Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC073464.1-201ENST00000429823 534 ntBASIC-0.53□□□□□ -2.49
CHD9Q3L8U1 RNU7-181P-201ENST00000517234 74 ntBASIC-0.53□□□□□ -2.49
CHD9Q3L8U1 MTND2P32-201ENST00000521584 1038 ntBASIC-0.53□□□□□ -2.49
CHD9Q3L8U1 SNORA63C-201ENST00000364578 129 ntBASIC-0.53□□□□□ -2.49
CHD9Q3L8U1 Y_RNA.315-201ENST00000365117 102 ntBASIC-0.53□□□□□ -2.49
CHD9Q3L8U1 RNU6-442P-201ENST00000383968 104 ntBASIC-0.53□□□□□ -2.49
CHD9Q3L8U1 SNORA24-201ENST00000384096 131 ntBASIC-0.53□□□□□ -2.49
CHD9Q3L8U1 Y_RNA.582-201ENST00000391023 95 ntBASIC-0.53□□□□□ -2.49
CHD9Q3L8U1 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC-0.53□□□□□ -2.49
CHD9Q3L8U1 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC-0.53□□□□□ -2.49
CHD9Q3L8U1 RNU7-67P-201ENST00000459003 62 ntBASIC-0.53□□□□□ -2.49
CHD9Q3L8U1 RPL30P10-201ENST00000488148 337 ntBASIC-0.53□□□□□ -2.49
CHD9Q3L8U1 RNU6-1116P-201ENST00000517269 99 ntBASIC-0.53□□□□□ -2.49
CHD9Q3L8U1 AC022616.6-201ENST00000520479 119 ntBASIC-0.53□□□□□ -2.49
CHD9Q3L8U1 AP003181.2-201ENST00000528941 181 ntBASIC-0.53□□□□□ -2.49
CHD9Q3L8U1 MIR4770-201ENST00000579149 58 ntBASIC-0.53□□□□□ -2.49
CHD9Q3L8U1 CPDP1-201ENST00000579660 283 ntBASIC-0.53□□□□□ -2.49
CHD9Q3L8U1 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC-0.53□□□□□ -2.49
CHD9Q3L8U1 MT-TF-201ENST00000387314 71 ntBASIC-0.54□□□□□ -2.5
CHD9Q3L8U1 FCF1P4-201ENST00000448326 183 ntBASIC-0.54□□□□□ -2.5
CHD9Q3L8U1 RNU6-430P-201ENST00000517078 107 ntBASIC-0.54□□□□□ -2.5
CHD9Q3L8U1 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC-0.54□□□□□ -2.5
CHD9Q3L8U1 AC091304.10-201ENST00000641554 121 ntBASIC-0.54□□□□□ -2.5
CHD9Q3L8U1 RNU6-403P-201ENST00000363163 104 ntBASIC-0.54□□□□□ -2.5
CHD9Q3L8U1 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.54□□□□□ -2.5
CHD9Q3L8U1 MIR548O-201ENST00000408583 114 ntBASIC-0.54□□□□□ -2.5
CHD9Q3L8U1 AC116353.2-201ENST00000505332 712 ntBASIC-0.54□□□□□ -2.5
CHD9Q3L8U1 RNU6-980P-201ENST00000516925 103 ntBASIC-0.54□□□□□ -2.5
CHD9Q3L8U1 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC-0.54□□□□□ -2.5
CHD9Q3L8U1 uc_338.28-201ENST00000612082 187 ntBASIC-0.54□□□□□ -2.5
CHD9Q3L8U1 HULC.1-201ENST00000612720 240 ntBASIC-0.54□□□□□ -2.5
CHD9Q3L8U1 MIR8066-201ENST00000617280 78 ntBASIC-0.54□□□□□ -2.5
CHD9Q3L8U1 Y_RNA.376-201ENST00000365638 108 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 Y_RNA.430-201ENST00000384081 110 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 RNU6-480P-201ENST00000384332 107 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 MIR215-201ENST00000384858 110 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 AC244250.2-201ENST00000418731 148 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 snoU13.16-201ENST00000459350 104 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 SCARNA24.1-201ENST00000516465 137 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 Y_RNA.683-201ENST00000516508 93 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 RNU6-180P-201ENST00000516697 61 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 MIR4752-201ENST00000579672 72 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 MIR4491-201ENST00000581087 68 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 AC008536.2-201ENST00000607284 349 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 Y_RNA.56-201ENST00000362798 112 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 Y_RNA.367-201ENST00000365544 101 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 RNU6-847P-201ENST00000411115 108 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 MTND3P23-201ENST00000431980 347 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 AC236972.2-201ENST00000434979 310 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 AC010424.1-201ENST00000506336 297 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 FRG2DP-202ENST00000566967 323 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 MTND5P34-201ENST00000568888 325 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 RNU1-29P-201ENST00000606574 126 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 MIR4791-201ENST00000607666 84 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 AC092807.2-201ENST00000609367 243 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 MIR6082-201ENST00000613604 109 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 AL133173.2-201ENST00000614270 90 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 SEPT14P19-203ENST00000633205 211 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 RNU6-1079P-201ENST00000362861 110 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 Y_RNA.110-201ENST00000363220 99 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 Y_RNA.179-201ENST00000363844 90 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 SNORD28-201ENST00000384706 75 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 AC074085.1-201ENST00000413598 418 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 RNU6-1232P-201ENST00000516299 86 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 RNU6-751P-201ENST00000516382 101 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 SNORD45.4-201ENST00000516629 73 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 AC022616.4-201ENST00000522985 181 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 AC069431.2-201ENST00000604149 1099 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 U7.6-201ENST00000610841 64 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 uc_338.19-201ENST00000616808 99 ntBASIC-0.55□□□□□ -2.5
CHD9Q3L8U1 MIR450B-201ENST00000401182 78 ntBASIC-0.56□□□□□ -2.5
CHD9Q3L8U1 AL008987.1-201ENST00000415528 237 ntBASIC-0.56□□□□□ -2.5
CHD9Q3L8U1 UBE2V1P7-201ENST00000446395 340 ntBASIC-0.56□□□□□ -2.5
CHD9Q3L8U1 RNA5SP66-201ENST00000517178 101 ntBASIC-0.56□□□□□ -2.5
CHD9Q3L8U1 PIGPP4-201ENST00000584447 307 ntBASIC-0.56□□□□□ -2.5
CHD9Q3L8U1 U2.17-201ENST00000611454 95 ntBASIC-0.56□□□□□ -2.5
CHD9Q3L8U1 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC-0.56□□□□□ -2.5
CHD9Q3L8U1 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.56□□□□□ -2.5
CHD9Q3L8U1 MIRLET7F2-201ENST00000385277 83 ntBASIC-0.56□□□□□ -2.5
CHD9Q3L8U1 SNORD110-201ENST00000408189 75 ntBASIC-0.56□□□□□ -2.5
CHD9Q3L8U1 RNU6ATAC42P-201ENST00000408637 95 ntBASIC-0.56□□□□□ -2.5
CHD9Q3L8U1 AL137792.2-201ENST00000443484 235 ntBASIC-0.56□□□□□ -2.5
CHD9Q3L8U1 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC-0.56□□□□□ -2.5
CHD9Q3L8U1 RNU2-11P-201ENST00000459191 187 ntBASIC-0.56□□□□□ -2.5
CHD9Q3L8U1 RNU7-175P-201ENST00000515915 61 ntBASIC-0.56□□□□□ -2.5
CHD9Q3L8U1 RNU6-1337P-201ENST00000516525 95 ntBASIC-0.56□□□□□ -2.5
CHD9Q3L8U1 5S_rRNA.15-201ENST00000611169 127 ntBASIC-0.56□□□□□ -2.5
CHD9Q3L8U1 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.56□□□□□ -2.5
CHD9Q3L8U1 SNORD50B-201ENST00000364995 70 ntBASIC-0.57□□□□□ -2.5
CHD9Q3L8U1 RNU6-407P-201ENST00000365280 104 ntBASIC-0.57□□□□□ -2.5
CHD9Q3L8U1 RNU6-540P-201ENST00000384622 101 ntBASIC-0.57□□□□□ -2.5
CHD9Q3L8U1 MTCYBP36-201ENST00000404146 440 ntBASIC-0.57□□□□□ -2.5
CHD9Q3L8U1 AL355994.1-201ENST00000424379 260 ntBASIC-0.57□□□□□ -2.5
Retrieved 100 of 98,524 protein–RNA pairs in 182.9 ms