Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 VN1R91P-201ENST00000594377 169 ntBASIC0.49□□□□□ -2.33
NUDCD3Q8IVD9 AP003357.1-201ENST00000604497 148 ntBASIC0.49□□□□□ -2.33
NUDCD3Q8IVD9 JPX_2.1-201ENST00000614161 69 ntBASIC0.49□□□□□ -2.33
NUDCD3Q8IVD9 AC007742.2-201ENST00000618226 398 ntBASIC0.49□□□□□ -2.33
NUDCD3Q8IVD9 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
NUDCD3Q8IVD9 SNORD81.1-201ENST00000363064 77 ntBASIC0.48□□□□□ -2.33
NUDCD3Q8IVD9 RNU6-1209P-201ENST00000363655 107 ntBASIC0.48□□□□□ -2.33
NUDCD3Q8IVD9 Y_RNA.259-201ENST00000364619 101 ntBASIC0.48□□□□□ -2.33
NUDCD3Q8IVD9 U8.7-201ENST00000364940 136 ntBASIC0.48□□□□□ -2.33
NUDCD3Q8IVD9 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.48□□□□□ -2.33
NUDCD3Q8IVD9 RNU6-442P-201ENST00000383968 104 ntBASIC0.48□□□□□ -2.33
NUDCD3Q8IVD9 RNU6-613P-201ENST00000410412 108 ntBASIC0.48□□□□□ -2.33
NUDCD3Q8IVD9 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.48□□□□□ -2.33
NUDCD3Q8IVD9 SNRPGP14-201ENST00000435400 219 ntBASIC0.48□□□□□ -2.33
NUDCD3Q8IVD9 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.48□□□□□ -2.33
NUDCD3Q8IVD9 NDUFA4P2-201ENST00000489989 244 ntBASIC0.48□□□□□ -2.33
NUDCD3Q8IVD9 RNU7-115P-201ENST00000516433 55 ntBASIC0.48□□□□□ -2.33
NUDCD3Q8IVD9 MIR4300-201ENST00000581016 96 ntBASIC0.48□□□□□ -2.33
NUDCD3Q8IVD9 AC087685.1-201ENST00000587507 141 ntBASIC0.48□□□□□ -2.33
NUDCD3Q8IVD9 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC0.48□□□□□ -2.33
NUDCD3Q8IVD9 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.48□□□□□ -2.33
NUDCD3Q8IVD9 Y_RNA.796-201ENST00000364268 102 ntBASIC0.47□□□□□ -2.33
NUDCD3Q8IVD9 Y_RNA.799-201ENST00000364992 102 ntBASIC0.47□□□□□ -2.33
NUDCD3Q8IVD9 RNU6-945P-201ENST00000383947 107 ntBASIC0.47□□□□□ -2.33
NUDCD3Q8IVD9 SNORD116-29-201ENST00000384516 83 ntBASIC0.47□□□□□ -2.33
NUDCD3Q8IVD9 SNORD105-201ENST00000386910 85 ntBASIC0.47□□□□□ -2.33
NUDCD3Q8IVD9 MIR802-201ENST00000390235 94 ntBASIC0.47□□□□□ -2.33
NUDCD3Q8IVD9 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.47□□□□□ -2.33
NUDCD3Q8IVD9 MIR2115-201ENST00000516657 100 ntBASIC0.47□□□□□ -2.33
NUDCD3Q8IVD9 AC127455.1-201ENST00000565496 145 ntBASIC0.47□□□□□ -2.33
NUDCD3Q8IVD9 AL355375.2-201ENST00000574825 175 ntBASIC0.47□□□□□ -2.33
NUDCD3Q8IVD9 MIR5000-201ENST00000577717 103 ntBASIC0.47□□□□□ -2.33
NUDCD3Q8IVD9 AL355073.2-201ENST00000612106 557 ntBASIC0.47□□□□□ -2.33
NUDCD3Q8IVD9 Pinc.1-201ENST00000616452 154 ntBASIC0.47□□□□□ -2.33
NUDCD3Q8IVD9 AC091925.1-201ENST00000623204 462 ntBASIC0.47□□□□□ -2.33
NUDCD3Q8IVD9 MIR4272-201ENST00000635924 64 ntBASIC0.47□□□□□ -2.33
NUDCD3Q8IVD9 RNA5SP347-201ENST00000362445 119 ntBASIC0.46□□□□□ -2.34
NUDCD3Q8IVD9 RNU6-268P-201ENST00000364174 107 ntBASIC0.46□□□□□ -2.34
NUDCD3Q8IVD9 RNU6-1040P-201ENST00000383974 107 ntBASIC0.46□□□□□ -2.34
NUDCD3Q8IVD9 RNY4P36-201ENST00000391116 96 ntBASIC0.46□□□□□ -2.34
NUDCD3Q8IVD9 U8.17-201ENST00000391292 132 ntBASIC0.46□□□□□ -2.34
NUDCD3Q8IVD9 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.46□□□□□ -2.34
NUDCD3Q8IVD9 RNA5SP222-201ENST00000411039 105 ntBASIC0.46□□□□□ -2.34
NUDCD3Q8IVD9 HMGN1P10-201ENST00000474557 553 ntBASIC0.46□□□□□ -2.34
NUDCD3Q8IVD9 RNU6-830P-201ENST00000516353 107 ntBASIC0.46□□□□□ -2.34
NUDCD3Q8IVD9 AC018659.1-201ENST00000551083 169 ntBASIC0.46□□□□□ -2.34
NUDCD3Q8IVD9 MIR3145-201ENST00000580727 82 ntBASIC0.46□□□□□ -2.34
NUDCD3Q8IVD9 AC025253.1-201ENST00000613623 543 ntBASIC0.46□□□□□ -2.34
NUDCD3Q8IVD9 AC010205.1-201ENST00000616668 449 ntBASIC0.46□□□□□ -2.34
NUDCD3Q8IVD9 MIR548AY-201ENST00000617669 107 ntBASIC0.46□□□□□ -2.34
NUDCD3Q8IVD9 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.46□□□□□ -2.34
NUDCD3Q8IVD9 Y_RNA.370-201ENST00000365589 108 ntBASIC0.45□□□□□ -2.34
NUDCD3Q8IVD9 Y_RNA.387-201ENST00000383918 102 ntBASIC0.45□□□□□ -2.34
NUDCD3Q8IVD9 Y_RNA.619-201ENST00000410951 90 ntBASIC0.45□□□□□ -2.34
NUDCD3Q8IVD9 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.45□□□□□ -2.34
NUDCD3Q8IVD9 RNU7-110P-201ENST00000516891 62 ntBASIC0.45□□□□□ -2.34
NUDCD3Q8IVD9 RNU6-1223P-201ENST00000517124 104 ntBASIC0.45□□□□□ -2.34
NUDCD3Q8IVD9 RNU7-181P-201ENST00000517234 74 ntBASIC0.45□□□□□ -2.34
NUDCD3Q8IVD9 MIR548AO-201ENST00000579992 96 ntBASIC0.45□□□□□ -2.34
NUDCD3Q8IVD9 MIR5188-201ENST00000583467 113 ntBASIC0.45□□□□□ -2.34
NUDCD3Q8IVD9 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.45□□□□□ -2.34
NUDCD3Q8IVD9 AC008507.4-201ENST00000585464 127 ntBASIC0.45□□□□□ -2.34
NUDCD3Q8IVD9 MIR1-1-201ENST00000362147 71 ntBASIC0.44□□□□□ -2.34
NUDCD3Q8IVD9 Y_RNA.168-201ENST00000363740 102 ntBASIC0.44□□□□□ -2.34
NUDCD3Q8IVD9 RNU6-396P-201ENST00000365369 105 ntBASIC0.44□□□□□ -2.34
NUDCD3Q8IVD9 RNY1P8-201ENST00000383970 114 ntBASIC0.44□□□□□ -2.34
NUDCD3Q8IVD9 SNORA36.2-201ENST00000384004 127 ntBASIC0.44□□□□□ -2.34
NUDCD3Q8IVD9 Y_RNA.428-201ENST00000384078 102 ntBASIC0.44□□□□□ -2.34
NUDCD3Q8IVD9 Y_RNA.462-201ENST00000384268 102 ntBASIC0.44□□□□□ -2.34
NUDCD3Q8IVD9 Y_RNA.463-201ENST00000384271 102 ntBASIC0.44□□□□□ -2.34
NUDCD3Q8IVD9 SNORA51.10-201ENST00000384418 136 ntBASIC0.44□□□□□ -2.34
NUDCD3Q8IVD9 MTCO2P33-201ENST00000402100 465 ntBASIC0.44□□□□□ -2.34
NUDCD3Q8IVD9 MIR1278-201ENST00000408753 81 ntBASIC0.44□□□□□ -2.34
NUDCD3Q8IVD9 AC024067.1-201ENST00000426199 223 ntBASIC0.44□□□□□ -2.34
NUDCD3Q8IVD9 AC098614.3-201ENST00000438957 440 ntBASIC0.44□□□□□ -2.34
NUDCD3Q8IVD9 RNU6-277P-201ENST00000516272 106 ntBASIC0.44□□□□□ -2.34
NUDCD3Q8IVD9 SNORD116.3-201ENST00000517176 78 ntBASIC0.44□□□□□ -2.34
NUDCD3Q8IVD9 Y_RNA.772-201ENST00000606692 102 ntBASIC0.44□□□□□ -2.34
NUDCD3Q8IVD9 AC011373.1-201ENST00000607270 237 ntBASIC0.44□□□□□ -2.34
NUDCD3Q8IVD9 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.44□□□□□ -2.34
NUDCD3Q8IVD9 MIR6734-201ENST00000621166 68 ntBASIC0.44□□□□□ -2.34
NUDCD3Q8IVD9 RNA5SP499-201ENST00000363982 119 ntBASIC0.43□□□□□ -2.34
NUDCD3Q8IVD9 MIR1287-201ENST00000408492 90 ntBASIC0.43□□□□□ -2.34
NUDCD3Q8IVD9 RNA5SP247-201ENST00000411181 105 ntBASIC0.43□□□□□ -2.34
NUDCD3Q8IVD9 RNA5SP220-201ENST00000516298 104 ntBASIC0.43□□□□□ -2.34
NUDCD3Q8IVD9 RNU6-229P-201ENST00000516614 102 ntBASIC0.43□□□□□ -2.34
NUDCD3Q8IVD9 SNORA20.3-201ENST00000516880 132 ntBASIC0.43□□□□□ -2.34
NUDCD3Q8IVD9 Y_RNA.718-201ENST00000517110 102 ntBASIC0.43□□□□□ -2.34
NUDCD3Q8IVD9 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.43□□□□□ -2.34
NUDCD3Q8IVD9 AC104695.3-201ENST00000604052 296 ntBASIC0.43□□□□□ -2.34
NUDCD3Q8IVD9 AC015726.2-201ENST00000620112 122 ntBASIC0.43□□□□□ -2.34
NUDCD3Q8IVD9 RNU6-369P-201ENST00000362515 102 ntBASIC0.42□□□□□ -2.34
NUDCD3Q8IVD9 Y_RNA.226-201ENST00000364337 114 ntBASIC0.42□□□□□ -2.34
NUDCD3Q8IVD9 Y_RNA.238-201ENST00000364441 102 ntBASIC0.42□□□□□ -2.34
NUDCD3Q8IVD9 Y_RNA.458-201ENST00000384240 102 ntBASIC0.42□□□□□ -2.34
NUDCD3Q8IVD9 RNU6-1237P-201ENST00000384777 107 ntBASIC0.42□□□□□ -2.34
NUDCD3Q8IVD9 SNORD72-201ENST00000390994 80 ntBASIC0.42□□□□□ -2.34
NUDCD3Q8IVD9 RNU4-30P-201ENST00000410245 143 ntBASIC0.42□□□□□ -2.34
NUDCD3Q8IVD9 AC138393.2-201ENST00000414742 246 ntBASIC0.42□□□□□ -2.34
NUDCD3Q8IVD9 AC114737.2-201ENST00000421583 173 ntBASIC0.42□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 170.8 ms