0.9□□□□□ -2.27
DDX28Q9NUL7 MIR4764-201ENST00000580680 88 ntBASIC0.9□□□□□ -2.27
DDX28Q9NUL7 MIR369-201ENST00000362155 70 ntBASIC0.89□□□□□ -2.27
DDX28Q9NUL7 POLR2J4-204ENST00000418424 324 ntBASIC0.89□□□□□ -2.27
DDX28Q9NUL7 MTND4LP11-201ENST00000422184 280 ntBASIC0.89□□□□□ -2.27
DDX28Q9NUL7 SNORD123-201ENST00000459473 70 ntBASIC0.89□□□□□ -2.27
DDX28Q9NUL7 SNORD124-201ENST00000459577 104 ntBASIC0.89□□□□□ -2.27
DDX28Q9NUL7 AP003716.2-201ENST00000528260 108 ntBASIC0.89□□□□□ -2.27
DDX28Q9NUL7 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.88□□□□□ -2.27
DDX28Q9NUL7 RNU6-1209P-201ENST00000363655 107 ntBASIC0.88□□□□□ -2.27
DDX28Q9NUL7 RNU6-674P-201ENST00000363831 107 ntBASIC0.88□□□□□ -2.27
DDX28Q9NUL7 Y_RNA.222-201ENST00000364264 102 ntBASIC0.88□□□□□ -2.27
DDX28Q9NUL7 RNU4-38P-201ENST00000364472 129 ntBASIC0.88□□□□□ -2.27
DDX28Q9NUL7 Y_RNA.286-201ENST00000364813 102 ntBASIC0.88□□□□□ -2.27
DDX28Q9NUL7 RNU1-36P-201ENST00000365130 165 ntBASIC0.88□□□□□ -2.27
DDX28Q9NUL7 Y_RNA.419-201ENST00000384041 102 ntBASIC0.88□□□□□ -2.27
DDX28Q9NUL7 SNORD38C-201ENST00000384381 69 ntBASIC0.88□□□□□ -2.27
DDX28Q9NUL7 MIR598-201ENST00000384868 97 ntBASIC0.88□□□□□ -2.27
DDX28Q9NUL7 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.88□□□□□ -2.27
DDX28Q9NUL7 MIR548J-201ENST00000408833 112 ntBASIC0.88□□□□□ -2.27
DDX28Q9NUL7 RNU7-41P-201ENST00000515917 61 ntBASIC0.88□□□□□ -2.27
DDX28Q9NUL7 AC013244.2-201ENST00000603396 103 ntBASIC0.88□□□□□ -2.27
DDX28Q9NUL7 AC124312.5-201ENST00000604451 268 ntBASIC0.88□□□□□ -2.27
DDX28Q9NUL7 AC090574.1-201ENST00000623186 233 ntBASIC0.88□□□□□ -2.27
DDX28Q9NUL7 AL442644.1-201ENST00000454390 3105 ntBASIC0.88□□□□□ -2.27
DDX28Q9NUL7 RNU4-80P-201ENST00000363200 141 ntBASIC0.87□□□□□ -2.27
DDX28Q9NUL7 RNU6-801P-201ENST00000364087 105 ntBASIC0.87□□□□□ -2.27
DDX28Q9NUL7 RNU6-442P-201ENST00000383968 104 ntBASIC0.87□□□□□ -2.27
DDX28Q9NUL7 SNORA72.4-201ENST00000384174 132 ntBASIC0.87□□□□□ -2.27
DDX28Q9NUL7 SNORA36B-201ENST00000410438 131 ntBASIC0.87□□□□□ -2.27
DDX28Q9NUL7 RNU7-141P-201ENST00000459304 62 ntBASIC0.87□□□□□ -2.27
DDX28Q9NUL7 RNU6-437P-201ENST00000459408 95 ntBASIC0.87□□□□□ -2.27
DDX28Q9NUL7 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.87□□□□□ -2.27
DDX28Q9NUL7 RNU6-1046P-201ENST00000516538 107 ntBASIC0.87□□□□□ -2.27
DDX28Q9NUL7 RNU6-1007P-201ENST00000516586 107 ntBASIC0.87□□□□□ -2.27
DDX28Q9NUL7 MIR103A2-201ENST00000362154 78 ntBASIC0.86□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 479 ms