Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 SNORA18.7-201ENST00000516910 131 ntBASIC0.82□□□□□ -2.28
SKA3Q8IX90 Y_RNA.715-201ENST00000517082 110 ntBASIC0.82□□□□□ -2.28
SKA3Q8IX90 SNORA74.3-201ENST00000517108 154 ntBASIC0.82□□□□□ -2.28
SKA3Q8IX90 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.82□□□□□ -2.28
SKA3Q8IX90 AC008163.1-202ENST00000636004 2889 ntBASIC0.82□□□□□ -2.28
SKA3Q8IX90 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.81□□□□□ -2.28
SKA3Q8IX90 SNORD113-8-201ENST00000363497 74 ntBASIC0.81□□□□□ -2.28
SKA3Q8IX90 SNORA63.7-201ENST00000365579 123 ntBASIC0.81□□□□□ -2.28
SKA3Q8IX90 RNU6-969P-201ENST00000383900 105 ntBASIC0.81□□□□□ -2.28
SKA3Q8IX90 Y_RNA.394-201ENST00000383942 103 ntBASIC0.81□□□□□ -2.28
SKA3Q8IX90 SNORA72.4-201ENST00000384174 132 ntBASIC0.81□□□□□ -2.28
SKA3Q8IX90 MIR19B1-201ENST00000384829 87 ntBASIC0.81□□□□□ -2.28
SKA3Q8IX90 Y_RNA.645-201ENST00000391229 102 ntBASIC0.81□□□□□ -2.28
SKA3Q8IX90 AC002429.1-201ENST00000437672 148 ntBASIC0.81□□□□□ -2.28
SKA3Q8IX90 SNORD124-201ENST00000459577 104 ntBASIC0.81□□□□□ -2.28
SKA3Q8IX90 RPS26P48-201ENST00000491713 339 ntBASIC0.81□□□□□ -2.28
SKA3Q8IX90 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.81□□□□□ -2.28
SKA3Q8IX90 SEPT14P8-201ENST00000508026 178 ntBASIC0.81□□□□□ -2.28
SKA3Q8IX90 RNU7-41P-201ENST00000515917 61 ntBASIC0.81□□□□□ -2.28
SKA3Q8IX90 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC0.81□□□□□ -2.28
SKA3Q8IX90 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.81□□□□□ -2.28
SKA3Q8IX90 AC005357.1-201ENST00000588399 301 ntBASIC0.81□□□□□ -2.28
SKA3Q8IX90 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.81□□□□□ -2.28
SKA3Q8IX90 AC012676.2-201ENST00000619258 186 ntBASIC0.81□□□□□ -2.28
SKA3Q8IX90 MIR103A2-201ENST00000362154 78 ntBASIC0.8□□□□□ -2.28
SKA3Q8IX90 MIR96-201ENST00000362288 78 ntBASIC0.8□□□□□ -2.28
SKA3Q8IX90 RNU6-1209P-201ENST00000363655 107 ntBASIC0.8□□□□□ -2.28
SKA3Q8IX90 Y_RNA.418-201ENST00000384029 102 ntBASIC0.8□□□□□ -2.28
SKA3Q8IX90 Y_RNA.460-201ENST00000384255 102 ntBASIC0.8□□□□□ -2.28
SKA3Q8IX90 MIR520C-201ENST00000385005 87 ntBASIC0.8□□□□□ -2.28
SKA3Q8IX90 MIR802-201ENST00000390235 94 ntBASIC0.8□□□□□ -2.28
SKA3Q8IX90 Y_RNA.602-201ENST00000410535 92 ntBASIC0.8□□□□□ -2.28
SKA3Q8IX90 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.8□□□□□ -2.28
SKA3Q8IX90 RNU7-141P-201ENST00000459304 62 ntBASIC0.8□□□□□ -2.28
SKA3Q8IX90 RNU6-437P-201ENST00000459408 95 ntBASIC0.8□□□□□ -2.28
SKA3Q8IX90 SNORD123-201ENST00000459473 70 ntBASIC0.8□□□□□ -2.28
SKA3Q8IX90 RNA5SP102-201ENST00000516865 106 ntBASIC0.8□□□□□ -2.28
SKA3Q8IX90 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.8□□□□□ -2.28
SKA3Q8IX90 C8orf59P2-201ENST00000603441 271 ntBASIC0.8□□□□□ -2.28
SKA3Q8IX90 AL020996.3-201ENST00000606617 222 ntBASIC0.8□□□□□ -2.28
SKA3Q8IX90 MTND4P29-201ENST00000503122 1372 ntBASIC0.8□□□□□ -2.28
SKA3Q8IX90 AC134026.1-201ENST00000623249 2239 ntBASIC0.8□□□□□ -2.28
SKA3Q8IX90 SNORA25.3-201ENST00000363205 127 ntBASIC0.79□□□□□ -2.28
SKA3Q8IX90 RNA5SP48-201ENST00000363969 126 ntBASIC0.79□□□□□ -2.28
SKA3Q8IX90 Y_RNA.796-201ENST00000364268 102 ntBASIC0.79□□□□□ -2.28
SKA3Q8IX90 RNU6-867P-201ENST00000364956 107 ntBASIC0.79□□□□□ -2.28
SKA3Q8IX90 Y_RNA.799-201ENST00000364992 102 ntBASIC0.79□□□□□ -2.28
SKA3Q8IX90 RNU6-474P-201ENST00000384243 107 ntBASIC0.79□□□□□ -2.28
SKA3Q8IX90 MIR532-201ENST00000385025 91 ntBASIC0.79□□□□□ -2.28
SKA3Q8IX90 RNU6-1248P-201ENST00000391096 64 ntBASIC0.79□□□□□ -2.28
SKA3Q8IX90 SNORA26.5-201ENST00000391215 123 ntBASIC0.79□□□□□ -2.28
SKA3Q8IX90 RNU6-101P-201ENST00000410323 104 ntBASIC0.79□□□□□ -2.28
SKA3Q8IX90 RNU2-14P-201ENST00000411053 191 ntBASIC0.79□□□□□ -2.28
SKA3Q8IX90 HSPE1P25-201ENST00000455484 251 ntBASIC0.79□□□□□ -2.28
SKA3Q8IX90 RNU7-21P-201ENST00000459430 62 ntBASIC0.79□□□□□ -2.28
SKA3Q8IX90 NDUFA4P2-201ENST00000489989 244 ntBASIC0.79□□□□□ -2.28
SKA3Q8IX90 RNU7-43P-201ENST00000516554 64 ntBASIC0.79□□□□□ -2.28
SKA3Q8IX90 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.79□□□□□ -2.28
SKA3Q8IX90 MIR4764-201ENST00000580680 88 ntBASIC0.79□□□□□ -2.28
SKA3Q8IX90 AC087685.1-201ENST00000587507 141 ntBASIC0.79□□□□□ -2.28
SKA3Q8IX90 AC104695.3-201ENST00000604052 296 ntBASIC0.79□□□□□ -2.28
SKA3Q8IX90 AC007742.2-201ENST00000618226 398 ntBASIC0.79□□□□□ -2.28
SKA3Q8IX90 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.78□□□□□ -2.28
SKA3Q8IX90 Y_RNA.4-201ENST00000362333 112 ntBASIC0.78□□□□□ -2.28
SKA3Q8IX90 Y_RNA.28-201ENST00000362554 111 ntBASIC0.78□□□□□ -2.28
SKA3Q8IX90 Y_RNA.164-201ENST00000363709 102 ntBASIC0.78□□□□□ -2.28
SKA3Q8IX90 RNU6-801P-201ENST00000364087 105 ntBASIC0.78□□□□□ -2.28
SKA3Q8IX90 Y_RNA.222-201ENST00000364264 102 ntBASIC0.78□□□□□ -2.28
SKA3Q8IX90 Y_RNA.389-201ENST00000383924 113 ntBASIC0.78□□□□□ -2.28
SKA3Q8IX90 RNU6-442P-201ENST00000383968 104 ntBASIC0.78□□□□□ -2.28
SKA3Q8IX90 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
SKA3Q8IX90 RNU6-823P-201ENST00000391042 103 ntBASIC0.78□□□□□ -2.28
SKA3Q8IX90 MIR1278-201ENST00000408753 81 ntBASIC0.78□□□□□ -2.28
SKA3Q8IX90 SNORA36B-201ENST00000410438 131 ntBASIC0.78□□□□□ -2.28
SKA3Q8IX90 Y_RNA.631-201ENST00000459607 101 ntBASIC0.78□□□□□ -2.28
SKA3Q8IX90 AC136628.3-201ENST00000521868 290 ntBASIC0.78□□□□□ -2.28
SKA3Q8IX90 MIR6767-201ENST00000637302 66 ntBASIC0.78□□□□□ -2.28
SKA3Q8IX90 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.78□□□□□ -2.28
SKA3Q8IX90 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.78□□□□□ -2.29
SKA3Q8IX90 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.77□□□□□ -2.29
SKA3Q8IX90 RNU4-90P-201ENST00000362773 141 ntBASIC0.77□□□□□ -2.29
SKA3Q8IX90 RNA5SP264-201ENST00000363115 107 ntBASIC0.77□□□□□ -2.29
SKA3Q8IX90 Y_RNA.183-201ENST00000363882 113 ntBASIC0.77□□□□□ -2.29
SKA3Q8IX90 SNORD38C-201ENST00000384381 69 ntBASIC0.77□□□□□ -2.29
SKA3Q8IX90 Y_RNA.535-201ENST00000384612 99 ntBASIC0.77□□□□□ -2.29
SKA3Q8IX90 MIR146A-201ENST00000385201 99 ntBASIC0.77□□□□□ -2.29
SKA3Q8IX90 RNU6-496P-201ENST00000516145 99 ntBASIC0.77□□□□□ -2.29
SKA3Q8IX90 ACA64.5-201ENST00000516207 127 ntBASIC0.77□□□□□ -2.29
SKA3Q8IX90 RNU6-191P-201ENST00000516295 94 ntBASIC0.77□□□□□ -2.29
SKA3Q8IX90 RNU6-113P-201ENST00000516653 101 ntBASIC0.77□□□□□ -2.29
SKA3Q8IX90 RNU6-897P-201ENST00000517135 105 ntBASIC0.77□□□□□ -2.29
SKA3Q8IX90 RNU6-988P-201ENST00000519081 107 ntBASIC0.77□□□□□ -2.29
SKA3Q8IX90 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.77□□□□□ -2.29
SKA3Q8IX90 RPL23AP91-201ENST00000569211 455 ntBASIC0.77□□□□□ -2.29
SKA3Q8IX90 MIR4698-201ENST00000577795 80 ntBASIC0.77□□□□□ -2.29
SKA3Q8IX90 MIR3973-201ENST00000579824 107 ntBASIC0.77□□□□□ -2.29
SKA3Q8IX90 AC136443.5-201ENST00000603741 370 ntBASIC0.77□□□□□ -2.29
SKA3Q8IX90 PRELID3BP2-201ENST00000605362 201 ntBASIC0.77□□□□□ -2.29
SKA3Q8IX90 MIR6857-201ENST00000613267 93 ntBASIC0.77□□□□□ -2.29
SKA3Q8IX90 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 224.4 ms