Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 MIR194-1-201ENST00000384892 85 ntBASIC2.38□□□□□ -2.03
SF3A1Q15459 RNY3P16-201ENST00000516338 101 ntBASIC2.38□□□□□ -2.03
SF3A1Q15459 SNORD45.4-201ENST00000516629 73 ntBASIC2.38□□□□□ -2.03
SF3A1Q15459 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC2.38□□□□□ -2.03
SF3A1Q15459 SNORA77B-201ENST00000578179 125 ntBASIC2.38□□□□□ -2.03
SF3A1Q15459 MIR5688-201ENST00000580619 83 ntBASIC2.38□□□□□ -2.03
SF3A1Q15459 AC087685.1-201ENST00000587507 141 ntBASIC2.38□□□□□ -2.03
SF3A1Q15459 AC106754.2-201ENST00000623006 233 ntBASIC2.38□□□□□ -2.03
SF3A1Q15459 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.38□□□□□ -2.03
SF3A1Q15459 AP000553.5-201ENST00000641933 54 ntBASIC2.38□□□□□ -2.03
SF3A1Q15459 RNU6-653P-201ENST00000363074 106 ntBASIC2.37□□□□□ -2.03
SF3A1Q15459 Y_RNA.229-201ENST00000364347 113 ntBASIC2.37□□□□□ -2.03
SF3A1Q15459 RNU6-923P-201ENST00000364753 107 ntBASIC2.37□□□□□ -2.03
SF3A1Q15459 RNU6-493P-201ENST00000391321 108 ntBASIC2.37□□□□□ -2.03
SF3A1Q15459 AL023284.1-201ENST00000403956 276 ntBASIC2.37□□□□□ -2.03
SF3A1Q15459 MIR1289-2-201ENST00000408360 111 ntBASIC2.37□□□□□ -2.03
SF3A1Q15459 RN7SKP101-201ENST00000411376 320 ntBASIC2.37□□□□□ -2.03
SF3A1Q15459 AL161935.2-201ENST00000414627 60 ntBASIC2.37□□□□□ -2.03
SF3A1Q15459 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.37□□□□□ -2.03
SF3A1Q15459 AC245047.8-201ENST00000456455 284 ntBASIC2.37□□□□□ -2.03
SF3A1Q15459 NDUFA4P2-201ENST00000489989 244 ntBASIC2.37□□□□□ -2.03
SF3A1Q15459 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC2.37□□□□□ -2.03
SF3A1Q15459 AC015712.3-201ENST00000559380 164 ntBASIC2.37□□□□□ -2.03
SF3A1Q15459 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
SF3A1Q15459 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.36□□□□□ -2.03
SF3A1Q15459 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
SF3A1Q15459 SNORD50B-201ENST00000364995 70 ntBASIC2.36□□□□□ -2.03
SF3A1Q15459 RNU6ATAC23P-201ENST00000408448 123 ntBASIC2.36□□□□□ -2.03
SF3A1Q15459 RNA5SP338-201ENST00000410495 85 ntBASIC2.36□□□□□ -2.03
SF3A1Q15459 AL139156.1-201ENST00000412785 841 ntBASIC2.36□□□□□ -2.03
SF3A1Q15459 AL591806.2-201ENST00000433122 173 ntBASIC2.36□□□□□ -2.03
SF3A1Q15459 COX6CP14-201ENST00000469580 174 ntBASIC2.36□□□□□ -2.03
SF3A1Q15459 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.36□□□□□ -2.03
SF3A1Q15459 AC108210.2-201ENST00000503681 201 ntBASIC2.36□□□□□ -2.03
SF3A1Q15459 AC141273.2-201ENST00000618989 130 ntBASIC2.36□□□□□ -2.03
SF3A1Q15459 AC027279.3-201ENST00000625055 122 ntBASIC2.36□□□□□ -2.03
SF3A1Q15459 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.36□□□□□ -2.03
SF3A1Q15459 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
SF3A1Q15459 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
SF3A1Q15459 RNY1-201ENST00000364228 113 ntBASIC2.35□□□□□ -2.03
SF3A1Q15459 RNA5SP138-201ENST00000365098 114 ntBASIC2.35□□□□□ -2.03
SF3A1Q15459 Y_RNA.587-201ENST00000391210 103 ntBASIC2.35□□□□□ -2.03
SF3A1Q15459 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC2.35□□□□□ -2.03
SF3A1Q15459 HMGN2P32-201ENST00000444648 269 ntBASIC2.35□□□□□ -2.03
SF3A1Q15459 AC008834.1-201ENST00000511612 175 ntBASIC2.35□□□□□ -2.03
SF3A1Q15459 AC009779.6-201ENST00000603972 165 ntBASIC2.35□□□□□ -2.03
SF3A1Q15459 uc_338.4-201ENST00000616635 176 ntBASIC2.35□□□□□ -2.03
SF3A1Q15459 Y_RNA.83-201ENST00000363005 113 ntBASIC2.34□□□□□ -2.03
SF3A1Q15459 RNU6-833P-201ENST00000363486 107 ntBASIC2.34□□□□□ -2.03
SF3A1Q15459 RN7SKP51-201ENST00000410781 304 ntBASIC2.34□□□□□ -2.03
SF3A1Q15459 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.34□□□□□ -2.03
SF3A1Q15459 AL021707.8-201ENST00000609428 183 ntBASIC2.34□□□□□ -2.03
SF3A1Q15459 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
SF3A1Q15459 RNU6-199P-201ENST00000362954 107 ntBASIC2.33□□□□□ -2.04
SF3A1Q15459 snoU2_19.4-201ENST00000364329 80 ntBASIC2.33□□□□□ -2.04
SF3A1Q15459 SNORA64-201ENST00000384674 134 ntBASIC2.33□□□□□ -2.04
SF3A1Q15459 RN7SKP164-201ENST00000516138 266 ntBASIC2.33□□□□□ -2.04
SF3A1Q15459 AC019176.1-201ENST00000518519 225 ntBASIC2.33□□□□□ -2.04
SF3A1Q15459 AC015688.6-201ENST00000577737 104 ntBASIC2.33□□□□□ -2.04
SF3A1Q15459 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.33□□□□□ -2.04
SF3A1Q15459 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.32□□□□□ -2.04
SF3A1Q15459 MIR411-201ENST00000362239 96 ntBASIC2.32□□□□□ -2.04
SF3A1Q15459 SNORD114-1-201ENST00000362705 72 ntBASIC2.32□□□□□ -2.04
SF3A1Q15459 Y_RNA.242-201ENST00000364473 110 ntBASIC2.32□□□□□ -2.04
SF3A1Q15459 RNU6-442P-201ENST00000383968 104 ntBASIC2.32□□□□□ -2.04
SF3A1Q15459 RNU6-381P-201ENST00000391259 108 ntBASIC2.32□□□□□ -2.04
SF3A1Q15459 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.32□□□□□ -2.04
SF3A1Q15459 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC2.32□□□□□ -2.04
SF3A1Q15459 AC130289.1-201ENST00000577321 73 ntBASIC2.32□□□□□ -2.04
SF3A1Q15459 AC008507.4-201ENST00000585464 127 ntBASIC2.32□□□□□ -2.04
SF3A1Q15459 Y_RNA.783-201ENST00000613546 102 ntBASIC2.32□□□□□ -2.04
SF3A1Q15459 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.32□□□□□ -2.04
SF3A1Q15459 WWP1P1-201ENST00000466609 2769 ntBASIC2.31□□□□□ -2.04
SF3A1Q15459 MT-TT-201ENST00000387460 66 ntBASIC2.31□□□□□ -2.04
SF3A1Q15459 MIR764-201ENST00000390811 85 ntBASIC2.31□□□□□ -2.04
SF3A1Q15459 SNORD72-201ENST00000390994 80 ntBASIC2.31□□□□□ -2.04
SF3A1Q15459 RNU6-482P-201ENST00000391068 107 ntBASIC2.31□□□□□ -2.04
SF3A1Q15459 RNU2-40P-201ENST00000410833 196 ntBASIC2.31□□□□□ -2.04
SF3A1Q15459 RNU7-149P-201ENST00000516739 59 ntBASIC2.31□□□□□ -2.04
SF3A1Q15459 AC090425.1-201ENST00000610007 140 ntBASIC2.31□□□□□ -2.04
SF3A1Q15459 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
SF3A1Q15459 MIR452-201ENST00000385020 85 ntBASIC2.3□□□□□ -2.04
SF3A1Q15459 MIR616-201ENST00000385293 97 ntBASIC2.3□□□□□ -2.04
SF3A1Q15459 AC079140.2-201ENST00000506193 142 ntBASIC2.3□□□□□ -2.04
SF3A1Q15459 RNU6-453P-201ENST00000516819 85 ntBASIC2.3□□□□□ -2.04
SF3A1Q15459 MIR5089-201ENST00000580047 84 ntBASIC2.3□□□□□ -2.04
SF3A1Q15459 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.3□□□□□ -2.04
SF3A1Q15459 uc_338.20-201ENST00000621563 178 ntBASIC2.3□□□□□ -2.04
SF3A1Q15459 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
SF3A1Q15459 RNU6-457P-201ENST00000363999 107 ntBASIC2.29□□□□□ -2.04
SF3A1Q15459 Y_RNA.257-201ENST00000364596 102 ntBASIC2.29□□□□□ -2.04
SF3A1Q15459 Y_RNA.336-201ENST00000365307 109 ntBASIC2.29□□□□□ -2.04
SF3A1Q15459 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
SF3A1Q15459 AL606845.1-201ENST00000404881 255 ntBASIC2.29□□□□□ -2.04
SF3A1Q15459 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC2.29□□□□□ -2.04
SF3A1Q15459 RNA5SP364-201ENST00000516938 78 ntBASIC2.29□□□□□ -2.04
SF3A1Q15459 MIR3937-201ENST00000580135 106 ntBASIC2.29□□□□□ -2.04
SF3A1Q15459 SNRPGP19-201ENST00000603826 189 ntBASIC2.29□□□□□ -2.04
SF3A1Q15459 AL391903.3-201ENST00000612158 163 ntBASIC2.29□□□□□ -2.04
SF3A1Q15459 Pinc.1-201ENST00000616452 154 ntBASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms