Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 RNU6-284P-201ENST00000411105 106 ntBASIC-0.75□□□□□ -2.53
USP54Q70EL1 MTATP6P18-201ENST00000417994 673 ntBASIC-0.75□□□□□ -2.53
USP54Q70EL1 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC-0.75□□□□□ -2.53
USP54Q70EL1 MIR215-201ENST00000384858 110 ntBASIC-0.76□□□□□ -2.53
USP54Q70EL1 RNA5SP118-201ENST00000410385 109 ntBASIC-0.76□□□□□ -2.53
USP54Q70EL1 RNU6-602P-201ENST00000411155 105 ntBASIC-0.76□□□□□ -2.53
USP54Q70EL1 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC-0.76□□□□□ -2.53
USP54Q70EL1 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC-0.76□□□□□ -2.53
USP54Q70EL1 RNU7-67P-201ENST00000459003 62 ntBASIC-0.76□□□□□ -2.53
USP54Q70EL1 AC134698.4-201ENST00000523451 826 ntBASIC-0.76□□□□□ -2.53
USP54Q70EL1 MIR3152-201ENST00000579801 74 ntBASIC-0.76□□□□□ -2.53
USP54Q70EL1 MIR5583-1-201ENST00000580941 59 ntBASIC-0.76□□□□□ -2.53
USP54Q70EL1 AC010332.2-201ENST00000613083 1904 ntBASIC-0.76□□□□□ -2.53
USP54Q70EL1 ZNF299P-201ENST00000406845 1804 ntBASIC-0.77□□□□□ -2.53
USP54Q70EL1 RNY1P16-201ENST00000363063 111 ntBASIC-0.77□□□□□ -2.53
USP54Q70EL1 RNU6-268P-201ENST00000364174 107 ntBASIC-0.77□□□□□ -2.53
USP54Q70EL1 RNU4-84P-201ENST00000364200 139 ntBASIC-0.77□□□□□ -2.53
USP54Q70EL1 RNU6-1007P-201ENST00000516586 107 ntBASIC-0.77□□□□□ -2.53
USP54Q70EL1 MIR4639-201ENST00000584938 69 ntBASIC-0.77□□□□□ -2.53
USP54Q70EL1 MIR4424-201ENST00000585257 86 ntBASIC-0.77□□□□□ -2.53
USP54Q70EL1 AC092747.3-201ENST00000603769 301 ntBASIC-0.77□□□□□ -2.53
USP54Q70EL1 AL022161.1-201ENST00000604390 213 ntBASIC-0.77□□□□□ -2.53
USP54Q70EL1 AL121757.2-201ENST00000611223 313 ntBASIC-0.77□□□□□ -2.53
USP54Q70EL1 MIR4788-201ENST00000639104 80 ntBASIC-0.77□□□□□ -2.53
USP54Q70EL1 Y_RNA.159-201ENST00000363674 87 ntBASIC-0.78□□□□□ -2.53
USP54Q70EL1 RNU6-282P-201ENST00000365357 103 ntBASIC-0.78□□□□□ -2.53
USP54Q70EL1 Y_RNA.560-201ENST00000384689 102 ntBASIC-0.78□□□□□ -2.53
USP54Q70EL1 MT-TF-201ENST00000387314 71 ntBASIC-0.78□□□□□ -2.53
USP54Q70EL1 RNU6-1165P-201ENST00000410119 107 ntBASIC-0.78□□□□□ -2.53
USP54Q70EL1 Y_RNA.617-201ENST00000410920 90 ntBASIC-0.78□□□□□ -2.53
USP54Q70EL1 AC133104.1-201ENST00000429100 218 ntBASIC-0.78□□□□□ -2.53
USP54Q70EL1 AC073415.1-201ENST00000449240 153 ntBASIC-0.78□□□□□ -2.53
USP54Q70EL1 RNU7-63P-201ENST00000459054 62 ntBASIC-0.78□□□□□ -2.53
USP54Q70EL1 Y_RNA.654-201ENST00000497848 106 ntBASIC-0.78□□□□□ -2.53
USP54Q70EL1 AC105029.1-201ENST00000520250 669 ntBASIC-0.78□□□□□ -2.53
USP54Q70EL1 AC138749.4-201ENST00000563970 127 ntBASIC-0.78□□□□□ -2.53
USP54Q70EL1 U7.6-201ENST00000610841 64 ntBASIC-0.78□□□□□ -2.53
USP54Q70EL1 AC010205.1-201ENST00000616668 449 ntBASIC-0.78□□□□□ -2.53
USP54Q70EL1 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC-0.78□□□□□ -2.53
USP54Q70EL1 MTND3P23-201ENST00000431980 347 ntBASIC-0.78□□□□□ -2.53
USP54Q70EL1 SNRPGP14-201ENST00000435400 219 ntBASIC-0.78□□□□□ -2.53
USP54Q70EL1 RNU7-187P-201ENST00000458985 68 ntBASIC-0.78□□□□□ -2.53
USP54Q70EL1 AC125232.2-201ENST00000592457 143 ntBASIC-0.78□□□□□ -2.53
USP54Q70EL1 RNU6-1115P-201ENST00000362490 106 ntBASIC-0.79□□□□□ -2.54
USP54Q70EL1 RNU6-1229P-201ENST00000364295 107 ntBASIC-0.79□□□□□ -2.54
USP54Q70EL1 Y_RNA.242-201ENST00000364473 110 ntBASIC-0.79□□□□□ -2.54
USP54Q70EL1 ACA59.1-201ENST00000515966 143 ntBASIC-0.79□□□□□ -2.54
USP54Q70EL1 SNORA19.2-201ENST00000516013 114 ntBASIC-0.79□□□□□ -2.54
USP54Q70EL1 SNORA18.4-201ENST00000516440 124 ntBASIC-0.79□□□□□ -2.54
USP54Q70EL1 MTND1P24-201ENST00000552175 861 ntBASIC-0.79□□□□□ -2.54
USP54Q70EL1 AC018645.2-201ENST00000609151 472 ntBASIC-0.79□□□□□ -2.54
USP54Q70EL1 uc_338.28-201ENST00000612082 187 ntBASIC-0.79□□□□□ -2.54
USP54Q70EL1 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC-0.8□□□□□ -2.54
USP54Q70EL1 SNORA24-201ENST00000384096 131 ntBASIC-0.8□□□□□ -2.54
USP54Q70EL1 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.8□□□□□ -2.54
USP54Q70EL1 AL593851.1-201ENST00000426171 157 ntBASIC-0.8□□□□□ -2.54
USP54Q70EL1 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC-0.8□□□□□ -2.54
USP54Q70EL1 SUMO1P3-201ENST00000439961 304 ntBASIC-0.8□□□□□ -2.54
USP54Q70EL1 UBE2V1P7-201ENST00000446395 340 ntBASIC-0.8□□□□□ -2.54
USP54Q70EL1 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC-0.8□□□□□ -2.54
USP54Q70EL1 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC-0.8□□□□□ -2.54
USP54Q70EL1 AC091959.1-201ENST00000495857 238 ntBASIC-0.8□□□□□ -2.54
USP54Q70EL1 MTND2P31-201ENST00000512602 616 ntBASIC-0.8□□□□□ -2.54
USP54Q70EL1 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.8□□□□□ -2.54
USP54Q70EL1 AC092954.2-201ENST00000609103 430 ntBASIC-0.8□□□□□ -2.54
USP54Q70EL1 AC006441.5-201ENST00000612680 209 ntBASIC-0.8□□□□□ -2.54
USP54Q70EL1 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC-0.8□□□□□ -2.54
USP54Q70EL1 Y_RNA.42-201ENST00000362660 108 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 RNU6-1264P-201ENST00000383891 107 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 Y_RNA.536-201ENST00000384621 113 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 RNY1P7-201ENST00000384743 110 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 MIR588-201ENST00000384900 83 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 MIR501-201ENST00000390204 84 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 SNORA75.1-201ENST00000391130 148 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC-0.81□□□□□ -2.54
USP54Q70EL1 MTND3P21-201ENST00000433774 331 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 CCDC34P1-201ENST00000507441 517 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 RNU6-1038P-201ENST00000516516 104 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 SNORA18.6-201ENST00000516792 115 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC-0.81□□□□□ -2.54
USP54Q70EL1 MIR548AB-201ENST00000584917 84 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 MIR4436A-201ENST00000585278 85 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 MIR3674-201ENST00000636576 68 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC-0.81□□□□□ -2.54
USP54Q70EL1 Y_RNA.378-201ENST00000365652 113 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 SNORA69-201ENST00000383895 132 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 RNU6-535P-201ENST00000384722 107 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 MIR196A1-201ENST00000388006 70 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 FCF1P9-201ENST00000412546 282 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 RPL39P25-201ENST00000449384 154 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 RNU7-73P-201ENST00000458743 63 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 RNU6-1114P-201ENST00000516022 107 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 AP001328.1-201ENST00000528550 176 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC-0.81□□□□□ -2.54
USP54Q70EL1 RNU1-29P-201ENST00000606574 126 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 JPX_2.1-201ENST00000614161 69 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 MIR6514-201ENST00000622549 70 ntBASIC-0.81□□□□□ -2.54
USP54Q70EL1 Y_RNA.450-201ENST00000384198 113 ntBASIC-0.82□□□□□ -2.54
USP54Q70EL1 SNORA72-201ENST00000384339 132 ntBASIC-0.82□□□□□ -2.54
USP54Q70EL1 Y_RNA.490-201ENST00000384413 102 ntBASIC-0.82□□□□□ -2.54
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms