Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 MIR4804-201ENST00000581683 73 ntBASIC0.1□□□□□ -2.39
USP42Q9H9J4 LARP7P1-201ENST00000605576 316 ntBASIC0.1□□□□□ -2.39
USP42Q9H9J4 AC020891.4-201ENST00000605745 93 ntBASIC0.1□□□□□ -2.39
USP42Q9H9J4 MTND1P7-201ENST00000632801 297 ntBASIC0.1□□□□□ -2.39
USP42Q9H9J4 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC0.1□□□□□ -2.39
USP42Q9H9J4 MIR377-201ENST00000362145 69 ntBASIC0.09□□□□□ -2.4
USP42Q9H9J4 Y_RNA.402-201ENST00000383972 102 ntBASIC0.09□□□□□ -2.4
USP42Q9H9J4 RNU6-926P-201ENST00000384075 107 ntBASIC0.09□□□□□ -2.4
USP42Q9H9J4 RNU6-125P-201ENST00000384505 107 ntBASIC0.09□□□□□ -2.4
USP42Q9H9J4 MIR518A1-201ENST00000385068 85 ntBASIC0.09□□□□□ -2.4
USP42Q9H9J4 MT-TN-201ENST00000387400 73 ntBASIC0.09□□□□□ -2.4
USP42Q9H9J4 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.09□□□□□ -2.4
USP42Q9H9J4 MIR1912-201ENST00000410389 80 ntBASIC0.09□□□□□ -2.4
USP42Q9H9J4 CHEK2P4-201ENST00000450340 246 ntBASIC0.09□□□□□ -2.4
USP42Q9H9J4 AC098826.2-201ENST00000452011 651 ntBASIC0.09□□□□□ -2.4
USP42Q9H9J4 RNU7-56P-201ENST00000458744 62 ntBASIC0.09□□□□□ -2.4
USP42Q9H9J4 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC0.09□□□□□ -2.4
USP42Q9H9J4 RNU6-830P-201ENST00000516353 107 ntBASIC0.09□□□□□ -2.4
USP42Q9H9J4 RNU6-977P-201ENST00000516411 103 ntBASIC0.09□□□□□ -2.4
USP42Q9H9J4 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.09□□□□□ -2.4
USP42Q9H9J4 MIR4771-2-201ENST00000577758 74 ntBASIC0.09□□□□□ -2.4
USP42Q9H9J4 MIR4771-1-201ENST00000582617 74 ntBASIC0.09□□□□□ -2.4
USP42Q9H9J4 AC103591.3-201ENST00000608684 209 ntBASIC0.09□□□□□ -2.4
USP42Q9H9J4 AC078938.1-201ENST00000620993 318 ntBASIC0.09□□□□□ -2.4
USP42Q9H9J4 Y_RNA.89-201ENST00000363031 102 ntBASIC0.08□□□□□ -2.4
USP42Q9H9J4 RNY4P14-201ENST00000363656 96 ntBASIC0.08□□□□□ -2.4
USP42Q9H9J4 RNU4-75P-201ENST00000364621 146 ntBASIC0.08□□□□□ -2.4
USP42Q9H9J4 RNU6-767P-201ENST00000384132 107 ntBASIC0.08□□□□□ -2.4
USP42Q9H9J4 U8.17-201ENST00000391292 132 ntBASIC0.08□□□□□ -2.4
USP42Q9H9J4 MIR548K-201ENST00000408406 116 ntBASIC0.08□□□□□ -2.4
USP42Q9H9J4 AC090844.1-201ENST00000422019 156 ntBASIC0.08□□□□□ -2.4
USP42Q9H9J4 BTF3P11-201ENST00000426582 477 ntBASIC0.08□□□□□ -2.4
USP42Q9H9J4 MTND3P21-201ENST00000433774 331 ntBASIC0.08□□□□□ -2.4
USP42Q9H9J4 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.08□□□□□ -2.4
USP42Q9H9J4 RNU7-181P-201ENST00000517234 74 ntBASIC0.08□□□□□ -2.4
USP42Q9H9J4 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.08□□□□□ -2.4
USP42Q9H9J4 MIR4676-201ENST00000583078 72 ntBASIC0.08□□□□□ -2.4
USP42Q9H9J4 AC006380.1-201ENST00000603598 186 ntBASIC0.08□□□□□ -2.4
USP42Q9H9J4 uc_338.6-201ENST00000613544 171 ntBASIC0.08□□□□□ -2.4
USP42Q9H9J4 AC092794.2-201ENST00000620933 563 ntBASIC0.08□□□□□ -2.4
USP42Q9H9J4 MIR371B-201ENST00000638082 66 ntBASIC0.08□□□□□ -2.4
USP42Q9H9J4 Y_RNA.157-201ENST00000363638 102 ntBASIC0.07□□□□□ -2.4
USP42Q9H9J4 SNORD14E-201ENST00000364009 85 ntBASIC0.07□□□□□ -2.4
USP42Q9H9J4 RNU6-268P-201ENST00000364174 107 ntBASIC0.07□□□□□ -2.4
USP42Q9H9J4 Y_RNA.370-201ENST00000365589 108 ntBASIC0.07□□□□□ -2.4
USP42Q9H9J4 Y_RNA.376-201ENST00000365638 108 ntBASIC0.07□□□□□ -2.4
USP42Q9H9J4 SNORA51.10-201ENST00000384418 136 ntBASIC0.07□□□□□ -2.4
USP42Q9H9J4 RNU6-601P-201ENST00000384540 107 ntBASIC0.07□□□□□ -2.4
USP42Q9H9J4 Y_RNA.559-201ENST00000384686 107 ntBASIC0.07□□□□□ -2.4
USP42Q9H9J4 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.07□□□□□ -2.4
USP42Q9H9J4 AC009161.1-201ENST00000417306 376 ntBASIC0.07□□□□□ -2.4
USP42Q9H9J4 AL139396.1-201ENST00000421137 167 ntBASIC0.07□□□□□ -2.4
USP42Q9H9J4 MTND2P22-201ENST00000444325 1033 ntBASIC0.07□□□□□ -2.4
USP42Q9H9J4 MTND3P10-201ENST00000450967 341 ntBASIC0.07□□□□□ -2.4
USP42Q9H9J4 RNU2-13P-201ENST00000515909 113 ntBASIC0.07□□□□□ -2.4
USP42Q9H9J4 RNU6-863P-201ENST00000515989 104 ntBASIC0.07□□□□□ -2.4
USP42Q9H9J4 AC022523.2-201ENST00000561045 150 ntBASIC0.07□□□□□ -2.4
USP42Q9H9J4 MIR4636-201ENST00000582271 80 ntBASIC0.07□□□□□ -2.4
USP42Q9H9J4 MIR4305-201ENST00000583252 102 ntBASIC0.07□□□□□ -2.4
USP42Q9H9J4 AC015540.1-201ENST00000615828 501 ntBASIC0.07□□□□□ -2.4
USP42Q9H9J4 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC0.07□□□□□ -2.4
USP42Q9H9J4 Pinc.1-201ENST00000616452 154 ntBASIC0.07□□□□□ -2.4
USP42Q9H9J4 AC087588.2-201ENST00000617667 426 ntBASIC0.07□□□□□ -2.4
USP42Q9H9J4 Y_RNA.146-201ENST00000363549 102 ntBASIC0.06□□□□□ -2.4
USP42Q9H9J4 RNU6-324P-201ENST00000363957 106 ntBASIC0.06□□□□□ -2.4
USP42Q9H9J4 Y_RNA.339-201ENST00000365325 102 ntBASIC0.06□□□□□ -2.4
USP42Q9H9J4 RNU6-815P-201ENST00000384080 113 ntBASIC0.06□□□□□ -2.4
USP42Q9H9J4 Y_RNA.446-201ENST00000384178 104 ntBASIC0.06□□□□□ -2.4
USP42Q9H9J4 SNORD38C-201ENST00000384381 69 ntBASIC0.06□□□□□ -2.4
USP42Q9H9J4 Y_RNA.537-201ENST00000384626 109 ntBASIC0.06□□□□□ -2.4
USP42Q9H9J4 MIR548F5-201ENST00000408421 86 ntBASIC0.06□□□□□ -2.4
USP42Q9H9J4 MTATP6P17-201ENST00000431030 672 ntBASIC0.06□□□□□ -2.4
USP42Q9H9J4 RPS3AP52-201ENST00000435639 297 ntBASIC0.06□□□□□ -2.4
USP42Q9H9J4 RNU6-120P-201ENST00000516077 103 ntBASIC0.06□□□□□ -2.4
USP42Q9H9J4 RNU6-155P-201ENST00000516347 100 ntBASIC0.06□□□□□ -2.4
USP42Q9H9J4 Y_RNA.708-201ENST00000516950 96 ntBASIC0.06□□□□□ -2.4
USP42Q9H9J4 MIR4667-201ENST00000578933 66 ntBASIC0.06□□□□□ -2.4
USP42Q9H9J4 MIR4791-201ENST00000607666 84 ntBASIC0.06□□□□□ -2.4
USP42Q9H9J4 Y_RNA.203-201ENST00000364106 102 ntBASIC0.05□□□□□ -2.4
USP42Q9H9J4 RNU6-99P-201ENST00000364721 107 ntBASIC0.05□□□□□ -2.4
USP42Q9H9J4 RNU6-1323P-201ENST00000384025 107 ntBASIC0.05□□□□□ -2.4
USP42Q9H9J4 RNU6-20P-201ENST00000384106 107 ntBASIC0.05□□□□□ -2.4
USP42Q9H9J4 Y_RNA.471-201ENST00000384312 102 ntBASIC0.05□□□□□ -2.4
USP42Q9H9J4 Y_RNA.517-201ENST00000384551 106 ntBASIC0.05□□□□□ -2.4
USP42Q9H9J4 RNU6-192P-201ENST00000391253 100 ntBASIC0.05□□□□□ -2.4
USP42Q9H9J4 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC0.05□□□□□ -2.4
USP42Q9H9J4 MTCO2P33-201ENST00000402100 465 ntBASIC0.05□□□□□ -2.4
USP42Q9H9J4 SNORA40.8-201ENST00000411034 126 ntBASIC0.05□□□□□ -2.4
USP42Q9H9J4 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.05□□□□□ -2.4
USP42Q9H9J4 MTND4P28-201ENST00000426217 387 ntBASIC0.05□□□□□ -2.4
USP42Q9H9J4 RPL17P19-201ENST00000489069 552 ntBASIC0.05□□□□□ -2.4
USP42Q9H9J4 RNA5SP94-201ENST00000516917 108 ntBASIC0.05□□□□□ -2.4
USP42Q9H9J4 AC245505.1-201ENST00000556398 224 ntBASIC0.05□□□□□ -2.4
USP42Q9H9J4 AC008608.1-201ENST00000603910 127 ntBASIC0.05□□□□□ -2.4
USP42Q9H9J4 SNORA25.18-201ENST00000607153 114 ntBASIC0.05□□□□□ -2.4
USP42Q9H9J4 Y_RNA.72-201ENST00000362894 103 ntBASIC0.04□□□□□ -2.4
USP42Q9H9J4 RNU6-626P-201ENST00000363354 107 ntBASIC0.04□□□□□ -2.4
USP42Q9H9J4 RNU6-593P-201ENST00000364716 112 ntBASIC0.04□□□□□ -2.4
USP42Q9H9J4 Y_RNA.329-201ENST00000365209 107 ntBASIC0.04□□□□□ -2.4
USP42Q9H9J4 Y_RNA.450-201ENST00000384198 113 ntBASIC0.04□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms