Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 MIR377-201ENST00000362145 69 ntBASIC0.23□□□□□ -2.37
LMX1AQ8TE12 MIR1-1-201ENST00000362147 71 ntBASIC0.23□□□□□ -2.37
LMX1AQ8TE12 RNU6-623P-201ENST00000363143 105 ntBASIC0.23□□□□□ -2.37
LMX1AQ8TE12 RNU6-626P-201ENST00000363354 107 ntBASIC0.23□□□□□ -2.37
LMX1AQ8TE12 Y_RNA.310-201ENST00000365063 113 ntBASIC0.23□□□□□ -2.37
LMX1AQ8TE12 SNORA36.2-201ENST00000384004 127 ntBASIC0.23□□□□□ -2.37
LMX1AQ8TE12 Y_RNA.436-201ENST00000384097 102 ntBASIC0.23□□□□□ -2.37
LMX1AQ8TE12 RNU6-20P-201ENST00000384106 107 ntBASIC0.23□□□□□ -2.37
LMX1AQ8TE12 SNORA69.1-201ENST00000390904 137 ntBASIC0.23□□□□□ -2.37
LMX1AQ8TE12 SNORD115-47-201ENST00000391226 86 ntBASIC0.23□□□□□ -2.37
LMX1AQ8TE12 RNU6-994P-201ENST00000410507 111 ntBASIC0.23□□□□□ -2.37
LMX1AQ8TE12 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.23□□□□□ -2.37
LMX1AQ8TE12 FCF1P4-201ENST00000448326 183 ntBASIC0.23□□□□□ -2.37
LMX1AQ8TE12 snoU13.21-201ENST00000459368 105 ntBASIC0.23□□□□□ -2.37
LMX1AQ8TE12 Y_RNA.714-201ENST00000517065 90 ntBASIC0.23□□□□□ -2.37
LMX1AQ8TE12 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.23□□□□□ -2.37
LMX1AQ8TE12 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.23□□□□□ -2.37
LMX1AQ8TE12 AL355073.2-201ENST00000612106 557 ntBASIC0.23□□□□□ -2.37
LMX1AQ8TE12 Y_RNA.68-201ENST00000362881 102 ntBASIC0.22□□□□□ -2.37
LMX1AQ8TE12 Y_RNA.86-201ENST00000363020 111 ntBASIC0.22□□□□□ -2.37
LMX1AQ8TE12 Y_RNA.148-201ENST00000363557 117 ntBASIC0.22□□□□□ -2.37
LMX1AQ8TE12 Y_RNA.230-201ENST00000364348 109 ntBASIC0.22□□□□□ -2.37
LMX1AQ8TE12 SNORA2B-201ENST00000384583 137 ntBASIC0.22□□□□□ -2.37
LMX1AQ8TE12 Y_RNA.537-201ENST00000384626 109 ntBASIC0.22□□□□□ -2.37
LMX1AQ8TE12 MIR573-201ENST00000384964 99 ntBASIC0.22□□□□□ -2.37
LMX1AQ8TE12 MIR140-201ENST00000385282 100 ntBASIC0.22□□□□□ -2.37
LMX1AQ8TE12 RNU6-192P-201ENST00000391253 100 ntBASIC0.22□□□□□ -2.37
LMX1AQ8TE12 RNU6-1156P-201ENST00000410365 100 ntBASIC0.22□□□□□ -2.37
LMX1AQ8TE12 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC0.22□□□□□ -2.37
LMX1AQ8TE12 RNU2-13P-201ENST00000515909 113 ntBASIC0.22□□□□□ -2.37
LMX1AQ8TE12 AC087685.1-201ENST00000587507 141 ntBASIC0.22□□□□□ -2.37
LMX1AQ8TE12 AC005176.2-201ENST00000596933 147 ntBASIC0.22□□□□□ -2.37
LMX1AQ8TE12 PISRT1.1-201ENST00000616930 107 ntBASIC0.22□□□□□ -2.37
LMX1AQ8TE12 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.21□□□□□ -2.38
LMX1AQ8TE12 MIRLET7D-201ENST00000362263 87 ntBASIC0.21□□□□□ -2.38
LMX1AQ8TE12 Y_RNA.72-201ENST00000362894 103 ntBASIC0.21□□□□□ -2.38
LMX1AQ8TE12 RNA5SP62-201ENST00000363457 110 ntBASIC0.21□□□□□ -2.38
LMX1AQ8TE12 SNORD45.3-201ENST00000363836 72 ntBASIC0.21□□□□□ -2.38
LMX1AQ8TE12 RNU6-396P-201ENST00000365369 105 ntBASIC0.21□□□□□ -2.38
LMX1AQ8TE12 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC0.21□□□□□ -2.38
LMX1AQ8TE12 MIR1277-201ENST00000408536 78 ntBASIC0.21□□□□□ -2.38
LMX1AQ8TE12 AC016907.1-201ENST00000419483 435 ntBASIC0.21□□□□□ -2.38
LMX1AQ8TE12 AC015818.7-201ENST00000428754 109 ntBASIC0.21□□□□□ -2.38
LMX1AQ8TE12 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.21□□□□□ -2.38
LMX1AQ8TE12 AC087499.7-201ENST00000441958 109 ntBASIC0.21□□□□□ -2.38
LMX1AQ8TE12 HMGN1P10-201ENST00000474557 553 ntBASIC0.21□□□□□ -2.38
LMX1AQ8TE12 AC108740.1-201ENST00000498629 225 ntBASIC0.21□□□□□ -2.38
LMX1AQ8TE12 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.21□□□□□ -2.38
LMX1AQ8TE12 RNU7-116P-201ENST00000516940 62 ntBASIC0.21□□□□□ -2.38
LMX1AQ8TE12 AP003327.1-201ENST00000529684 127 ntBASIC0.21□□□□□ -2.38
LMX1AQ8TE12 AC093027.1-201ENST00000546698 429 ntBASIC0.21□□□□□ -2.38
LMX1AQ8TE12 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC0.21□□□□□ -2.38
LMX1AQ8TE12 Pinc.1-201ENST00000616452 154 ntBASIC0.21□□□□□ -2.38
LMX1AQ8TE12 RNU6-268P-201ENST00000364174 107 ntBASIC0.2□□□□□ -2.38
LMX1AQ8TE12 Y_RNA.280-201ENST00000364765 112 ntBASIC0.2□□□□□ -2.38
LMX1AQ8TE12 SNORD38C-201ENST00000384381 69 ntBASIC0.2□□□□□ -2.38
LMX1AQ8TE12 U8.17-201ENST00000391292 132 ntBASIC0.2□□□□□ -2.38
LMX1AQ8TE12 RNU6-710P-201ENST00000410424 105 ntBASIC0.2□□□□□ -2.38
LMX1AQ8TE12 MCFD2P1-201ENST00000417812 300 ntBASIC0.2□□□□□ -2.38
LMX1AQ8TE12 HMGN1P33-201ENST00000432945 451 ntBASIC0.2□□□□□ -2.38
LMX1AQ8TE12 RPL30P15-201ENST00000457129 321 ntBASIC0.2□□□□□ -2.38
LMX1AQ8TE12 NDUFA4P2-201ENST00000489989 244 ntBASIC0.2□□□□□ -2.38
LMX1AQ8TE12 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.2□□□□□ -2.38
LMX1AQ8TE12 RNU6-155P-201ENST00000516347 100 ntBASIC0.2□□□□□ -2.38
LMX1AQ8TE12 MIR548AO-201ENST00000579992 96 ntBASIC0.2□□□□□ -2.38
LMX1AQ8TE12 AP003357.1-201ENST00000604497 148 ntBASIC0.2□□□□□ -2.38
LMX1AQ8TE12 AC138305.3-201ENST00000624988 240 ntBASIC0.2□□□□□ -2.38
LMX1AQ8TE12 MIR18A-201ENST00000362310 71 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 SNORD14E-201ENST00000364009 85 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 Y_RNA.203-201ENST00000364106 102 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 Y_RNA.329-201ENST00000365209 107 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 RNU6-1327P-201ENST00000365302 105 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 RNU4-45P-201ENST00000365469 141 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 Y_RNA.376-201ENST00000365638 108 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 RNU6-442P-201ENST00000383968 104 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 RNU6-926P-201ENST00000384075 107 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 Y_RNA.456-201ENST00000384232 111 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 Y_RNA.476-201ENST00000384347 108 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 SNORD78.2-201ENST00000391076 69 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 SNORA75.6-201ENST00000391318 127 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 MIR548F1-201ENST00000408667 84 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 RNU4-14P-201ENST00000410858 122 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 AF228730.4-201ENST00000421457 183 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 MTCO3P10-201ENST00000455912 772 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC0.19□□□□□ -2.38
LMX1AQ8TE12 AC091951.2-201ENST00000500762 203 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 RNU6-120P-201ENST00000516077 103 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 RNU6-911P-201ENST00000516523 104 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 RNU6-358P-201ENST00000516564 75 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 Y_RNA.691-201ENST00000516611 103 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 MIR4423-201ENST00000580922 80 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 MIR4300-201ENST00000581016 96 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 AC006441.5-201ENST00000612680 209 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 MIR2909-201ENST00000617113 69 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 AC015726.2-201ENST00000620112 122 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 MTND1P7-201ENST00000632801 297 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 AL669831.3-213ENST00000636676 183 ntBASIC0.19□□□□□ -2.38
LMX1AQ8TE12 MIR103A1-201ENST00000362165 78 ntBASIC0.18□□□□□ -2.38
LMX1AQ8TE12 RNU6-324P-201ENST00000363957 106 ntBASIC0.18□□□□□ -2.38
LMX1AQ8TE12 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.18□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 144.1 ms